CuGenDBv2

Gene ID	Cucsat.G10079
Organism	Cucumis sativus L. var. sativus cv. B10 (Cucumber (B10) v3)
Description	RNA-dependent RNA polymerase
Genome location	ctg1673:4573627..4574606
RNA-Seq Expression	Cucsat.G10079
Synteny	Cucsat.G10079
Gene Ontology terms	GO:0001172 - transcription, RNA-templated (biological process) GO:0031047 - gene silencing by RNA (biological process) GO:0016021 - integral component of membrane (cellular component) GO:0003723 - RNA binding (molecular function) GO:0003968 - RNA-directed 5'-3' RNA polymerase activity (molecular function)
InterPro domains	IPR007855 - RNA-dependent RNA polymerase, eukaryotic-type

Homology

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GenBank top hits

e value

%identity

Alignment

ALM88235.1 RNA-dependent RNA polymerase 1c [Cucumis sativus]

6.98e-113

99.44

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Query:  MGKTIEIYGFRPQVTADEVKEFLENHTGDGTVSTVRISKPKDEKARFTSVTVLFKSKLAAEYIVAKSTTEERKLWFESSYLKARELEKAVVANETKGVLE
        MGKTIEIYGFRPQVTADEVKEFLENHTGDGTVSTVRISKPKDEKARFTSVTVLFKSKLAAEYIVAKSTTEERKLWFESSYLKARELEKAVVANETKGVLE
Subjt:  MGKTIEIYGFRPQVTADEVKEFLENHTGDGTVSTVRISKPKDEKARFTSVTVLFKSKLAAEYIVAKSTTEERKLWFESSYLKARELEKAVVANETKGVLE

Query:  MERMEDVKGHLGSMISNGKMRVIWEGEKWSVEFGNGFRKLWFYLSYEVDEYKMELCFENILSVEFRCPLNEPSKFFLIQV
        MERMEDVKGHLGSMISNGKMRVIWEGEKWSVEFGNGFRKLWFYLSYEVDEYKMELCFENILSVEFRCPLNEPSKFFLIQ+
Subjt:  MERMEDVKGHLGSMISNGKMRVIWEGEKWSVEFGNGFRKLWFYLSYEVDEYKMELCFENILSVEFRCPLNEPSKFFLIQV

AOW73471.1 RNA-dependent RNA polymerase 1c2, partial [Cucumis sativus]

6.87e-113

99.44

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Query:  MGKTIEIYGFRPQVTADEVKEFLENHTGDGTVSTVRISKPKDEKARFTSVTVLFKSKLAAEYIVAKSTTEERKLWFESSYLKARELEKAVVANETKGVLE
        MGKTIEIYGFRPQVTADEVKEFLENHTGDGTVSTVRISKPKDEKARFTSVTVLFKSKLAAEYIVAKSTTEERKLWFESSYLKARELEKAVVANETKGVLE
Subjt:  MGKTIEIYGFRPQVTADEVKEFLENHTGDGTVSTVRISKPKDEKARFTSVTVLFKSKLAAEYIVAKSTTEERKLWFESSYLKARELEKAVVANETKGVLE

Query:  MERMEDVKGHLGSMISNGKMRVIWEGEKWSVEFGNGFRKLWFYLSYEVDEYKMELCFENILSVEFRCPLNEPSKFFLIQV
        MERMEDVKGHLGSMISNGKMRVIWEGEKWSVEFGNGFRKLWFYLSYEVDEYKMELCFENILSVEFRCPLNEPSKFFLIQ+
Subjt:  MERMEDVKGHLGSMISNGKMRVIWEGEKWSVEFGNGFRKLWFYLSYEVDEYKMELCFENILSVEFRCPLNEPSKFFLIQV

KAE8648600.1 hypothetical protein Csa_007966 [Cucumis sativus]

