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Cucsat.G10134 (gene) of Cucumber (B10) v3 genome

Gene IDCucsat.G10134
OrganismCucumis sativus L. var. sativus cv. B10 (Cucumber (B10) v3)
DescriptionPectate lyase
Genome locationctg1673:5962353..5963261
RNA-Seq ExpressionCucsat.G10134
SyntenyCucsat.G10134
Gene Ontology termsGO:0045490 - pectin catabolic process (biological process)
GO:0030570 - pectate lyase activity (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR011050 - Pectin lyase fold/virulence factor
IPR012334 - Pectin lyase fold
IPR045032 - Pectin lyase family


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037617.1 pectate lyase-like [Cucumis melo var. makuwa]4.29e-5995.7Show/hide
Query:  TAPLPSNSSLPFVHQHPHLVVEEVQRSINGSRRNLGYLSCGTGNPIDDCWRCDSNWETNRKRLADCAIGFGKNAIGGKNGRFYVVTDSGNDDP
        TAP+PSNSSLPFVHQHPHLVVEEVQRSINGSRRNLGYLSCGTGNPIDDCWRCDSNWETNRKRLADCAIGFGKNAIGGKNGRFYVVTD+ +DDP
Subjt:  TAPLPSNSSLPFVHQHPHLVVEEVQRSINGSRRNLGYLSCGTGNPIDDCWRCDSNWETNRKRLADCAIGFGKNAIGGKNGRFYVVTDSGNDDP

XP_004142773.1 pectate lyase [Cucumis sativus]1.68e-7599.16Show/hide
Query:  MAASSSSSYSLYFLLLLLSLSFFLSMTAPLPSNSSLPFVHQHPHLVVEEVQRSINGSRRNLGYLSCGTGNPIDDCWRCDSNWETNRKRLADCAIGFGKNA
        MAASSSSS SLYFLLLLLSLSFFLSMTAPLPSNSSLPFVHQHPHLVVEEVQRSINGSRRNLGYLSCGTGNPIDDCWRCDSNWETNRKRLADCAIGFGKNA
Subjt:  MAASSSSSYSLYFLLLLLSLSFFLSMTAPLPSNSSLPFVHQHPHLVVEEVQRSINGSRRNLGYLSCGTGNPIDDCWRCDSNWETNRKRLADCAIGFGKNA

Query:  IGGKNGRFYVVTDSGNDDP
        IGGKNGRFYVVTDSGNDDP
Subjt:  IGGKNGRFYVVTDSGNDDP

XP_008458848.1 PREDICTED: pectate lyase-like [Cucumis melo]6.11e-6791.67Show/hide
Query:  MAASSSSSYSLYFLLLLLSLSFFLSM-TAPLPSNSSLPFVHQHPHLVVEEVQRSINGSRRNLGYLSCGTGNPIDDCWRCDSNWETNRKRLADCAIGFGKN
        MAASSSSS  LYFL LLLSL FFLSM TAP+PSNSSLPFVHQHPHL VEEVQRSINGSRRNLGYLSCGTGNPIDDCWRCDSNWETNRKRLADCAIGFGKN
Subjt:  MAASSSSSYSLYFLLLLLSLSFFLSM-TAPLPSNSSLPFVHQHPHLVVEEVQRSINGSRRNLGYLSCGTGNPIDDCWRCDSNWETNRKRLADCAIGFGKN

Query:  AIGGKNGRFYVVTDSGNDDP
        AIGGKNGRFYVVTD+ +DDP
Subjt:  AIGGKNGRFYVVTDSGNDDP

XP_022959813.1 pectate lyase-like [Cucurbita moschata]7.64e-4673.17Show/hide
Query:  SPMAASSSSSYSLYFLLLLLSLSFFLSMTAPLPSNSSLPFVHQHPHLVVEEVQRSINGSR--RNLGYLSCGTGNPIDDCWRCDSNWETNRKRLADCAIGF
        SPMAAS       +F LLLL LSFF +       +SSL  V Q PHLVV+EVQRSIN SR  RNLGYLSC TGNPIDDCWRCD NWETNRKRLADCAIGF
Subjt:  SPMAASSSSSYSLYFLLLLLSLSFFLSMTAPLPSNSSLPFVHQHPHLVVEEVQRSINGSR--RNLGYLSCGTGNPIDDCWRCDSNWETNRKRLADCAIGF

