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Cucsat.G10069 (gene) of Cucumber (B10) v3 genome

Gene IDCucsat.G10069
OrganismCucumis sativus L. var. sativus cv. B10 (Cucumber (B10) v3)
DescriptionHMG-Y-related protein A
Genome locationctg1673:4421277..4422988
RNA-Seq ExpressionCucsat.G10069
SyntenyCucsat.G10069
Gene Ontology termsGO:0006334 - nucleosome assembly (biological process)
GO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0016584 - nucleosome positioning (biological process)
GO:0030261 - chromosome condensation (biological process)
GO:0045910 - negative regulation of DNA recombination (biological process)
GO:0000786 - nucleosome (cellular component)
GO:0005730 - nucleolus (cellular component)
GO:0003690 - double-stranded DNA binding (molecular function)
GO:0008168 - methyltransferase activity (molecular function)
GO:0031492 - nucleosomal DNA binding (molecular function)
InterPro domainsIPR005818 - Linker histone H1/H5, domain H15
IPR031059 - High mobility group protein HMGA, plant
IPR036388 - Winged helix-like DNA-binding domain superfamily
IPR036390 - Winged helix DNA-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004150116.1 HMG-Y-related protein A [Cucumis sativus]1.69e-7699.15Show/hide
Query:  MATDDQLNNPPQPPPPAPSLPHYPEMIMAAIDSLNDKNGVSKSAITKQIESTYGDLPPAFTTLLTHHLDVMKQTGQLLFIKNNYMKPDPNAPPKRGRGRP
        MATDDQLNNPPQPPPPAPSLPHYPEMIMAAIDSLNDKNGVSKSAITKQIESTYGDLPPAFTTLLTHHLDVMKQTGQLLFIKNNYMKPDPNAPPKRGRGRP
Subjt:  MATDDQLNNPPQPPPPAPSLPHYPEMIMAAIDSLNDKNGVSKSAITKQIESTYGDLPPAFTTLLTHHLDVMKQTGQLLFIKNNYMKPDPNAPPKRGRGRP

Query:  PKPKVPLPPGTVVSPPTP
        PKPKVPLPPGTVVSPP P
Subjt:  PKPKVPLPPGTVVSPPTP

XP_008466945.1 PREDICTED: HMG-Y-related protein A [Cucumis melo]2.40e-7698.31Show/hide
Query:  MATDDQLNNPPQPPPPAPSLPHYPEMIMAAIDSLNDKNGVSKSAITKQIESTYGDLPPAFTTLLTHHLDVMKQTGQLLFIKNNYMKPDPNAPPKRGRGRP
        MATDDQLNNPPQPPPPAPSLPHYPEMIMAAIDSLNDKNGVSKSAITKQIESTYGDLPPAFTTLLTHHLDVMKQTGQLLF+KNNYMKPDPNAPPKRGRGRP
Subjt:  MATDDQLNNPPQPPPPAPSLPHYPEMIMAAIDSLNDKNGVSKSAITKQIESTYGDLPPAFTTLLTHHLDVMKQTGQLLFIKNNYMKPDPNAPPKRGRGRP

Query:  PKPKVPLPPGTVVSPPTP
        PKPKVPLPPGTVVSPP P
Subjt:  PKPKVPLPPGTVVSPPTP

XP_022953026.1 HMG-Y-related protein B-like [Cucurbita moschata]2.58e-7394.07Show/hide
Query:  MATDDQLNNPPQPPPPAPSLPHYPEMIMAAIDSLNDKNGVSKSAITKQIESTYGDLPPAFTTLLTHHLDVMKQTGQLLFIKNNYMKPDPNAPPKRGRGRP
        MAT DQLNNPPQPPPPAPSLPHYPEMIM+AID+LNDKNGVSKS +TKQIESTYGDLPPAFTTLLTHHLDVMKQTGQLLF+KNNYMKPDPNAPPKRGRGRP
Subjt:  MATDDQLNNPPQPPPPAPSLPHYPEMIMAAIDSLNDKNGVSKSAITKQIESTYGDLPPAFTTLLTHHLDVMKQTGQLLFIKNNYMKPDPNAPPKRGRGRP