6.87e-113

99.44

Show/hide

Query:  MGKTIEIYGFRPQVTADEVKEFLENHTGDGTVSTVRISKPKDEKARFTSVTVLFKSKLAAEYIVAKSTTEERKLWFESSYLKARELEKAVVANETKGVLE
        MGKTIEIYGFRPQVTADEVKEFLENHTGDGTVSTVRISKPKDEKARFTSVTVLFKSKLAAEYIVAKSTTEERKLWFESSYLKARELEKAVVANETKGVLE
Subjt:  MGKTIEIYGFRPQVTADEVKEFLENHTGDGTVSTVRISKPKDEKARFTSVTVLFKSKLAAEYIVAKSTTEERKLWFESSYLKARELEKAVVANETKGVLE

Query:  MERMEDVKGHLGSMISNGKMRVIWEGEKWSVEFGNGFRKLWFYLSYEVDEYKMELCFENILSVEFRCPLNEPSKFFLIQV
        MERMEDVKGHLGSMISNGKMRVIWEGEKWSVEFGNGFRKLWFYLSYEVDEYKMELCFENILSVEFRCPLNEPSKFFLIQ+
Subjt:  MERMEDVKGHLGSMISNGKMRVIWEGEKWSVEFGNGFRKLWFYLSYEVDEYKMELCFENILSVEFRCPLNEPSKFFLIQV

XP_031740912.1 probable RNA-dependent RNA polymerase 1 [Cucumis sativus]

5.22e-112

98.89

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Query:  MGKTIEIYGFRPQVTADEVKEFLENHTGDGTVSTVRISKPKDEKARFTSVTVLFKSKLAAEYIVAKSTTEERKLWFESSYLKARELEKAVVANETKGVLE
        MGKTIEIYGFRPQVTADEVKEFLENHTGDGTVSTVRISKPKDEKARFTSVTVLFKSKLAAEYIVAKSTTEERKLWFESSYLKARELEKAVVA ETKGVLE
Subjt:  MGKTIEIYGFRPQVTADEVKEFLENHTGDGTVSTVRISKPKDEKARFTSVTVLFKSKLAAEYIVAKSTTEERKLWFESSYLKARELEKAVVANETKGVLE

Query:  MERMEDVKGHLGSMISNGKMRVIWEGEKWSVEFGNGFRKLWFYLSYEVDEYKMELCFENILSVEFRCPLNEPSKFFLIQV
        MERMEDVKGHLGSMISNGKMRVIWEGEKWSVEFGNGFRKLWFYLSYEVDEYKMELCFENILSVEFRCPLNEPSKFFLIQ+
Subjt:  MERMEDVKGHLGSMISNGKMRVIWEGEKWSVEFGNGFRKLWFYLSYEVDEYKMELCFENILSVEFRCPLNEPSKFFLIQV

XP_031741021.1 probable RNA-dependent RNA polymerase 1 [Cucumis sativus]

1.31e-112

99.44

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Query:  MGKTIEIYGFRPQVTADEVKEFLENHTGDGTVSTVRISKPKDEKARFTSVTVLFKSKLAAEYIVAKSTTEERKLWFESSYLKARELEKAVVANETKGVLE
        MGKTIEIYGFRPQVTADEVKEFLENHTGDGTVSTVRISKPKDEKARFTSVTVLFKSKLAAEYIVAKSTTEERKLWFESSYLKARELEKAVVANETKGVLE
Subjt:  MGKTIEIYGFRPQVTADEVKEFLENHTGDGTVSTVRISKPKDEKARFTSVTVLFKSKLAAEYIVAKSTTEERKLWFESSYLKARELEKAVVANETKGVLE

Query:  MERMEDVKGHLGSMISNGKMRVIWEGEKWSVEFGNGFRKLWFYLSYEVDEYKMELCFENILSVEFRCPLNEPSKFFLIQV
        MERMEDVKGHLGSMISNGKMRVIWEGEKWSVEFGNGFRKLWFYLSYEVDEYKMELCFENILSVEFRCPLNEPSKFFLIQ+
Subjt:  MERMEDVKGHLGSMISNGKMRVIWEGEKWSVEFGNGFRKLWFYLSYEVDEYKMELCFENILSVEFRCPLNEPSKFFLIQV

