CuGenDBv2

Gene ID	Cucsat.G10204
Organism	Cucumis sativus L. var. sativus cv. B10 (Cucumber (B10) v3)
Description	squamous cell carcinoma antigen recognized by T-cells 3 isoform X3
Genome location	ctg1673:5429140..5430500
RNA-Seq Expression	Cucsat.G10204
Synteny	Cucsat.G10204
Gene Ontology terms	GO:0006396 - RNA processing (biological process) GO:0003723 - RNA binding (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0054190.1 squamous cell carcinoma antigen recognized by T-cells 3 isoform X1 [Cucumis melo var. makuwa]

2.64e-41

86.21

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Query:  GHGTDKAGAGKRFESRSS-KESHKGNEQPSGVRRHGGNSVDLKGKNTFAVPRNVRALGWTTDKPKTLEQDDEKPKTNDEFRKLYFKG
        GHG D+AG GKRFESRSS KE HK NEQPSG+R+HGGNSV+LKGKNTFAVPRNVRALGWT DKPKTLEQDDE PK+NDEFRKLYFKG
Subjt:  GHGTDKAGAGKRFESRSS-KESHKGNEQPSGVRRHGGNSVDLKGKNTFAVPRNVRALGWTTDKPKTLEQDDEKPKTNDEFRKLYFKG

TYK15073.1 squamous cell carcinoma antigen recognized by T-cells 3 isoform X3 [Cucumis melo var. makuwa]

3.55e-46

86.21

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Query:  GHGTDKAGAGKRFESRSS-KESHKGNEQPSGVRRHGGNSVDLKGKNTFAVPRNVRALGWTTDKPKTLEQDDEKPKTNDEFRKLYFKG
        GHG D+AG GKRFESRSS KE HK NEQPSG+R+HGGNSV+LKGKNTFAVPRNVRALGWT DKPKTLEQDDE PK+NDEFRKLYFKG
Subjt:  GHGTDKAGAGKRFESRSS-KESHKGNEQPSGVRRHGGNSVDLKGKNTFAVPRNVRALGWTTDKPKTLEQDDEKPKTNDEFRKLYFKG

XP_004142811.2 squamous cell carcinoma antigen recognized by T-cells 3 isoform X1 [Cucumis sativus]

1.50e-49

100

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Query:  GHGTDKAGAGKRFESRSSKESHKGNEQPSGVRRHGGNSVDLKGKNTFAVPRNVRALGWTTDKPKTLEQDDEKPKTNDEFRKLYFKG
        GHGTDKAGAGKRFESRSSKESHKGNEQPSGVRRHGGNSVDLKGKNTFAVPRNVRALGWTTDKPKTLEQDDEKPKTNDEFRKLYFKG
Subjt:  GHGTDKAGAGKRFESRSSKESHKGNEQPSGVRRHGGNSVDLKGKNTFAVPRNVRALGWTTDKPKTLEQDDEKPKTNDEFRKLYFKG

XP_011655427.1 squamous cell carcinoma antigen recognized by T-cells 3 isoform X2 [Cucumis sativus]

1.49e-49

100

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Query:  GHGTDKAGAGKRFESRSSKESHKGNEQPSGVRRHGGNSVDLKGKNTFAVPRNVRALGWTTDKPKTLEQDDEKPKTNDEFRKLYFKG
        GHGTDKAGAGKRFESRSSKESHKGNEQPSGVRRHGGNSVDLKGKNTFAVPRNVRALGWTTDKPKTLEQDDEKPKTNDEFRKLYFKG
Subjt:  GHGTDKAGAGKRFESRSSKESHKGNEQPSGVRRHGGNSVDLKGKNTFAVPRNVRALGWTTDKPKTLEQDDEKPKTNDEFRKLYFKG

XP_031740936.1 squamous cell carcinoma antigen recognized by T-cells 3 isoform X3 [Cucumis sativus]

6.52e-50

100

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Query:  GHGTDKAGAGKRFESRSSKESHKGNEQPSGVRRHGGNSVDLKGKNTFAVPRNVRALGWTTDKPKTLEQDDEKPKTNDEFRKLYFKG
        GHGTDKAGAGKRFESRSSKESHKGNEQPSGVRRHGGNSVDLKGKNTFAVPRNVRALGWTTDKPKTLEQDDEKPKTNDEFRKLYFKG
Subjt:  GHGTDKAGAGKRFESRSSKESHKGNEQPSGVRRHGGNSVDLKGKNTFAVPRNVRALGWTTDKPKTLEQDDEKPKTNDEFRKLYFKG

TrEMBL top hits

e value

%identity

Alignment

A0A1S3CCC2 squamous cell carcinoma antigen recognized by T-cells 3 isoform X1

3.49e-41

86.21

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Query:  GHGTDKAGAGKRFESRSS-KESHKGNEQPSGVRRHGGNSVDLKGKNTFAVPRNVRALGWTTDKPKTLEQDDEKPKTNDEFRKLYFKG
        GHG D+AG GKRFESRSS KE HK NEQPSG+R+HGGNSV+LKGKNTFAVPRNVRALGWT DKPKTLEQDDE PK+NDEFRKLYFKG
Subjt:  GHGTDKAGAGKRFESRSS-KESHKGNEQPSGVRRHGGNSVDLKGKNTFAVPRNVRALGWTTDKPKTLEQDDEKPKTNDEFRKLYFKG