Query:  PKPKVPLPPGTVVSPPTP
        PKPKVPLPPGTVVSPP P
Subjt:  PKPKVPLPPGTVVSPPTP

XP_023545599.1 HMG-Y-related protein B-like [Cucurbita pepo subsp. pepo]3.00e-7293.22Show/hide
Query:  MATDDQLNNPPQPPPPAPSLPHYPEMIMAAIDSLNDKNGVSKSAITKQIESTYGDLPPAFTTLLTHHLDVMKQTGQLLFIKNNYMKPDPNAPPKRGRGRP
        MAT DQ NNPPQPPPPAPSLPHYPEMIM+AID+LNDKNGVSKS +TKQIESTYGDLPPAFTTLLTHHLDVMKQTGQLLF+KNNYMKPDPNAPPKRGRGRP
Subjt:  MATDDQLNNPPQPPPPAPSLPHYPEMIMAAIDSLNDKNGVSKSAITKQIESTYGDLPPAFTTLLTHHLDVMKQTGQLLFIKNNYMKPDPNAPPKRGRGRP

Query:  PKPKVPLPPGTVVSPPTP
        PKPKVPLPPGTVVSPP P
Subjt:  PKPKVPLPPGTVVSPPTP

XP_038906720.1 HMG-Y-related protein A-like [Benincasa hispida]1.56e-7495.76Show/hide
Query:  MATDDQLNNPPQPPPPAPSLPHYPEMIMAAIDSLNDKNGVSKSAITKQIESTYGDLPPAFTTLLTHHLDVMKQTGQLLFIKNNYMKPDPNAPPKRGRGRP
        MATDDQLNNPPQPPPPAPSLPHYPEMIM AI+SLNDKNGVSKSAITKQIESTYGDLPPAF+TLLTHHLDVMKQTGQLLF+KNNYMKPDPNAPPKRGRGRP
Subjt:  MATDDQLNNPPQPPPPAPSLPHYPEMIMAAIDSLNDKNGVSKSAITKQIESTYGDLPPAFTTLLTHHLDVMKQTGQLLFIKNNYMKPDPNAPPKRGRGRP

Query:  PKPKVPLPPGTVVSPPTP
        PKPKVPLPPGTVVSPP P
Subjt:  PKPKVPLPPGTVVSPPTP

TrEMBL top hitse value%identityAlignment
A0A0A0KPG4 H15 domain-containing protein8.17e-7799.15Show/hide
Query:  MATDDQLNNPPQPPPPAPSLPHYPEMIMAAIDSLNDKNGVSKSAITKQIESTYGDLPPAFTTLLTHHLDVMKQTGQLLFIKNNYMKPDPNAPPKRGRGRP
        MATDDQLNNPPQPPPPAPSLPHYPEMIMAAIDSLNDKNGVSKSAITKQIESTYGDLPPAFTTLLTHHLDVMKQTGQLLFIKNNYMKPDPNAPPKRGRGRP
Subjt:  MATDDQLNNPPQPPPPAPSLPHYPEMIMAAIDSLNDKNGVSKSAITKQIESTYGDLPPAFTTLLTHHLDVMKQTGQLLFIKNNYMKPDPNAPPKRGRGRP

Query:  PKPKVPLPPGTVVSPPTP
        PKPKVPLPPGTVVSPP P
Subjt:  PKPKVPLPPGTVVSPPTP

A0A1S3CSD8 HMG-Y-related protein A1.16e-7698.31Show/hide
Query:  MATDDQLNNPPQPPPPAPSLPHYPEMIMAAIDSLNDKNGVSKSAITKQIESTYGDLPPAFTTLLTHHLDVMKQTGQLLFIKNNYMKPDPNAPPKRGRGRP
        MATDDQLNNPPQPPPPAPSLPHYPEMIMAAIDSLNDKNGVSKSAITKQIESTYGDLPPAFTTLLTHHLDVMKQTGQLLF+KNNYMKPDPNAPPKRGRGRP
Subjt:  MATDDQLNNPPQPPPPAPSLPHYPEMIMAAIDSLNDKNGVSKSAITKQIESTYGDLPPAFTTLLTHHLDVMKQTGQLLFIKNNYMKPDPNAPPKRGRGRP