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KRH3 RNA-dependent RNA polymerase

4.71e-112

98.89

Show/hide

Query:  MGKTIEIYGFRPQVTADEVKEFLENHTGDGTVSTVRISKPKDEKARFTSVTVLFKSKLAAEYIVAKSTTEERKLWFESSYLKARELEKAVVANETKGVLE
        MGKTIEIYGFRPQVTADEVKEFLENHTGDGTVSTVRISKPKDEKARFTSVTVLFKSKLAAEYIVAKSTTEERKLWFESSYLKARELEKAVVA ETKGVLE
Subjt:  MGKTIEIYGFRPQVTADEVKEFLENHTGDGTVSTVRISKPKDEKARFTSVTVLFKSKLAAEYIVAKSTTEERKLWFESSYLKARELEKAVVANETKGVLE

Query:  MERMEDVKGHLGSMISNGKMRVIWEGEKWSVEFGNGFRKLWFYLSYEVDEYKMELCFENILSVEFRCPLNEPSKFFLIQV
        MERMEDVKGHLGSMISNGKMRVIWEGEKWSVEFGNGFRKLWFYLSYEVDEYKMELCFENILSVEFRCPLNEPSKFFLIQ+
Subjt:  MERMEDVKGHLGSMISNGKMRVIWEGEKWSVEFGNGFRKLWFYLSYEVDEYKMELCFENILSVEFRCPLNEPSKFFLIQV

A0A0S1YCZ4 RNA-dependent RNA polymerase

3.38e-113

99.44

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Query:  MGKTIEIYGFRPQVTADEVKEFLENHTGDGTVSTVRISKPKDEKARFTSVTVLFKSKLAAEYIVAKSTTEERKLWFESSYLKARELEKAVVANETKGVLE
        MGKTIEIYGFRPQVTADEVKEFLENHTGDGTVSTVRISKPKDEKARFTSVTVLFKSKLAAEYIVAKSTTEERKLWFESSYLKARELEKAVVANETKGVLE
Subjt:  MGKTIEIYGFRPQVTADEVKEFLENHTGDGTVSTVRISKPKDEKARFTSVTVLFKSKLAAEYIVAKSTTEERKLWFESSYLKARELEKAVVANETKGVLE

Query:  MERMEDVKGHLGSMISNGKMRVIWEGEKWSVEFGNGFRKLWFYLSYEVDEYKMELCFENILSVEFRCPLNEPSKFFLIQV
        MERMEDVKGHLGSMISNGKMRVIWEGEKWSVEFGNGFRKLWFYLSYEVDEYKMELCFENILSVEFRCPLNEPSKFFLIQ+
Subjt:  MERMEDVKGHLGSMISNGKMRVIWEGEKWSVEFGNGFRKLWFYLSYEVDEYKMELCFENILSVEFRCPLNEPSKFFLIQV

A0A1D8RK46 RNA-dependent RNA polymerase (Fragment)

3.33e-113

99.44

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Query:  MGKTIEIYGFRPQVTADEVKEFLENHTGDGTVSTVRISKPKDEKARFTSVTVLFKSKLAAEYIVAKSTTEERKLWFESSYLKARELEKAVVANETKGVLE
        MGKTIEIYGFRPQVTADEVKEFLENHTGDGTVSTVRISKPKDEKARFTSVTVLFKSKLAAEYIVAKSTTEERKLWFESSYLKARELEKAVVANETKGVLE
Subjt:  MGKTIEIYGFRPQVTADEVKEFLENHTGDGTVSTVRISKPKDEKARFTSVTVLFKSKLAAEYIVAKSTTEERKLWFESSYLKARELEKAVVANETKGVLE

