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Cucsat.G10187 (gene) of Cucumber (B10) v3 genome

Gene IDCucsat.G10187
OrganismCucumis sativus L. var. sativus cv. B10 (Cucumber (B10) v3)
DescriptionRRM domain-containing protein
Genome locationctg1673:7119342..7124660
RNA-Seq ExpressionCucsat.G10187
SyntenyCucsat.G10187
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0040563.1 glutamic acid-rich protein-like [Cucumis melo var. makuwa]1.37e-9486.31Show/hide
Query:  MFDSTPLHCPFTTICPLLQHSCHYNSSISTKFRPPHLNLSLIQASGPMGFPVFAVKRLGKGGIALTEPSDSDIGFDEFFDEGEDNFQDEDD--------I
        M DSTPLHC FTTI PLLQHSCHYNSS STKFRPPHLNLSLIQ SGPMGFPVFA+KRLGKGGIALT+PSDSDI FDEFFDE EDNFQDED+        I
Subjt:  MFDSTPLHCPFTTICPLLQHSCHYNSSISTKFRPPHLNLSLIQASGPMGFPVFAVKRLGKGGIALTEPSDSDIGFDEFFDEGEDNFQDEDD--------I

Query:  LLPLKNTKEWHAARPRGFGEGKVYDTSIEDNLLQEMEQIREAQAANINKLKDQSPSNPNSSRNVVEIA
        LLPLKNT+EWHAARPRGFGEGKVYDTSIED LLQEMEQIREAQAANINKLK+QS S PNSSRNVVEIA
Subjt:  LLPLKNTKEWHAARPRGFGEGKVYDTSIEDNLLQEMEQIREAQAANINKLKDQSPSNPNSSRNVVEIA

KAE8648511.1 hypothetical protein Csa_008404 [Cucumis sativus]4.10e-11299.38Show/hide
Query:  MFDSTPLHCPFTTICPLLQHSCHYNSSISTKFRPPHLNLSLIQASGPMGFPVFAVKRLGKGGIALTEPSDSDIGFDEFFDEGEDNFQDEDDILLPLKNTK
        MFDSTPLHCPFTTICPLLQHSCHYNSSISTKFRPPHLNLSLIQASGPMGFPVFAVKRLGKGGIALTEPSDSDIGFDEFFDEGEDNFQDEDDILLPLKNTK
Subjt:  MFDSTPLHCPFTTICPLLQHSCHYNSSISTKFRPPHLNLSLIQASGPMGFPVFAVKRLGKGGIALTEPSDSDIGFDEFFDEGEDNFQDEDDILLPLKNTK

Query:  EWHAARPRGFGEGKVYDTSIEDNLLQEMEQIREAQAANINKLKDQSPSNPNSSRNVVEIAG
        EWHAARPRGFGEGKVYDTSIEDNLLQEMEQIREAQAANINKLKDQS SNPNSSRNVVEIAG
Subjt:  EWHAARPRGFGEGKVYDTSIEDNLLQEMEQIREAQAANINKLKDQSPSNPNSSRNVVEIAG

XP_008465688.1 PREDICTED: uncharacterized protein LOC103503317 [Cucumis melo]3.94e-9185.71Show/hide
Query:  MFDSTPLHCPFTTICPLLQHSCHYNSSISTKFRPPHLNLSLIQASGPMGFPVFAVKRLGKGGIALTEPSDSDIGFDEFFDEGEDNFQDEDD--------I
        M DSTPLHC FTTI PLLQHSCHYNSS STKFRPPHLNLSLIQ SGPMGFPVFA+KRLGKGGIALT+PSDSDI FDEFFDE EDNFQDED+        I
Subjt:  MFDSTPLHCPFTTICPLLQHSCHYNSSISTKFRPPHLNLSLIQASGPMGFPVFAVKRLGKGGIALTEPSDSDIGFDEFFDEGEDNFQDEDD--------I

Query:  LLPLKNTKEWHAARPRGFGEGKVYDTSIEDNLLQEMEQIREAQAANINKLKDQSPSNPNSSRNVVEIA
        LLPLKNT+EWHAARPRGFGEGKVYDTSIED LLQEMEQIREAQAANINKLK+Q  S PNSSRNVVEIA
Subjt:  LLPLKNTKEWHAARPRGFGEGKVYDTSIEDNLLQEMEQIREAQAANINKLKDQSPSNPNSSRNVVEIA

