CuGenDBv2

Gene ID	Cucsat.G10076
Organism	Cucumis sativus L. var. sativus cv. B10 (Cucumber (B10) v3)
Description	mediator of RNA polymerase II transcription subunit 23
Genome location	ctg1673:4526830..4536119
RNA-Seq Expression	Cucsat.G10076
Synteny	Cucsat.G10076
Gene Ontology terms	GO:0006357 - regulation of transcription by RNA polymerase II (biological process) GO:0010628 - positive regulation of gene expression (biological process) GO:0005667 - transcription factor complex (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0016592 - mediator complex (cellular component)
InterPro domains	IPR021629 - Mediator complex, subunit Med23

Homology

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GenBank top hits

e value

%identity

Alignment

XP_008467111.1 PREDICTED: mediator of RNA polymerase II transcription subunit 23 isoform X1 [Cucumis melo]

1.96e-98

96.93

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Query:  VETTRKIVSFHREDKNADPNNPQSILLDFISSCQNLRIWSLNTITRECLNSEQLQKGKQIDEWWRQASKGDRIVDYMNMDDRSIGMFWVVSYTMAQPACE
        VETTRKI+SFHREDKNADPNNPQSILLDFISSCQNLRIWSLNT TRE LNSEQLQKGKQIDEWWRQASKGDR+VDYMNMDD+SIGMFWVVSYTMAQPACE
Subjt:  VETTRKIVSFHREDKNADPNNPQSILLDFISSCQNLRIWSLNTITRECLNSEQLQKGKQIDEWWRQASKGDRIVDYMNMDDRSIGMFWVVSYTMAQPACE

Query:  TVMNWLTSAGAPELSSAQNLQTNERIMVMREVSPLPMSLLSGFSMNLCSKLAYQMEESLFSGQ
        TVMNWLTSAGAPELSSAQNLQTNERIMVMREVSPLPMSLLSGFSMNLCSKLAYQMEESLFSGQ
Subjt:  TVMNWLTSAGAPELSSAQNLQTNERIMVMREVSPLPMSLLSGFSMNLCSKLAYQMEESLFSGQ

XP_011655454.1 mediator of RNA polymerase II transcription subunit 23 [Cucumis sativus]

1.38e-101

100

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Query:  VETTRKIVSFHREDKNADPNNPQSILLDFISSCQNLRIWSLNTITRECLNSEQLQKGKQIDEWWRQASKGDRIVDYMNMDDRSIGMFWVVSYTMAQPACE
        VETTRKIVSFHREDKNADPNNPQSILLDFISSCQNLRIWSLNTITRECLNSEQLQKGKQIDEWWRQASKGDRIVDYMNMDDRSIGMFWVVSYTMAQPACE
Subjt:  VETTRKIVSFHREDKNADPNNPQSILLDFISSCQNLRIWSLNTITRECLNSEQLQKGKQIDEWWRQASKGDRIVDYMNMDDRSIGMFWVVSYTMAQPACE

Query:  TVMNWLTSAGAPELSSAQNLQTNERIMVMREVSPLPMSLLSGFSMNLCSKLAYQMEESLFSGQ
        TVMNWLTSAGAPELSSAQNLQTNERIMVMREVSPLPMSLLSGFSMNLCSKLAYQMEESLFSGQ
Subjt:  TVMNWLTSAGAPELSSAQNLQTNERIMVMREVSPLPMSLLSGFSMNLCSKLAYQMEESLFSGQ

XP_016898808.1 PREDICTED: mediator of RNA polymerase II transcription subunit 23 isoform X2 [Cucumis melo]

1.71e-98

96.93

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Query:  VETTRKIVSFHREDKNADPNNPQSILLDFISSCQNLRIWSLNTITRECLNSEQLQKGKQIDEWWRQASKGDRIVDYMNMDDRSIGMFWVVSYTMAQPACE
        VETTRKI+SFHREDKNADPNNPQSILLDFISSCQNLRIWSLNT TRE LNSEQLQKGKQIDEWWRQASKGDR+VDYMNMDD+SIGMFWVVSYTMAQPACE
Subjt:  VETTRKIVSFHREDKNADPNNPQSILLDFISSCQNLRIWSLNTITRECLNSEQLQKGKQIDEWWRQASKGDRIVDYMNMDDRSIGMFWVVSYTMAQPACE