Query:  MERMEDVKGHLGSMISNGKMRVIWEGEKWSVEFGNGFRKLWFYLSYEVDEYKMELCFENILSVEFRCPLNEPSKFFLIQV
        MERMEDVKGHLGSMISNGKMRVIWEGEKWSVEFGNGFRKLWFYLSYEVDEYKMELCFENILSVEFRCPLNEPSKFFLIQ+
Subjt:  MERMEDVKGHLGSMISNGKMRVIWEGEKWSVEFGNGFRKLWFYLSYEVDEYKMELCFENILSVEFRCPLNEPSKFFLIQV

A0A6J1FF44 RNA-dependent RNA polymerase

2.61e-62

65.19

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Query:  MGKTIEIYGFRPQVTADEVKEFLENHTGDGTVSTVRISKPKDEKARFTSVTVLFKSKLAAEYIVAKSTTEERKLWFESSYLKARELEKAV-VANETKGVL
        MGKTIEIYGF  QVTADEVKEF+ENHTGDGTV TVRISK  DEKARFT  TV F SKL  EY+VA++  E+R LWF SSYLKAR++E+ +  A    G  
Subjt:  MGKTIEIYGFRPQVTADEVKEFLENHTGDGTVSTVRISKPKDEKARFTSVTVLFKSKLAAEYIVAKSTTEERKLWFESSYLKARELEKAV-VANETKGVL

Query:  EMERMEDVKGHLGSMISNGKMRVIWEGEKWSVEFGNGFRKLWFYLSYEVDEYKMELCFENILSVEFRCPLNEPSKFFLIQV
        E+ERME+V    GS++S  +M+VIW+G KWSVE+G G RKL FYLSYE  EYKMELCFENIL V+ RC ++  SK FLIQ+
Subjt:  EMERMEDVKGHLGSMISNGKMRVIWEGEKWSVEFGNGFRKLWFYLSYEVDEYKMELCFENILSVEFRCPLNEPSKFFLIQV

E5GB63 RNA-dependent RNA polymerase

9.69e-98

85.86

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Query:  MGKTIEIYGFRPQVTADEVKEFLENHTGDGTVSTVRISKPKDEKARFTSVTVLFKSKLAAEYIVAKSTTEERKLWFESSYLKARELEKAVVANETKGVLE
        M KTIEIYGF P+VT DEVKEFLENHTGDGTVSTVRISKPKD+K RFTSVTV FKSKLAAEYIVAK+TTEE+KLWFESSYLKARE+EK      T G  E
Subjt:  MGKTIEIYGFRPQVTADEVKEFLENHTGDGTVSTVRISKPKDEKARFTSVTVLFKSKLAAEYIVAKSTTEERKLWFESSYLKARELEKAVVANETKGVLE

Query:  MERMEDVKGHLGSMISNGKMRVIWEGEKWSVEFGNGFRKLWFYLSYEVDEYKMELCFENILSVEFRCPLNEPSKFFLIQVSSFFLSFFLFF
        MERMEDVKG LGSMIS  KMRVIWEGEKW+VEFGNG RKLWFYLSYEVD+YKMELCFENILSVEFRCPLN+PSKFFLIQVSSFFLSFF FF
Subjt:  MERMEDVKGHLGSMISNGKMRVIWEGEKWSVEFGNGFRKLWFYLSYEVDEYKMELCFENILSVEFRCPLNEPSKFFLIQVSSFFLSFFLFF

SwissProt top hits

e value

%identity

Alignment

Q9LQV2 RNA-dependent RNA polymerase 1

7.9e-23

36.11

Show/hide

Query:  MGKTIEIYGFRPQVTADEVKEFLENHTGDGTVSTVRISKPKDEKARFTSVTVLFKSKLAAEYIVAKSTTEERKLWFESSYLKARELEKAVVANETKGVLE
        MGKTI+++GF   V+A+EVK+FLE  TG GTV  +++ +PK    R  ++ V F S+     I+   T    +L++  SYLKA E+E+ +V    K    
Subjt:  MGKTIEIYGFRPQVTADEVKEFLENHTGDGTVSTVRISKPKDEKARFTSVTVLFKSKLAAEYIVAKSTTEERKLWFESSYLKARELEKAVVANETKGVLE