XP_031741253.1 uncharacterized protein LOC101210443 [Cucumis sativus]1.97e-10799.38Show/hide
Query:  MFDSTPLHCPFTTICPLLQHSCHYNSSISTKFRPPHLNLSLIQASGPMGFPVFAVKRLGKGGIALTEPSDSDIGFDEFFDEGEDNFQDEDDILLPLKNTK
        MFDSTPLHCPFTTICPLLQHSCHYNSSISTKFRPPHLNLSLIQASGPMGFPVFAVKRLGKGGIALTEPSDSDIGFDEFFDEGEDNFQDEDDILLPLKNTK
Subjt:  MFDSTPLHCPFTTICPLLQHSCHYNSSISTKFRPPHLNLSLIQASGPMGFPVFAVKRLGKGGIALTEPSDSDIGFDEFFDEGEDNFQDEDDILLPLKNTK

Query:  EWHAARPRGFGEGKVYDTSIEDNLLQEMEQIREAQAANINKLKDQSPSNPNSSRNVVEIA
        EWHAARPRGFGEGKVYDTSIEDNLLQEMEQIREAQAANINKLKDQS SNPNSSRNVVEIA
Subjt:  EWHAARPRGFGEGKVYDTSIEDNLLQEMEQIREAQAANINKLKDQSPSNPNSSRNVVEIA

XP_038890170.1 uncharacterized protein LOC120079826 [Benincasa hispida]3.34e-7474.07Show/hide
Query:  MFDSTPLHCPFTTICPLLQHSCHYNSSISTKFRPPHLNLSLIQASGPMGFPVFAVKRLGKGGIALTEPSDSDIGFDEFFDEGEDNFQDEDD--ILLPLKN
        MFDS  L C F TI P +QH CHYNS  STKFRPPH + SL+  SGPMGFPVFA+KR GKGG++LTE S+SDI FD+FFDE ED+FQDED+  ILLPLKN
Subjt:  MFDSTPLHCPFTTICPLLQHSCHYNSSISTKFRPPHLNLSLIQASGPMGFPVFAVKRLGKGGIALTEPSDSDIGFDEFFDEGEDNFQDEDD--ILLPLKN

Query:  TKEWHAARPRGFGEGKVYDTSIEDNLLQEMEQIREAQAANINKLKDQSPSNPNSSRNVVEIA
        T+EWH ARPRGFGEGK YDTSIED LLQEMEQ REAQAANINKL +QS S P SSRN VE A
Subjt:  TKEWHAARPRGFGEGKVYDTSIEDNLLQEMEQIREAQAANINKLKDQSPSNPNSSRNVVEIA

TrEMBL top hitse value%identityAlignment
A0A0A0KQN3 Uncharacterized protein6.80e-12299.44Show/hide
Query:  AAPIFSFSEKIVYPNGAEMFDSTPLHCPFTTICPLLQHSCHYNSSISTKFRPPHLNLSLIQASGPMGFPVFAVKRLGKGGIALTEPSDSDIGFDEFFDEG
        AAPIFSFSEKIVYPNGAEMFDSTPLHCPFTTICPLLQHSCHYNSSISTKFRPPHLNLSLIQASGPMGFPVFAVKRLGKGGIALTEPSDSDIGFDEFFDEG
Subjt:  AAPIFSFSEKIVYPNGAEMFDSTPLHCPFTTICPLLQHSCHYNSSISTKFRPPHLNLSLIQASGPMGFPVFAVKRLGKGGIALTEPSDSDIGFDEFFDEG

Query:  EDNFQDEDDILLPLKNTKEWHAARPRGFGEGKVYDTSIEDNLLQEMEQIREAQAANINKLKDQSPSNPNSSRNVVEIA
        EDNFQDEDDILLPLKNTKEWHAARPRGFGEGKVYDTSIEDNLLQEMEQIREAQAANINKLKDQS SNPNSSRNVVEIA
Subjt:  EDNFQDEDDILLPLKNTKEWHAARPRGFGEGKVYDTSIEDNLLQEMEQIREAQAANINKLKDQSPSNPNSSRNVVEIA

A0A0A0KS07 Uncharacterized protein7.99e-128100Show/hide
Query:  AAPIFSFSEKIVYPNGAEMFDSTPLHCPFTTICPLLQHSCHYNSSISTKFRPPHLNLSLIQASGPMGFPVFAVKRLGKGGIALTEPSDSDIGFDEFFDEG
        AAPIFSFSEKIVYPNGAEMFDSTPLHCPFTTICPLLQHSCHYNSSISTKFRPPHLNLSLIQASGPMGFPVFAVKRLGKGGIALTEPSDSDIGFDEFFDEG
Subjt:  AAPIFSFSEKIVYPNGAEMFDSTPLHCPFTTICPLLQHSCHYNSSISTKFRPPHLNLSLIQASGPMGFPVFAVKRLGKGGIALTEPSDSDIGFDEFFDEG