Query:  TVMNWLTSAGAPELSSAQNLQTNERIMVMREVSPLPMSLLSGFSMNLCSKLAYQMEESLFSGQ
        TVMNWLTSAGAPELSSAQNLQTNERIMVMREVSPLPMSLLSGFSMNLCSKLAYQMEESLFSGQ
Subjt:  TVMNWLTSAGAPELSSAQNLQTNERIMVMREVSPLPMSLLSGFSMNLCSKLAYQMEESLFSGQ

XP_022973546.1 mediator of RNA polymerase II transcription subunit 23 [Cucurbita maxima]

2.72e-95

93.25

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Query:  VETTRKIVSFHREDKNADPNNPQSILLDFISSCQNLRIWSLNTITRECLNSEQLQKGKQIDEWWRQASKGDRIVDYMNMDDRSIGMFWVVSYTMAQPACE
        VETTRKI+SFHREDK+ADPNNPQSILLDFISSCQNLRIWSLNT TRE LN+EQLQKGKQIDEWWRQASKGDR++DYMNMDDRSIGMFWVVSYTMAQPACE
Subjt:  VETTRKIVSFHREDKNADPNNPQSILLDFISSCQNLRIWSLNTITRECLNSEQLQKGKQIDEWWRQASKGDRIVDYMNMDDRSIGMFWVVSYTMAQPACE

Query:  TVMNWLTSAGAPELSSAQNLQTNERIMVMREVSPLPMSLLSGFSMNLCSKLAYQMEESLFSGQ
        TVMNWL+SAG PELSSAQNLQTNERIM+MREVSPLPMSLLSGFSMNLCSKL YQMEESLFSGQ
Subjt:  TVMNWLTSAGAPELSSAQNLQTNERIMVMREVSPLPMSLLSGFSMNLCSKLAYQMEESLFSGQ

XP_038875594.1 mediator of RNA polymerase II transcription subunit 23 [Benincasa hispida]

1.99e-95

94.48

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Query:  VETTRKIVSFHREDKNADPNNPQSILLDFISSCQNLRIWSLNTITRECLNSEQLQKGKQIDEWWRQASKGDRIVDYMNMDDRSIGMFWVVSYTMAQPACE
        VETTRKI+SFHREDK+ADPNNPQSILLDFISSCQNLR+WSLNT TRE LNSEQLQKGKQIDEWWR ASKGD +VDYMNMDDRSIGMFWVVSYTMAQPACE
Subjt:  VETTRKIVSFHREDKNADPNNPQSILLDFISSCQNLRIWSLNTITRECLNSEQLQKGKQIDEWWRQASKGDRIVDYMNMDDRSIGMFWVVSYTMAQPACE

Query:  TVMNWLTSAGAPELSSAQNLQTNERIMVMREVSPLPMSLLSGFSMNLCSKLAYQMEESLFSGQ
        TVMNWLTSAG PELSSAQNLQTNERIMVMREVSPLPMSLLSGFSMNLCSKLAYQMEESLFSGQ
Subjt:  TVMNWLTSAGAPELSSAQNLQTNERIMVMREVSPLPMSLLSGFSMNLCSKLAYQMEESLFSGQ

TrEMBL top hits

e value

%identity

Alignment

A0A1S3CSR7 mediator of RNA polymerase II transcription subunit 23 isoform X1

9.49e-99

96.93

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Query:  VETTRKIVSFHREDKNADPNNPQSILLDFISSCQNLRIWSLNTITRECLNSEQLQKGKQIDEWWRQASKGDRIVDYMNMDDRSIGMFWVVSYTMAQPACE
        VETTRKI+SFHREDKNADPNNPQSILLDFISSCQNLRIWSLNT TRE LNSEQLQKGKQIDEWWRQASKGDR+VDYMNMDD+SIGMFWVVSYTMAQPACE
Subjt:  VETTRKIVSFHREDKNADPNNPQSILLDFISSCQNLRIWSLNTITRECLNSEQLQKGKQIDEWWRQASKGDRIVDYMNMDDRSIGMFWVVSYTMAQPACE