Query:  MERMEDVKGHLGSMISNGKMRVIWEGEKWSVEFGNGFRKLWFYLSYEVDEYKMELCFENILSVEFRCPLNEPSKFFLIQV
        +  +  +K   G  +S  K   +W  +   V FG G RKL F  S+   +Y++EL +ENI  ++   P    SKF +IQV
Subjt:  MERMEDVKGHLGSMISNGKMRVIWEGEKWSVEFGNGFRKLWFYLSYEVDEYKMELCFENILSVEFRCPLNEPSKFFLIQV

Arabidopsis top hits

e value

%identity

Alignment

AT1G14790.1 RNA-dependent RNA polymerase 1

5.6e-24

36.11

Show/hide

Query:  MGKTIEIYGFRPQVTADEVKEFLENHTGDGTVSTVRISKPKDEKARFTSVTVLFKSKLAAEYIVAKSTTEERKLWFESSYLKARELEKAVVANETKGVLE
        MGKTI+++GF   V+A+EVK+FLE  TG GTV  +++ +PK    R  ++ V F S+     I+   T    +L++  SYLKA E+E+ +V    K    
Subjt:  MGKTIEIYGFRPQVTADEVKEFLENHTGDGTVSTVRISKPKDEKARFTSVTVLFKSKLAAEYIVAKSTTEERKLWFESSYLKARELEKAVVANETKGVLE

Query:  MERMEDVKGHLGSMISNGKMRVIWEGEKWSVEFGNGFRKLWFYLSYEVDEYKMELCFENILSVEFRCPLNEPSKFFLIQV
        +  +  +K   G  +S  K   +W  +   V FG G RKL F  S+   +Y++EL +ENI  ++   P    SKF +IQV
Subjt:  MERMEDVKGHLGSMISNGKMRVIWEGEKWSVEFGNGFRKLWFYLSYEVDEYKMELCFENILSVEFRCPLNEPSKFFLIQV

Sequences

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CDS sequence

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ATGGGAAAGACGATCGAAATTTACGGATTTCGGCCCCAGGTGACCGCCGACGAGGTGAAAGAATTTCTCGAGAATCACACTGGAGATGGAACTGTATCAACGGTGCGGAT
TTCGAAACCCAAAGACGAAAAAGCCCGGTTCACATCTGTGACTGTCCTGTTCAAGAGCAAACTAGCAGCTGAGTACATAGTGGCGAAGTCGACAACGGAGGAGAGGAAAC
TGTGGTTCGAAAGTTCATATTTGAAAGCCAGAGAATTGGAGAAGGCGGTAGTGGCGAATGAAACCAAGGGTGTTCTCGAAATGGAGAGAATGGAAGACGTGAAGGGGCAC
TTGGGAAGCATGATTTCGAACGGGAAAATGAGAGTGATTTGGGAAGGAGAGAAATGGAGTGTGGAATTTGGAAATGGATTTAGGAAATTATGGTTTTATTTGAGTTATGA
AGTTGATGAGTACAAAATGGAGCTTTGTTTTGAGAATATTTTGAGTGTTGAGTTTCGTTGCCCTCTCAACGAACCTTCCAAGTTTTTTCTCATTCAGGTTTCTTCTTTCT
TTCTTTCTTTCTTTCTTTTTTTTTTT

mRNA sequence

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Protein sequence

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MGKTIEIYGFRPQVTADEVKEFLENHTGDGTVSTVRISKPKDEKARFTSVTVLFKSKLAAEYIVAKSTTEERKLWFESSYLKARELEKAVVANETKGVLEMERMEDVKGH
LGSMISNGKMRVIWEGEKWSVEFGNGFRKLWFYLSYEVDEYKMELCFENILSVEFRCPLNEPSKFFLIQVSSFFLSFFLFFF

Cucsat.G10079 (gene) of Cucumber (B10) v3 genome