Query:  EDNFQDEDDILLPLKNTKEWHAARPRGFGEGKVYDTSIEDNLLQEMEQIREAQAANINKLKDQSPSNPNSSRNVVEIAG
        EDNFQDEDDILLPLKNTKEWHAARPRGFGEGKVYDTSIEDNLLQEMEQIREAQAANINKLKDQSPSNPNSSRNVVEIAG
Subjt:  EDNFQDEDDILLPLKNTKEWHAARPRGFGEGKVYDTSIEDNLLQEMEQIREAQAANINKLKDQSPSNPNSSRNVVEIAG

A0A1S3CPG6 uncharacterized protein LOC1035033171.91e-9185.71Show/hide
Query:  MFDSTPLHCPFTTICPLLQHSCHYNSSISTKFRPPHLNLSLIQASGPMGFPVFAVKRLGKGGIALTEPSDSDIGFDEFFDEGEDNFQDEDD--------I
        M DSTPLHC FTTI PLLQHSCHYNSS STKFRPPHLNLSLIQ SGPMGFPVFA+KRLGKGGIALT+PSDSDI FDEFFDE EDNFQDED+        I
Subjt:  MFDSTPLHCPFTTICPLLQHSCHYNSSISTKFRPPHLNLSLIQASGPMGFPVFAVKRLGKGGIALTEPSDSDIGFDEFFDEGEDNFQDEDD--------I

Query:  LLPLKNTKEWHAARPRGFGEGKVYDTSIEDNLLQEMEQIREAQAANINKLKDQSPSNPNSSRNVVEIA
        LLPLKNT+EWHAARPRGFGEGKVYDTSIED LLQEMEQIREAQAANINKLK+Q  S PNSSRNVVEIA
Subjt:  LLPLKNTKEWHAARPRGFGEGKVYDTSIEDNLLQEMEQIREAQAANINKLKDQSPSNPNSSRNVVEIA

A0A5D3C5E5 Glutamic acid-rich protein-like6.62e-9586.31Show/hide
Query:  MFDSTPLHCPFTTICPLLQHSCHYNSSISTKFRPPHLNLSLIQASGPMGFPVFAVKRLGKGGIALTEPSDSDIGFDEFFDEGEDNFQDEDD--------I
        M DSTPLHC FTTI PLLQHSCHYNSS STKFRPPHLNLSLIQ SGPMGFPVFA+KRLGKGGIALT+PSDSDI FDEFFDE EDNFQDED+        I
Subjt:  MFDSTPLHCPFTTICPLLQHSCHYNSSISTKFRPPHLNLSLIQASGPMGFPVFAVKRLGKGGIALTEPSDSDIGFDEFFDEGEDNFQDEDD--------I

Query:  LLPLKNTKEWHAARPRGFGEGKVYDTSIEDNLLQEMEQIREAQAANINKLKDQSPSNPNSSRNVVEIA
        LLPLKNT+EWHAARPRGFGEGKVYDTSIED LLQEMEQIREAQAANINKLK+QS S PNSSRNVVEIA
Subjt:  LLPLKNTKEWHAARPRGFGEGKVYDTSIEDNLLQEMEQIREAQAANINKLKDQSPSNPNSSRNVVEIA

A0A6J1KJD4 uncharacterized protein LOC1114937281.63e-5158.05Show/hide
Query:  AEMFDSTPLHCPFTTICPLLQHSCHYNSSI--------------STKFRPPHLNLSLIQASGPMGFPVFAVKRLGKGGIALTEPSDSDIGFDEFFDEGED
        AEM DS PLHC F T  P   HS   NS +              STKFR  H +LSL+    PM FPVF++K+ GKGG++LT  SDSDI FD     G++
Subjt:  AEMFDSTPLHCPFTTICPLLQHSCHYNSSI--------------STKFRPPHLNLSLIQASGPMGFPVFAVKRLGKGGIALTEPSDSDIGFDEFFDEGED