Query:  PKPKVPLPPGTVVSPPTP
        PKPKVPLPPGTVVSPP P
Subjt:  PKPKVPLPPGTVVSPPTP

A0A5D3E3W3 HMG-Y-related protein A1.16e-7698.31Show/hide
Query:  MATDDQLNNPPQPPPPAPSLPHYPEMIMAAIDSLNDKNGVSKSAITKQIESTYGDLPPAFTTLLTHHLDVMKQTGQLLFIKNNYMKPDPNAPPKRGRGRP
        MATDDQLNNPPQPPPPAPSLPHYPEMIMAAIDSLNDKNGVSKSAITKQIESTYGDLPPAFTTLLTHHLDVMKQTGQLLF+KNNYMKPDPNAPPKRGRGRP
Subjt:  MATDDQLNNPPQPPPPAPSLPHYPEMIMAAIDSLNDKNGVSKSAITKQIESTYGDLPPAFTTLLTHHLDVMKQTGQLLFIKNNYMKPDPNAPPKRGRGRP

Query:  PKPKVPLPPGTVVSPPTP
        PKPKVPLPPGTVVSPP P
Subjt:  PKPKVPLPPGTVVSPPTP

A0A6J1GLV6 HMG-Y-related protein B-like1.25e-7394.07Show/hide
Query:  MATDDQLNNPPQPPPPAPSLPHYPEMIMAAIDSLNDKNGVSKSAITKQIESTYGDLPPAFTTLLTHHLDVMKQTGQLLFIKNNYMKPDPNAPPKRGRGRP
        MAT DQLNNPPQPPPPAPSLPHYPEMIM+AID+LNDKNGVSKS +TKQIESTYGDLPPAFTTLLTHHLDVMKQTGQLLF+KNNYMKPDPNAPPKRGRGRP
Subjt:  MATDDQLNNPPQPPPPAPSLPHYPEMIMAAIDSLNDKNGVSKSAITKQIESTYGDLPPAFTTLLTHHLDVMKQTGQLLFIKNNYMKPDPNAPPKRGRGRP

Query:  PKPKVPLPPGTVVSPPTP
        PKPKVPLPPGTVVSPP P
Subjt:  PKPKVPLPPGTVVSPPTP

A0A6J1JSA2 HMG-Y-related protein B-like1.25e-7394.07Show/hide
Query:  MATDDQLNNPPQPPPPAPSLPHYPEMIMAAIDSLNDKNGVSKSAITKQIESTYGDLPPAFTTLLTHHLDVMKQTGQLLFIKNNYMKPDPNAPPKRGRGRP
        MAT DQLNNPPQPPPPAPSLPHYPEMIM+AID+LNDKNGVSKS +TKQIESTYGDLPPAFTTLLTHHLDVMKQTGQLLF+KNNYMKPDPNAPPKRGRGRP
Subjt:  MATDDQLNNPPQPPPPAPSLPHYPEMIMAAIDSLNDKNGVSKSAITKQIESTYGDLPPAFTTLLTHHLDVMKQTGQLLFIKNNYMKPDPNAPPKRGRGRP

Query:  PKPKVPLPPGTVVSPPTP
        PKPKVPLPPGTVVSPP P
Subjt:  PKPKVPLPPGTVVSPPTP

SwissProt top hitse value%identityAlignment
Q00423 HMG-Y-related protein A8.6e-3162.71Show/hide
Query:  MATDDQLNNPPQPPPPAPSLPHYPEMIMAAIDSLNDKNGVSKSAITKQIESTYGDLPPAFTTLLTHHLDVMKQTGQLLFIKNNYMKPDPNAPPKRGRGRP
        MAT++   N PQ      SLP YPEMI+  +++LN+ NG +KSAI+K IE+TYG+LP A  T+L  HL+ MK +G+L F +NNYMK DPNAPPKRGRGRP
Subjt:  MATDDQLNNPPQPPPPAPSLPHYPEMIMAAIDSLNDKNGVSKSAITKQIESTYGDLPPAFTTLLTHHLDVMKQTGQLLFIKNNYMKPDPNAPPKRGRGRP

Query:  PKPKVPLPPGTVVSPPTP
        PKPK PLPPGTVVSPP P
Subjt:  PKPKVPLPPGTVVSPPTP

Q10370 HMG-Y-related protein B (Fragment)3.2e-2568.6Show/hide
Query:  SLNDKNGVSKSAITKQIESTYGDLPPAFTTLLTHHLDVMKQTGQLLFIKNNYMKPDPNAPPKRGRGRPPKPKVPLPPGTVVSPPTP
        +LN+ +G +KSAI+K IE+TYG+LP    T+L  HL+ MK++G+L F +NNYMK DPNAPPKRGRGRPPKPKVPLPPGTVVSPP P
Subjt:  SLNDKNGVSKSAITKQIESTYGDLPPAFTTLLTHHLDVMKQTGQLLFIKNNYMKPDPNAPPKRGRGRPPKPKVPLPPGTVVSPPTP