Query:  TVMNWLTSAGAPELSSAQNLQTNERIMVMREVSPLPMSLLSGFSMNLCSKLAYQMEESLFSGQ
        TVMNWLTSAGAPELSSAQNLQTNERIMVMREVSPLPMSLLSGFSMNLCSKLAYQMEESLFSGQ
Subjt:  TVMNWLTSAGAPELSSAQNLQTNERIMVMREVSPLPMSLLSGFSMNLCSKLAYQMEESLFSGQ

A0A1S4DS63 mediator of RNA polymerase II transcription subunit 23 isoform X2

8.26e-99

96.93

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Query:  VETTRKIVSFHREDKNADPNNPQSILLDFISSCQNLRIWSLNTITRECLNSEQLQKGKQIDEWWRQASKGDRIVDYMNMDDRSIGMFWVVSYTMAQPACE
        VETTRKI+SFHREDKNADPNNPQSILLDFISSCQNLRIWSLNT TRE LNSEQLQKGKQIDEWWRQASKGDR+VDYMNMDD+SIGMFWVVSYTMAQPACE
Subjt:  VETTRKIVSFHREDKNADPNNPQSILLDFISSCQNLRIWSLNTITRECLNSEQLQKGKQIDEWWRQASKGDRIVDYMNMDDRSIGMFWVVSYTMAQPACE

Query:  TVMNWLTSAGAPELSSAQNLQTNERIMVMREVSPLPMSLLSGFSMNLCSKLAYQMEESLFSGQ
        TVMNWLTSAGAPELSSAQNLQTNERIMVMREVSPLPMSLLSGFSMNLCSKLAYQMEESLFSGQ
Subjt:  TVMNWLTSAGAPELSSAQNLQTNERIMVMREVSPLPMSLLSGFSMNLCSKLAYQMEESLFSGQ

A0A5A7TSF1 Mediator of RNA polymerase II transcription subunit 23 isoform X1

9.49e-99

96.93

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Query:  VETTRKIVSFHREDKNADPNNPQSILLDFISSCQNLRIWSLNTITRECLNSEQLQKGKQIDEWWRQASKGDRIVDYMNMDDRSIGMFWVVSYTMAQPACE
        VETTRKI+SFHREDKNADPNNPQSILLDFISSCQNLRIWSLNT TRE LNSEQLQKGKQIDEWWRQASKGDR+VDYMNMDD+SIGMFWVVSYTMAQPACE
Subjt:  VETTRKIVSFHREDKNADPNNPQSILLDFISSCQNLRIWSLNTITRECLNSEQLQKGKQIDEWWRQASKGDRIVDYMNMDDRSIGMFWVVSYTMAQPACE

Query:  TVMNWLTSAGAPELSSAQNLQTNERIMVMREVSPLPMSLLSGFSMNLCSKLAYQMEESLFSGQ
        TVMNWLTSAGAPELSSAQNLQTNERIMVMREVSPLPMSLLSGFSMNLCSKLAYQMEESLFSGQ
Subjt:  TVMNWLTSAGAPELSSAQNLQTNERIMVMREVSPLPMSLLSGFSMNLCSKLAYQMEESLFSGQ

A0A6J1CXU7 mediator of RNA polymerase II transcription subunit 23

4.61e-95

92.64

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Query:  VETTRKIVSFHREDKNADPNNPQSILLDFISSCQNLRIWSLNTITRECLNSEQLQKGKQIDEWWRQASKGDRIVDYMNMDDRSIGMFWVVSYTMAQPACE
        VETTRK++SFHREDK+ADPNNPQSILLDFISSCQNLRIWSLNTITRE LN+EQLQKGKQIDEWWRQASKGDR++DYMNMDDRSIGMFWVVSYTMAQPACE
Subjt:  VETTRKIVSFHREDKNADPNNPQSILLDFISSCQNLRIWSLNTITRECLNSEQLQKGKQIDEWWRQASKGDRIVDYMNMDDRSIGMFWVVSYTMAQPACE

