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Cucsat.G10345 (gene) of Cucumber (B10) v3 genome

Gene IDCucsat.G10345
OrganismCucumis sativus L. var. sativus cv. B10 (Cucumber (B10) v3)
Description40S ribosomal protein S27
Genome locationctg1675:208556..210616
RNA-Seq ExpressionCucsat.G10345
SyntenyCucsat.G10345
Gene Ontology termsGO:0000028 - ribosomal small subunit assembly (biological process)
GO:0006412 - translation (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0022627 - cytosolic small ribosomal subunit (cellular component)
GO:0043231 - intracellular membrane-bounded organelle (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0003729 - mRNA binding (molecular function)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR000592 - Ribosomal protein S27
IPR011332 - Zinc-binding ribosomal protein
IPR023407 - Ribosomal protein S27, zinc-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
EOA24972.1 hypothetical protein CARUB_v10018269mg, partial [Capsella rubella]3.74e-5794.57Show/hide
Query:  LSSFFKMVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFRRKGD
        L S  KMVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQT+LCQPTGG+ARLTEGCSFRRKGD
Subjt:  LSSFFKMVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFRRKGD

KAF5449188.1 hypothetical protein F2P56_029664, partial [Juglans regia]4.41e-5894.68Show/hide
Query:  RLLSSFFKMVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFRRKGD
        R+    FKMVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFRRKGD
Subjt:  RLLSSFFKMVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFRRKGD

XP_002512685.1 40S ribosomal protein S27-2 [Ricinus communis]1.24e-56100Show/hide
Query:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFRRKGD
        MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFRRKGD
Subjt:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFRRKGD

XP_010926238.2 40S ribosomal protein S27-2 [Elaeis guineensis]3.00e-5777.42Show/hide
Query:  LGFLLSPSAVVSFFRLAFQVF----PLFFRRLLSSFFKMVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQ
        LGF  SPS +VS  +L FQ      P+       +F++MVL NDIDLLNPPAELEK++HKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQ
Subjt:  LGFLLSPSAVVSFFRLAFQVF----PLFFRRLLSSFFKMVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQ

Query:  TVLCQPTGGRARLTEGCSFRRKGD
        TVLCQPTGGRARLTEGCSFRRKGD
Subjt:  TVLCQPTGGRARLTEGCSFRRKGD

XP_031384267.1 40S ribosomal protein S27-2 [Punica granatum]1.76e-5698.84Show/hide
Query:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFRRKGD
        MVLQND+DLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFRRKGD
Subjt:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFRRKGD

TrEMBL top hitse value%identityAlignment
A0A6I9RH98 40S ribosomal protein S271.45e-5777.42Show/hide
Query:  LGFLLSPSAVVSFFRLAFQVF----PLFFRRLLSSFFKMVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQ
        LGF  SPS +VS  +L FQ      P+       +F++MVL NDIDLLNPPAELEK++HKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQ
Subjt:  LGFLLSPSAVVSFFRLAFQVF----PLFFRRLLSSFFKMVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQ

Query:  TVLCQPTGGRARLTEGCSFRRKGD
        TVLCQPTGGRARLTEGCSFRRKGD
Subjt:  TVLCQPTGGRARLTEGCSFRRKGD

A0A6J1JTM3 40S ribosomal protein S276.00e-57100Show/hide
Query:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFRRKGD
        MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFRRKGD
Subjt:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFRRKGD

A0A7C9CNB2 40S ribosomal protein S273.21e-5794.79Show/hide
Query:  FRRLLSSFFKMVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFRRKGD
        F  LLSS  KMVLQNDIDLLNPPAELEK+KHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFRRKGD
Subjt:  FRRLLSSFFKMVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFRRKGD

B9RG16 40S ribosomal protein S276.00e-57100Show/hide
Query:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFRRKGD
        MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFRRKGD
Subjt:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFRRKGD

R0FQY1 40S ribosomal protein S27 (Fragment)1.81e-5794.57Show/hide
Query:  LSSFFKMVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFRRKGD
        L S  KMVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQT+LCQPTGG+ARLTEGCSFRRKGD
Subjt:  LSSFFKMVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFRRKGD

SwissProt top hitse value%identityAlignment
O64650 40S ribosomal protein S27-12.7e-4192.86Show/hide
Query:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFRRK
        MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVV+CGNCQT+LC PTGG+A+LTEGCSFR+K
Subjt:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFRRK

P47903 40S ribosomal protein S276.9e-3784.88Show/hide
Query:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFRRKGD
        MVL +DIDLLNPPAELEK KHK KRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVV+CG+C +VLC PTG   RLTEGCSFRRK D
Subjt:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFRRKGD

Q8L953 40S ribosomal protein S27-33.5e-4194.05Show/hide
Query:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFRRK
        MVLQNDIDLL+PP ELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGG+ARL EGCSFR+K
Subjt:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFRRK

Q96564 40S ribosomal protein S271.2e-4194.19Show/hide
Query:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFRRKGD
        MVLQNDIDLLNPPAELEK KHK KRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVC  CQTVLCQPTGG+ARLTEGCSFRRKGD
Subjt:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFRRKGD

Q9M2F1 40S ribosomal protein S27-22.6e-4496.51Show/hide
Query:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFRRKGD
        MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQT+LCQPTGG+A+LTEGCSFRRKGD
Subjt:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFRRKGD

Arabidopsis top hitse value%identityAlignment
AT2G45710.1 Zinc-binding ribosomal protein family protein1.9e-4292.86Show/hide
Query:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFRRK
        MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVV+CGNCQT+LC PTGG+A+LTEGCSFR+K
Subjt:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFRRK

AT3G61110.1 ribosomal protein S271.8e-4596.51Show/hide
Query:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFRRKGD
        MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQT+LCQPTGG+A+LTEGCSFRRKGD
Subjt:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFRRKGD

AT3G61111.1 Zinc-binding ribosomal protein family protein1.2e-3681.4Show/hide
Query:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFRRKGD
        MVLQNDIDLLNPPAELEKRKHKLKRLV SPNS+FM V+C  C NITT+FSHSQTVVVCG CQ VLCQPTGG+A+LT GCSFR+  D
Subjt:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFRRKGD

AT5G47930.1 Zinc-binding ribosomal protein family protein2.5e-4294.05Show/hide
Query:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFRRK
        MVLQNDIDLL+PP ELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGG+ARL EGCSFR+K
Subjt:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFRRK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
AAACCGCCTCACCGCCTCACTCAAATCCTTCTATATATAAAGATTGAGGTTTTAGGGTTCTTGCTCTCTCCTTCTGCGGTCGTGAGCTTTTTTCGATTGGCTTTCCAGGT
TTTCCCTCTCTTCTTTCGCCGACTCCTTTCCAGTTTTTTCAAGATGGTTCTTCAAAACGATATTGATTTGCTGAATCCTCCTGCTGAGTTAGAGAAGAGGAAGCACAAGC
TCAAGCGTCTTGTGCAATCACCCAACTCCTTCTTCATGGATGTCAAGTGCCAAGGATGCTTCAACATTACCACTGTCTTCAGCCACTCTCAAACTGTTGTGGTATGCGGT
AACTGCCAGACAGTCTTGTGCCAGCCAACGGGAGGACGTGCTAGACTCACCGAGGGGTGTTCTTTCAGGAGAAAGGGTGATTGA
mRNA sequenceShow/hide mRNA sequence
AAACCGCCTCACCGCCTCACTCAAATCCTTCTATATATAAAGATTGAGGTTTTAGGGTTCTTGCTCTCTCCTTCTGCGGTCGTGAGCTTTTTTCGATTGGCTTTCCAGGT
TTTCCCTCTCTTCTTTCGCCGACTCCTTTCCAGTTTTTTCAAGATGGTTCTTCAAAACGATATTGATTTGCTGAATCCTCCTGCTGAGTTAGAGAAGAGGAAGCACAAGC
TCAAGCGTCTTGTGCAATCACCCAACTCCTTCTTCATGGATGTCAAGTGCCAAGGATGCTTCAACATTACCACTGTCTTCAGCCACTCTCAAACTGTTGTGGTATGCGGT
AACTGCCAGACAGTCTTGTGCCAGCCAACGGGAGGACGTGCTAGACTCACCGAGGGGTGTTCTTTCAGGAGAAAGGGTGATTGA
Protein sequenceShow/hide protein sequence
KPPHRLTQILLYIKIEVLGFLLSPSAVVSFFRLAFQVFPLFFRRLLSSFFKMVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCG
NCQTVLCQPTGGRARLTEGCSFRRKGD