Query:  GKNAIGGKNGRFYVVTDSGNDDP
        GKNAIGG+NGRFYVVTD+G+DDP
Subjt:  GKNAIGGKNGRFYVVTDSGNDDP

XP_038890725.1 pectate lyase-like [Benincasa hispida]5.00e-5680.83Show/hide
Query:  MAASSSSSYSLYFLLLLLSLSFFLSMT-APLPSNSSLPFVHQHPHLVVEEVQRSINGSRRNLGYLSCGTGNPIDDCWRCDSNWETNRKRLADCAIGFGKN
        MAASSS S    FL LLLSLSFF +M+ +   SNSSL  VHQHPHLVV++VQRSIN SRRNLGY SCGTGNPIDDCWRCDSNW TNRKRLADCAIGFGKN
Subjt:  MAASSSSSYSLYFLLLLLSLSFFLSMT-APLPSNSSLPFVHQHPHLVVEEVQRSINGSRRNLGYLSCGTGNPIDDCWRCDSNWETNRKRLADCAIGFGKN

Query:  AIGGKNGRFYVVTDSGNDDP
        AIGGKNGRFYVVTD+G+DDP
Subjt:  AIGGKNGRFYVVTDSGNDDP

TrEMBL top hitse value%identityAlignment
A0A0A0KNX3 Pectate lyase8.13e-7699.16Show/hide
Query:  MAASSSSSYSLYFLLLLLSLSFFLSMTAPLPSNSSLPFVHQHPHLVVEEVQRSINGSRRNLGYLSCGTGNPIDDCWRCDSNWETNRKRLADCAIGFGKNA
        MAASSSSS SLYFLLLLLSLSFFLSMTAPLPSNSSLPFVHQHPHLVVEEVQRSINGSRRNLGYLSCGTGNPIDDCWRCDSNWETNRKRLADCAIGFGKNA
Subjt:  MAASSSSSYSLYFLLLLLSLSFFLSMTAPLPSNSSLPFVHQHPHLVVEEVQRSINGSRRNLGYLSCGTGNPIDDCWRCDSNWETNRKRLADCAIGFGKNA

Query:  IGGKNGRFYVVTDSGNDDP
        IGGKNGRFYVVTDSGNDDP
Subjt:  IGGKNGRFYVVTDSGNDDP

A0A1S3C8C5 Pectate lyase2.96e-6791.67Show/hide
Query:  MAASSSSSYSLYFLLLLLSLSFFLSM-TAPLPSNSSLPFVHQHPHLVVEEVQRSINGSRRNLGYLSCGTGNPIDDCWRCDSNWETNRKRLADCAIGFGKN
        MAASSSSS  LYFL LLLSL FFLSM TAP+PSNSSLPFVHQHPHL VEEVQRSINGSRRNLGYLSCGTGNPIDDCWRCDSNWETNRKRLADCAIGFGKN
Subjt:  MAASSSSSYSLYFLLLLLSLSFFLSM-TAPLPSNSSLPFVHQHPHLVVEEVQRSINGSRRNLGYLSCGTGNPIDDCWRCDSNWETNRKRLADCAIGFGKN

Query:  AIGGKNGRFYVVTDSGNDDP
        AIGGKNGRFYVVTD+ +DDP
Subjt:  AIGGKNGRFYVVTDSGNDDP

A0A5D3CGC7 Pectate lyase2.08e-5995.7Show/hide
Query:  TAPLPSNSSLPFVHQHPHLVVEEVQRSINGSRRNLGYLSCGTGNPIDDCWRCDSNWETNRKRLADCAIGFGKNAIGGKNGRFYVVTDSGNDDP
        TAP+PSNSSLPFVHQHPHLVVEEVQRSINGSRRNLGYLSCGTGNPIDDCWRCDSNWETNRKRLADCAIGFGKNAIGGKNGRFYVVTD+ +DDP
Subjt:  TAPLPSNSSLPFVHQHPHLVVEEVQRSINGSRRNLGYLSCGTGNPIDDCWRCDSNWETNRKRLADCAIGFGKNAIGGKNGRFYVVTDSGNDDP