Query:  TVMNWLTSAGAPELSSAQNLQTNERIMVMREVSPLPMSLLSGFSMNLCSKLAYQMEESLFSGQ
        TVMNWL+SAG PELSSAQNLQTNER+M MREVSPLPMSLLSGFSMNLCSKLA+QMEESLFSGQ
Subjt:  TVMNWLTSAGAPELSSAQNLQTNERIMVMREVSPLPMSLLSGFSMNLCSKLAYQMEESLFSGQ

A0A6J1I8Y2 mediator of RNA polymerase II transcription subunit 23

1.32e-95

93.25

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Query:  VETTRKIVSFHREDKNADPNNPQSILLDFISSCQNLRIWSLNTITRECLNSEQLQKGKQIDEWWRQASKGDRIVDYMNMDDRSIGMFWVVSYTMAQPACE
        VETTRKI+SFHREDK+ADPNNPQSILLDFISSCQNLRIWSLNT TRE LN+EQLQKGKQIDEWWRQASKGDR++DYMNMDDRSIGMFWVVSYTMAQPACE
Subjt:  VETTRKIVSFHREDKNADPNNPQSILLDFISSCQNLRIWSLNTITRECLNSEQLQKGKQIDEWWRQASKGDRIVDYMNMDDRSIGMFWVVSYTMAQPACE

Query:  TVMNWLTSAGAPELSSAQNLQTNERIMVMREVSPLPMSLLSGFSMNLCSKLAYQMEESLFSGQ
        TVMNWL+SAG PELSSAQNLQTNERIM+MREVSPLPMSLLSGFSMNLCSKL YQMEESLFSGQ
Subjt:  TVMNWLTSAGAPELSSAQNLQTNERIMVMREVSPLPMSLLSGFSMNLCSKLAYQMEESLFSGQ

SwissProt top hits

e value

%identity

Alignment

F4I4P3 Mediator of RNA polymerase II transcription subunit 23

3.4e-67

77.3

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Query:  VETTRKIVSFHREDKNADPNNPQSILLDFISSCQNLRIWSLNTITRECLNSEQLQKGKQIDEWWRQASKGDRIVDYMNMDDRSIGMFWVVSYTMAQPACE
        VETTRKI+SFHRED+N+DPNNPQS+LLDF+SSCQNLRIWSL+T TR  LN+EQL KGKQIDEWWR  SKG+R++DYMNMDDRSIGMFWVVSYTMAQPACE
Subjt:  VETTRKIVSFHREDKNADPNNPQSILLDFISSCQNLRIWSLNTITRECLNSEQLQKGKQIDEWWRQASKGDRIVDYMNMDDRSIGMFWVVSYTMAQPACE

Query:  TVMNWLTSAGAPELSSAQNLQTNERIMVMREVSPLPMSLLSGFSMNLCSKLAYQMEESLFSGQ
        TV+NWL+SAG  EL     LQ N+R+M+ +EV+PLPMSLLSGFSMNLC KLA QMEE+LF  Q
Subjt:  TVMNWLTSAGAPELSSAQNLQTNERIMVMREVSPLPMSLLSGFSMNLCSKLAYQMEESLFSGQ

Arabidopsis top hits

e value

%identity

Alignment

AT1G23230.1 CONTAINS InterPro DOMAIN/s: Mediator complex subunit Med23 (InterPro:IPR021629); Has 187 Blast hits to 184 proteins in 67 species: Archae - 0; Bacteria - 0; Metazoa - 135; Fungi - 0; Plants - 43; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).