Q43386 HMG-Y-related protein A1.8e-2868.54Show/hide
Query:  PAPSLPHYPEMIMAAIDSLNDKNGVSKSAITKQIESTYGDLPPAFTTLLTHHLDVMKQTGQLLFIKNNYMKPDPNAPPKRGRGRPPKPK
        P+ SLP YP+MIM AI+SLNDKNG +K+ I K IEST   LPP+  TLL++HL+ MK+TGQL+ +KNNYMKPDP+APPKRGRGRPPK K
Subjt:  PAPSLPHYPEMIMAAIDSLNDKNGVSKSAITKQIESTYGDLPPAFTTLLTHHLDVMKQTGQLLFIKNNYMKPDPNAPPKRGRGRPPKPK

Q9FYS5 HMG-Y-related protein A1.3e-2352.5Show/hide
Query:  MATDDQLNNPPQPPPPAPSLPHYPEMIMAAIDSLNDKNGVSKSAITKQIESTYGDLPPAFTTLLTHHLDVMKQTGQLLFIKNNYMKPD-PNAPPKRGRGR
        MATD+     P PP        YPEMI+AAI+ L+DK+G +KSAI+K IE  YG LPPA  +LLT HL  MK++G+L+F+KNNY +   P+APPKRGRGR
Subjt:  MATDDQLNNPPQPPPPAPSLPHYPEMIMAAIDSLNDKNGVSKSAITKQIESTYGDLPPAFTTLLTHHLDVMKQTGQLLFIKNNYMKPD-PNAPPKRGRGR

Query:  PPKPKVPLPPGTVVSPPTPT
        PPK + P  P      P+ T
Subjt:  PPKPKVPLPPGTVVSPPTPT

Q9M5W4 Histone H13.3e-0636.46Show/hide
Query:  SLPHYPEMIMAAIDSLNDKNGVSKSAITKQIESTYGDLPPAFTTLLTHHLDVMKQTGQLLFIKNNYMKPDPNAPPKRGRGRP---PKPKVPLPPGT
        S P + EMI  AI +L ++ G S+ AI K +E  +  LP  F  LL  HL  +  +G+L+ +KN++  P   A P     +    PKPKV   P T
Subjt:  SLPHYPEMIMAAIDSLNDKNGVSKSAITKQIESTYGDLPPAFTTLLTHHLDVMKQTGQLLFIKNNYMKPDPNAPPKRGRGRP---PKPKVPLPPGT

Arabidopsis top hitse value%identityAlignment
AT1G06760.1 winged-helix DNA-binding transcription factor family protein5.8e-0638.36Show/hide
Query:  SLPHYPEMIMAAIDSLNDKNGVSKSAITKQIESTYGDLPPAFTTLLTHHLDVMKQTGQLLFIKNNYMKPDPNA
        S P Y EMI  AI +L ++ G S+ AI K IE    +LPP F  LL  +L  +  +G+L+ +K ++  P  +A
Subjt:  SLPHYPEMIMAAIDSLNDKNGVSKSAITKQIESTYGDLPPAFTTLLTHHLDVMKQTGQLLFIKNNYMKPDPNA

AT1G14900.1 high mobility group A1.3e-2968.54Show/hide
Query:  PAPSLPHYPEMIMAAIDSLNDKNGVSKSAITKQIESTYGDLPPAFTTLLTHHLDVMKQTGQLLFIKNNYMKPDPNAPPKRGRGRPPKPK
        P+ SLP YP+MIM AI+SLNDKNG +K+ I K IEST   LPP+  TLL++HL+ MK+TGQL+ +KNNYMKPDP+APPKRGRGRPPK K
Subjt:  PAPSLPHYPEMIMAAIDSLNDKNGVSKSAITKQIESTYGDLPPAFTTLLTHHLDVMKQTGQLLFIKNNYMKPDPNAPPKRGRGRPPKPK