A0A1S3CCW0 squamous cell carcinoma antigen recognized by T-cells 3 isoform X3

2.32e-41

86.21

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Query:  GHGTDKAGAGKRFESRSS-KESHKGNEQPSGVRRHGGNSVDLKGKNTFAVPRNVRALGWTTDKPKTLEQDDEKPKTNDEFRKLYFKG
        GHG D+AG GKRFESRSS KE HK NEQPSG+R+HGGNSV+LKGKNTFAVPRNVRALGWT DKPKTLEQDDE PK+NDEFRKLYFKG
Subjt:  GHGTDKAGAGKRFESRSS-KESHKGNEQPSGVRRHGGNSVDLKGKNTFAVPRNVRALGWTTDKPKTLEQDDEKPKTNDEFRKLYFKG

A0A1S4E2W5 squamous cell carcinoma antigen recognized by T-cells 3 isoform X2

2.65e-41

86.21

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Query:  GHGTDKAGAGKRFESRSS-KESHKGNEQPSGVRRHGGNSVDLKGKNTFAVPRNVRALGWTTDKPKTLEQDDEKPKTNDEFRKLYFKG
        GHG D+AG GKRFESRSS KE HK NEQPSG+R+HGGNSV+LKGKNTFAVPRNVRALGWT DKPKTLEQDDE PK+NDEFRKLYFKG
Subjt:  GHGTDKAGAGKRFESRSS-KESHKGNEQPSGVRRHGGNSVDLKGKNTFAVPRNVRALGWTTDKPKTLEQDDEKPKTNDEFRKLYFKG

A0A5A7UG19 Squamous cell carcinoma antigen recognized by T-cells 3 isoform X1

1.28e-41

86.21

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Query:  GHGTDKAGAGKRFESRSS-KESHKGNEQPSGVRRHGGNSVDLKGKNTFAVPRNVRALGWTTDKPKTLEQDDEKPKTNDEFRKLYFKG
        GHG D+AG GKRFESRSS KE HK NEQPSG+R+HGGNSV+LKGKNTFAVPRNVRALGWT DKPKTLEQDDE PK+NDEFRKLYFKG
Subjt:  GHGTDKAGAGKRFESRSS-KESHKGNEQPSGVRRHGGNSVDLKGKNTFAVPRNVRALGWTTDKPKTLEQDDEKPKTNDEFRKLYFKG

A0A5D3CT38 Squamous cell carcinoma antigen recognized by T-cells 3 isoform X3

1.72e-46

86.21

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Query:  GHGTDKAGAGKRFESRSS-KESHKGNEQPSGVRRHGGNSVDLKGKNTFAVPRNVRALGWTTDKPKTLEQDDEKPKTNDEFRKLYFKG
        GHG D+AG GKRFESRSS KE HK NEQPSG+R+HGGNSV+LKGKNTFAVPRNVRALGWT DKPKTLEQDDE PK+NDEFRKLYFKG
Subjt:  GHGTDKAGAGKRFESRSS-KESHKGNEQPSGVRRHGGNSVDLKGKNTFAVPRNVRALGWTTDKPKTLEQDDEKPKTNDEFRKLYFKG

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT4G24270.1 EMBRYO DEFECTIVE 140

6.4e-11

44.83

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Query:  FLGHGTDKAGAGKRFESRSSKESHKGNEQPSGVRRHGGNSVDLKGKNTFAVPRNVRALGWTTDKPKTLEQDDEKPKTNDEFRKLYFK
        F   G D +G  K     S K       +  G R+  GN V+++GKNTFAVPRNV+ LG+TT KP      DE PK+NDEFR ++ K
Subjt:  FLGHGTDKAGAGKRFESRSSKESHKGNEQPSGVRRHGGNSVDLKGKNTFAVPRNVRALGWTTDKPKTLEQDDEKPKTNDEFRKLYFK

AT4G24270.2 EMBRYO DEFECTIVE 140

7.1e-10

45.68

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Query:  DKAGAGKRFESRSSKESHKGNEQPSGVRRHGGNSVDLKGKNTFAVPRNVRALGWTTDKPKTLEQDDEKPKTNDEFRKLYFK
        D +G  K     S K       +  G R+  GN V+++GKNTFAVPRNV+ LG+TT KP      DE PK+NDEFR ++ K
Subjt:  DKAGAGKRFESRSSKESHKGNEQPSGVRRHGGNSVDLKGKNTFAVPRNVRALGWTTDKPKTLEQDDEKPKTNDEFRKLYFK

Sequences

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CDS sequence

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AGATTGGTCTTTGAAATCATCAAAGGTTTTGAGATCACTTCATTTTTAGGCCATGGTACGGATAAAGCTGGTGCAGGCAAGAGATTTGAGTCGAGAAGTTCAAAGGAGTC
TCATAAAGGCAATGAGCAACCATCTGGGGTGAGGAGACATGGAGGGAACAGTGTTGATCTCAAGGGAAAGAACACGTTTGCGGTGCCTAGAAATGTTAGAGCACTTGGTT
GGACTACAGATAAACCTAAAACCTTGGAACAAGATGATGAGAAGCCAAAAACCAATGATGAATTCAGGAAACTGTATTTTAAAGGCTGA

mRNA sequence

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Protein sequence

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RLVFEIIKGFEITSFLGHGTDKAGAGKRFESRSSKESHKGNEQPSGVRRHGGNSVDLKGKNTFAVPRNVRALGWTTDKPKTLEQDDEKPKTNDEFRKLYFKG

Cucsat.G10204 (gene) of Cucumber (B10) v3 genome