Query:  NFQDEDDILLPLKNTKEWHAARPRGFGEGKVYDTSIEDNLLQEMEQIREAQAANINKLKDQSPSNPNSSRNVVE
        +  D D++LLPL N +EW AARPRGFGEGK YDTSIE+ LLQE+EQ R+AQAANINKLK Q PSNPNSSRNVV+
Subjt:  NFQDEDDILLPLKNTKEWHAARPRGFGEGKVYDTSIEDNLLQEMEQIREAQAANINKLKDQSPSNPNSSRNVVE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G70200.1 RNA-binding (RRM/RBD/RNP motifs) family protein9.8e-1633.15Show/hide
Query:  NGAEMFDSTPLHCPFTTICPLLQHSCHYNSSISTKFRPPHLNLS--------LIQASGPMGFPVFAVKRLGKGGIALTEPSDSDIGFDEFF------DEG
        NGA + +S  LH    +       SC      S +    ++++S         +      GF  FAV +   G   + E  D D   DE +      DEG
Subjt:  NGAEMFDSTPLHCPFTTICPLLQHSCHYNSSISTKFRPPHLNLS--------LIQASGPMGFPVFAVKRLGKGGIALTEPSDSDIGFDEFF------DEG

Query:  EDNFQDEDDILLPLKNTKEWHAARPRGFGEGKVYDTSIEDNLLQEMEQIREAQAANINKLKDQSPSNPNSSR--NVVEIAGQPQ
        E+  +DE +  LP+   K+W   +PRGFG GK Y+T IED LL E+EQ  +AQAAN+NKLK+    +    R  N+++  G+ Q
Subjt:  EDNFQDEDDILLPLKNTKEWHAARPRGFGEGKVYDTSIEDNLLQEMEQIREAQAANINKLKDQSPSNPNSSR--NVVEIAGQPQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GCGGCCCCTATCTTCAGCTTCAGTGAGAAAATCGTTTATCCGAACGGAGCAGAGATGTTCGATTCTACGCCCCTTCACTGCCCTTTCACCACGATTTGCCCGTTGCTGCA
ACACAGTTGCCATTACAACTCTTCAATTTCCACAAAATTCCGCCCCCCCCACCTCAACTTGTCTCTTATCCAGGCCTCTGGACCAATGGGGTTTCCTGTTTTTGCGGTGA
AGAGGTTGGGGAAAGGTGGCATTGCCCTCACTGAGCCAAGTGATTCCGACATTGGCTTTGATGAATTTTTCGATGAGGGTGAGGATAATTTTCAGGACGAGGATGATATT
CTTTTGCCGTTAAAGAACACGAAAGAGTGGCATGCGGCGAGGCCTCGTGGATTTGGAGAAGGGAAGGTGTATGATACTTCGATTGAAGACAACTTGCTACAAGAAATGGA
GCAGATTAGGGAAGCTCAAGCTGCTAATATCAATAAGCTCAAGGATCAATCTCCTTCTAATCCCAACTCTAGTAGAAATGTCGTAGAGATAGCAGGTCAGCCTCAATCTC
TCTCAATTTTTAACTCTTTATTCTCTGATTCTGCAAACTGCTGA
mRNA sequenceShow/hide mRNA sequence
GCGGCCCCTATCTTCAGCTTCAGTGAGAAAATCGTTTATCCGAACGGAGCAGAGATGTTCGATTCTACGCCCCTTCACTGCCCTTTCACCACGATTTGCCCGTTGCTGCA
ACACAGTTGCCATTACAACTCTTCAATTTCCACAAAATTCCGCCCCCCCCACCTCAACTTGTCTCTTATCCAGGCCTCTGGACCAATGGGGTTTCCTGTTTTTGCGGTGA
AGAGGTTGGGGAAAGGTGGCATTGCCCTCACTGAGCCAAGTGATTCCGACATTGGCTTTGATGAATTTTTCGATGAGGGTGAGGATAATTTTCAGGACGAGGATGATATT
CTTTTGCCGTTAAAGAACACGAAAGAGTGGCATGCGGCGAGGCCTCGTGGATTTGGAGAAGGGAAGGTGTATGATACTTCGATTGAAGACAACTTGCTACAAGAAATGGA
GCAGATTAGGGAAGCTCAAGCTGCTAATATCAATAAGCTCAAGGATCAATCTCCTTCTAATCCCAACTCTAGTAGAAATGTCGTAGAGATAGCAGGTCAGCCTCAATCTC
TCTCAATTTTTAACTCTTTATTCTCTGATTCTGCAAACTGCTGA
Protein sequenceShow/hide protein sequence
AAPIFSFSEKIVYPNGAEMFDSTPLHCPFTTICPLLQHSCHYNSSISTKFRPPHLNLSLIQASGPMGFPVFAVKRLGKGGIALTEPSDSDIGFDEFFDEGEDNFQDEDDI
LLPLKNTKEWHAARPRGFGEGKVYDTSIEDNLLQEMEQIREAQAANINKLKDQSPSNPNSSRNVVEIAGQPQSLSIFNSLFSDSANC