A0A6J1H707 Pectate lyase3.70e-4673.17Show/hide
Query:  SPMAASSSSSYSLYFLLLLLSLSFFLSMTAPLPSNSSLPFVHQHPHLVVEEVQRSINGSR--RNLGYLSCGTGNPIDDCWRCDSNWETNRKRLADCAIGF
        SPMAAS       +F LLLL LSFF +       +SSL  V Q PHLVV+EVQRSIN SR  RNLGYLSC TGNPIDDCWRCD NWETNRKRLADCAIGF
Subjt:  SPMAASSSSSYSLYFLLLLLSLSFFLSMTAPLPSNSSLPFVHQHPHLVVEEVQRSINGSR--RNLGYLSCGTGNPIDDCWRCDSNWETNRKRLADCAIGF

Query:  GKNAIGGKNGRFYVVTDSGNDDP
        GKNAIGG+NGRFYVVTD+G+DDP
Subjt:  GKNAIGGKNGRFYVVTDSGNDDP

A0A6J1JPY5 Pectate lyase7.43e-4670.97Show/hide
Query:  NSPMAASSSSSYSLYFLLLLLSLSFFLSMTAPLPSNSSLPFVHQHPHLVVEEVQRSINGSR--RNLGYLSCGTGNPIDDCWRCDSNWETNRKRLADCAIG
        +SPMAAS       +F LLLL LSFF +       +SSL  V Q PHLVV++VQRSIN SR  RNLGYLSC TGNPIDDCWRCD NWETNRKRLADCAIG
Subjt:  NSPMAASSSSSYSLYFLLLLLSLSFFLSMTAPLPSNSSLPFVHQHPHLVVEEVQRSINGSR--RNLGYLSCGTGNPIDDCWRCDSNWETNRKRLADCAIG

Query:  FGKNAIGGKNGRFYVVTDSGNDDP
        FGKNAIGG+NGRFY+VTD+G+DDP
Subjt:  FGKNAIGGKNGRFYVVTDSGNDDP

SwissProt top hitse value%identityAlignment
O24554 Pectate lyase4.8e-3567.96Show/hide
Query:  LLSLSFFLSMTAPLPSNSSLPFVHQHPHLVVEEVQRSINGSRRNLGYLSCGTGNPIDDCWRCDSNWETNRKRLADCAIGFGKNAIGGKNGRFYVVTDSGN
        +L L  F+S  A   S+ S     + PH +V EV +SIN SRRNLGYLSCGTGNPIDDCWRCD NW  NR+RLADCAIGFGKNA+GG+NGR YVVTD GN
Subjt:  LLSLSFFLSMTAPLPSNSSLPFVHQHPHLVVEEVQRSINGSRRNLGYLSCGTGNPIDDCWRCDSNWETNRKRLADCAIGFGKNAIGGKNGRFYVVTDSGN

Query:  DDP
        DDP
Subjt:  DDP

Q93Z25 Probable pectate lyase 222.1e-3059.48Show/hide
Query:  SSSYSLYFLLLLLSLSFFLSMTAPLPSNSSLPFVHQHPHLVVEEVQRSING--SRRNLGYLSCGTGNPIDDCWRCDSNWETNRKRLADCAIGFGKNAIGG
        +SSY L F L+      F ++ + LP +         P LVVEEV R IN   SRR LG+ SCG+GNPIDDCWRCD +WE NRKRLADC IGFGKNAIGG
Subjt:  SSSYSLYFLLLLLSLSFFLSMTAPLPSNSSLPFVHQHPHLVVEEVQRSING--SRRNLGYLSCGTGNPIDDCWRCDSNWETNRKRLADCAIGFGKNAIGG

Query:  KNGRFYVVTDSGNDDP
        ++G  YVVTD GNDDP
Subjt:  KNGRFYVVTDSGNDDP

Q9C5M8 Probable pectate lyase 181.2e-3064.49Show/hide
Query:  LLLSLSFFLSMTAPLPSNSSLPFVHQHPHLVVEEVQRSINGS---RRNLGYLSCGTGNPIDDCWRCDSNWETNRKRLADCAIGFGKNAIGGKNGRFYVVT
        L +++  FL + APL  +S +P     P  VVEEV +SIN S   RR LGYLSC TGNPIDDCWRCD +WE +R+RLADCAIGFGKNAIGG++GR YVVT
Subjt:  LLLSLSFFLSMTAPLPSNSSLPFVHQHPHLVVEEVQRSINGS---RRNLGYLSCGTGNPIDDCWRCDSNWETNRKRLADCAIGFGKNAIGGKNGRFYVVT