AT1G48620.1 high mobility group A53.9e-1032.7Show/hide
Query:  ATDDQLNNPPQPPPPAPSLPHYPEMIMAAIDSLNDKNGVSKSAITKQIESTYGDLPPAFTTLLTHHLDVMKQTGQLLFIKNNY-MKPDPNAPP-------
        A   Q    P PP P+ S P Y +MI  AI +LN+ +G SK AI++ IE  Y  +P A   LLTHHL  +K +G L+ +K +Y +   P  PP       
Subjt:  ATDDQLNNPPQPPPPAPSLPHYPEMIMAAIDSLNDKNGVSKSAITKQIESTYGDLPPAFTTLLTHHLDVMKQTGQLLFIKNNY-MKPDPNAPP-------

Query:  -----------------------------KRGRGRPPKPKVPLPPGTVVSPPTPTWPTS
                                     KRGRGRPPK K  +     ++    TW  S
Subjt:  -----------------------------KRGRGRPPKPKVPLPPGTVVSPPTPTWPTS

AT3G18035.1 winged-helix DNA-binding transcription factor family protein5.0e-1035.29Show/hide
Query:  PQPP----PPAPSLPH--YPEMIMAAIDSLNDKNGVSKSAITKQIESTYGDLPPAFTTLLTHHLDVMKQTGQLLFIKNNYMKPDPNAPP-----------
        PQP      P  S+PH  Y EMI AAI +LN+ +G SK AI++ IE  Y  L  A   LLTHHL  +K +G L  +K +Y     + PP           
Subjt:  PQPP----PPAPSLPH--YPEMIMAAIDSLNDKNGVSKSAITKQIESTYGDLPPAFTTLLTHHLDVMKQTGQLLFIKNNYMKPDPNAPP-----------

Query:  ----------------------------KRGRGRPPKPKVPLPPGTVVS-PPT
                                    KRGRGRPPKPK    P  +   PPT
Subjt:  ----------------------------KRGRGRPPKPKVPLPPGTVVS-PPT

AT5G08780.1 winged-helix DNA-binding transcription factor family protein8.9e-0742.42Show/hide
Query:  PSLPHYPEMIMAAIDSLNDKNGVSKSAITKQIESTYGDLPPAFTTLLTHHLDVMKQTGQLLFIKNN
        P  P Y  MI  AI  LN + G S+ AI++ I+S Y +LP A T LL+HHL  + +  ++L   NN
Subjt:  PSLPHYPEMIMAAIDSLNDKNGVSKSAITKQIESTYGDLPPAFTTLLTHHLDVMKQTGQLLFIKNN


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTACCGACGACCAACTCAACAACCCGCCTCAACCACCTCCCCCTGCTCCCTCTCTCCCTCACTACCCCGAGATGATTATGGCAGCAATCGATTCTCTAAACGACAA
AAACGGAGTAAGCAAATCGGCGATTACTAAGCAAATCGAGTCCACATACGGCGATCTACCCCCTGCTTTCACTACGCTTCTCACTCATCACTTAGACGTCATGAAGCAAA
CCGGGCAACTCCTCTTCATCAAAAACAACTACATGAAGCCCGATCCCAACGCCCCACCTAAGCGTGGCAGAGGTCGTCCACCCAAGCCCAAAGTCCCTCTTCCACCAGGC
ACCGTCGTTTCTCCCCCCACGCCCACGTGGCCGACCTCCTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCTACCGACGACCAACTCAACAACCCGCCTCAACCACCTCCCCCTGCTCCCTCTCTCCCTCACTACCCCGAGATGATTATGGCAGCAATCGATTCTCTAAACGACAA
AAACGGAGTAAGCAAATCGGCGATTACTAAGCAAATCGAGTCCACATACGGCGATCTACCCCCTGCTTTCACTACGCTTCTCACTCATCACTTAGACGTCATGAAGCAAA
CCGGGCAACTCCTCTTCATCAAAAACAACTACATGAAGCCCGATCCCAACGCCCCACCTAAGCGTGGCAGAGGTCGTCCACCCAAGCCCAAAGTCCCTCTTCCACCAGGC
ACCGTCGTTTCTCCCCCCACGCCCACGTGGCCGACCTCCTAA
Protein sequenceShow/hide protein sequence
MATDDQLNNPPQPPPPAPSLPHYPEMIMAAIDSLNDKNGVSKSAITKQIESTYGDLPPAFTTLLTHHLDVMKQTGQLLFIKNNYMKPDPNAPPKRGRGRPPKPKVPLPPG
TVVSPPTPTWPTS