2.4e-68

77.3

Show/hide

Query:  VETTRKIVSFHREDKNADPNNPQSILLDFISSCQNLRIWSLNTITRECLNSEQLQKGKQIDEWWRQASKGDRIVDYMNMDDRSIGMFWVVSYTMAQPACE
        VETTRKI+SFHRED+N+DPNNPQS+LLDF+SSCQNLRIWSL+T TR  LN+EQL KGKQIDEWWR  SKG+R++DYMNMDDRSIGMFWVVSYTMAQPACE
Subjt:  VETTRKIVSFHREDKNADPNNPQSILLDFISSCQNLRIWSLNTITRECLNSEQLQKGKQIDEWWRQASKGDRIVDYMNMDDRSIGMFWVVSYTMAQPACE

Query:  TVMNWLTSAGAPELSSAQNLQTNERIMVMREVSPLPMSLLSGFSMNLCSKLAYQMEESLFSGQ
        TV+NWL+SAG  EL     LQ N+R+M+ +EV+PLPMSLLSGFSMNLC KLA QMEE+LF  Q
Subjt:  TVMNWLTSAGAPELSSAQNLQTNERIMVMREVSPLPMSLLSGFSMNLCSKLAYQMEESLFSGQ

AT1G23230.2 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to salt stress; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Mediator complex subunit Med23 (InterPro:IPR021629).

2.4e-68

77.3

Show/hide

Query:  VETTRKIVSFHREDKNADPNNPQSILLDFISSCQNLRIWSLNTITRECLNSEQLQKGKQIDEWWRQASKGDRIVDYMNMDDRSIGMFWVVSYTMAQPACE
        VETTRKI+SFHRED+N+DPNNPQS+LLDF+SSCQNLRIWSL+T TR  LN+EQL KGKQIDEWWR  SKG+R++DYMNMDDRSIGMFWVVSYTMAQPACE
Subjt:  VETTRKIVSFHREDKNADPNNPQSILLDFISSCQNLRIWSLNTITRECLNSEQLQKGKQIDEWWRQASKGDRIVDYMNMDDRSIGMFWVVSYTMAQPACE

Query:  TVMNWLTSAGAPELSSAQNLQTNERIMVMREVSPLPMSLLSGFSMNLCSKLAYQMEESLFSGQ
        TV+NWL+SAG  EL     LQ N+R+M+ +EV+PLPMSLLSGFSMNLC KLA QMEE+LF  Q
Subjt:  TVMNWLTSAGAPELSSAQNLQTNERIMVMREVSPLPMSLLSGFSMNLCSKLAYQMEESLFSGQ

Sequences

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CDS sequence

Show/hide CDS sequence

GTGGAGACTACAAGAAAAATAGTATCATTTCATAGAGAAGATAAAAATGCTGATCCGAATAATCCTCAAAGCATCCTGCTTGATTTTATTAGCAGTTGTCAGAACTTGCG
TATTTGGTCACTAAATACAATAACAAGAGAATGTTTGAATAGTGAGCAGCTACAGAAAGGAAAACAAATTGATGAATGGTGGAGACAAGCAAGTAAAGGTGATCGGATCG
TGGATTATATGAACATGGATGACAGATCAATTGGGATGTTTTGGGTTGTCTCATACACGATGGCACAACCAGCATGTGAAACTGTGATGAATTGGTTAACTTCTGCAGGA
GCTCCAGAATTATCATCAGCACAAAATTTACAGACCAATGAGAGGATAATGGTTATGCGAGAAGTGAGCCCACTGCCGATGTCTTTGTTATCAGGTTTTTCAATGAACTT
GTGCTCGAAGCTGGCATATCAAATGGAGGAATCCTTATTTTCTGGACAG

mRNA sequence

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Protein sequence

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VETTRKIVSFHREDKNADPNNPQSILLDFISSCQNLRIWSLNTITRECLNSEQLQKGKQIDEWWRQASKGDRIVDYMNMDDRSIGMFWVVSYTMAQPACETVMNWLTSAG
APELSSAQNLQTNERIMVMREVSPLPMSLLSGFSMNLCSKLAYQMEESLFSGQ

Cucsat.G10076 (gene) of Cucumber (B10) v3 genome