Query:  DSGNDDP
        DSGND+P
Subjt:  DSGNDDP

Q9FXD8 Probable pectate lyase 51.3e-2961.54Show/hide
Query:  LLLLSLSFFLSMTAPLPSNSSLPFVHQHPHLVVEEVQRSINGSRRNLGYLSCGTGNPIDDCWRCDSNWETNRKRLADCAIGFGKNAIGGKNGRFYVVTDS
        L+ LSLS F  +   L            P LVV+EV   IN SRRNLG LSCGTGNPIDDCWRCD  WE NR+RLADCAIGFGK+AIGG++G+ YVVTDS
Subjt:  LLLLSLSFFLSMTAPLPSNSSLPFVHQHPHLVVEEVQRSINGSRRNLGYLSCGTGNPIDDCWRCDSNWETNRKRLADCAIGFGKNAIGGKNGRFYVVTDS

Query:  GNDD
         + D
Subjt:  GNDD

Q9LTZ0 Putative pectate lyase 113.4e-3363.25Show/hide
Query:  SSSSSYSLYFLLLLLSLSFFLSMTAPLPSNSSLPFVHQHPHLVVEEVQRSI-NGSRRNLGYLSCGTGNPIDDCWRCDSNWETNRKRLADCAIGFGKNAIG
        S S+++  Y  LLLL++   L+       +SSLP   Q P+LVV++V RS+ N SRR+L YLSC TGNPIDDCWRCD NWETNR+RLADCAIGFGKNAIG
Subjt:  SSSSSYSLYFLLLLLSLSFFLSMTAPLPSNSSLPFVHQHPHLVVEEVQRSI-NGSRRNLGYLSCGTGNPIDDCWRCDSNWETNRKRLADCAIGFGKNAIG

Query:  GKNGRFYVVTDSGNDDP
        G+ GR YVVTD  NDDP
Subjt:  GKNGRFYVVTDSGNDDP

Arabidopsis top hitse value%identityAlignment
AT1G67750.1 Pectate lyase family protein9.5e-3161.54Show/hide
Query:  LLLLSLSFFLSMTAPLPSNSSLPFVHQHPHLVVEEVQRSINGSRRNLGYLSCGTGNPIDDCWRCDSNWETNRKRLADCAIGFGKNAIGGKNGRFYVVTDS
        L+ LSLS F  +   L            P LVV+EV   IN SRRNLG LSCGTGNPIDDCWRCD  WE NR+RLADCAIGFGK+AIGG++G+ YVVTDS
Subjt:  LLLLSLSFFLSMTAPLPSNSSLPFVHQHPHLVVEEVQRSINGSRRNLGYLSCGTGNPIDDCWRCDSNWETNRKRLADCAIGFGKNAIGGKNGRFYVVTDS

Query:  GNDD
         + D
Subjt:  GNDD

AT3G27400.1 Pectin lyase-like superfamily protein2.4e-3463.25Show/hide
Query:  SSSSSYSLYFLLLLLSLSFFLSMTAPLPSNSSLPFVHQHPHLVVEEVQRSI-NGSRRNLGYLSCGTGNPIDDCWRCDSNWETNRKRLADCAIGFGKNAIG
        S S+++  Y  LLLL++   L+       +SSLP   Q P+LVV++V RS+ N SRR+L YLSC TGNPIDDCWRCD NWETNR+RLADCAIGFGKNAIG
Subjt:  SSSSSYSLYFLLLLLSLSFFLSMTAPLPSNSSLPFVHQHPHLVVEEVQRSI-NGSRRNLGYLSCGTGNPIDDCWRCDSNWETNRKRLADCAIGFGKNAIG

Query:  GKNGRFYVVTDSGNDDP
        G+ GR YVVTD  NDDP
Subjt:  GKNGRFYVVTDSGNDDP

AT4G24780.1 Pectin lyase-like superfamily protein8.6e-3264.49Show/hide
Query:  LLLSLSFFLSMTAPLPSNSSLPFVHQHPHLVVEEVQRSINGS---RRNLGYLSCGTGNPIDDCWRCDSNWETNRKRLADCAIGFGKNAIGGKNGRFYVVT
        L +++  FL + APL  +S +P     P  VVEEV +SIN S   RR LGYLSC TGNPIDDCWRCD +WE +R+RLADCAIGFGKNAIGG++GR YVVT
Subjt:  LLLSLSFFLSMTAPLPSNSSLPFVHQHPHLVVEEVQRSINGS---RRNLGYLSCGTGNPIDDCWRCDSNWETNRKRLADCAIGFGKNAIGGKNGRFYVVT

Query:  DSGNDDP
        DSGND+P
Subjt:  DSGNDDP

AT4G24780.2 Pectin lyase-like superfamily protein8.6e-3264.49Show/hide
Query:  LLLSLSFFLSMTAPLPSNSSLPFVHQHPHLVVEEVQRSINGS---RRNLGYLSCGTGNPIDDCWRCDSNWETNRKRLADCAIGFGKNAIGGKNGRFYVVT
        L +++  FL + APL  +S +P     P  VVEEV +SIN S   RR LGYLSC TGNPIDDCWRCD +WE +R+RLADCAIGFGKNAIGG++GR YVVT
Subjt:  LLLSLSFFLSMTAPLPSNSSLPFVHQHPHLVVEEVQRSINGS---RRNLGYLSCGTGNPIDDCWRCDSNWETNRKRLADCAIGFGKNAIGGKNGRFYVVT

Query:  DSGNDDP
        DSGND+P
Subjt:  DSGNDDP

AT5G63180.1 Pectin lyase-like superfamily protein1.5e-3159.48Show/hide
Query:  SSSYSLYFLLLLLSLSFFLSMTAPLPSNSSLPFVHQHPHLVVEEVQRSING--SRRNLGYLSCGTGNPIDDCWRCDSNWETNRKRLADCAIGFGKNAIGG
        +SSY L F L+      F ++ + LP +         P LVVEEV R IN   SRR LG+ SCG+GNPIDDCWRCD +WE NRKRLADC IGFGKNAIGG
Subjt:  SSSYSLYFLLLLLSLSFFLSMTAPLPSNSSLPFVHQHPHLVVEEVQRSING--SRRNLGYLSCGTGNPIDDCWRCDSNWETNRKRLADCAIGFGKNAIGG

Query:  KNGRFYVVTDSGNDDP
        ++G  YVVTD GNDDP
Subjt:  KNGRFYVVTDSGNDDP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TTCAATCTTTCTTTTTTCTTTTGTTTAATTTTGAACTCTCCAATGGCGGCTTCTTCTTCTTCTTCTTATTCCCTTTACTTTTTGTTGCTTCTTTTATCTCTTTCTTTCTT
CTTGTCTATGACTGCTCCACTACCTTCCAATTCCTCCTTACCTTTTGTTCATCAACATCCTCATCTCGTCGTTGAAGAAGTTCAAAGGAGCATAAATGGATCAAGAAGAA
ACTTGGGGTATTTATCATGTGGAACAGGAAACCCAATAGACGATTGTTGGAGATGCGATTCCAATTGGGAAACAAACCGTAAACGCTTAGCCGATTGCGCCATCGGCTTC
GGCAAAAACGCAATCGGCGGCAAAAACGGCCGTTTCTACGTAGTCACTGACTCCGGGAACGACGACCCA
mRNA sequenceShow/hide mRNA sequence
TTCAATCTTTCTTTTTTCTTTTGTTTAATTTTGAACTCTCCAATGGCGGCTTCTTCTTCTTCTTCTTATTCCCTTTACTTTTTGTTGCTTCTTTTATCTCTTTCTTTCTT
CTTGTCTATGACTGCTCCACTACCTTCCAATTCCTCCTTACCTTTTGTTCATCAACATCCTCATCTCGTCGTTGAAGAAGTTCAAAGGAGCATAAATGGATCAAGAAGAA
ACTTGGGGTATTTATCATGTGGAACAGGAAACCCAATAGACGATTGTTGGAGATGCGATTCCAATTGGGAAACAAACCGTAAACGCTTAGCCGATTGCGCCATCGGCTTC
GGCAAAAACGCAATCGGCGGCAAAAACGGCCGTTTCTACGTAGTCACTGACTCCGGGAACGACGACCCA
Protein sequenceShow/hide protein sequence
FNLSFFFCLILNSPMAASSSSSYSLYFLLLLLSLSFFLSMTAPLPSNSSLPFVHQHPHLVVEEVQRSINGSRRNLGYLSCGTGNPIDDCWRCDSNWETNRKRLADCAIGF
GKNAIGGKNGRFYVVTDSGNDDP