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Cucsat.G10417 (gene) of Cucumber (B10) v3 genome

Gene IDCucsat.G10417
OrganismCucumis sativus L. var. sativus cv. B10 (Cucumber (B10) v3)
DescriptionReplication protein A 14 kDa subunit B-like
Genome locationctg1676:38997..41390
RNA-Seq ExpressionCucsat.G10417
SyntenyCucsat.G10417
Gene Ontology termsGO:0006260 - DNA replication (biological process)
GO:0006281 - DNA repair (biological process)
GO:0006310 - DNA recombination (biological process)
GO:0031981 - nuclear lumen (cellular component)
GO:0003677 - DNA binding (molecular function)
InterPro domainsIPR012340 - Nucleic acid-binding, OB-fold
IPR013970 - Replication factor A protein 3


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004135037.1 replication protein A 14 kDa subunit B [Cucumis sativus]2.74e-70100Show/hide
Query:  MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTIHGLPTVPHMNFVEVVGIAESNKTIKVEDWTDFGTTFDTASYNQLCQLANGE
        MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTIHGLPTVPHMNFVEVVGIAESNKTIKVEDWTDFGTTFDTASYNQLCQLANGE
Subjt:  MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTIHGLPTVPHMNFVEVVGIAESNKTIKVEDWTDFGTTFDTASYNQLCQLANGE

Query:  FRSLFI
        FRSLFI
Subjt:  FRSLFI

XP_008446755.1 PREDICTED: replication protein A 14 kDa subunit B-like [Cucumis melo]3.08e-6796.23Show/hide
Query:  MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTIHGLPTVPHMNFVEVVGIAESNKTIKVEDWTDFGTTFDTASYNQLCQLANGE
        MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTIHGLPTVPHMNFVEVVGIA+SNKTI VE WTDFGTTFDT SYNQLCQLANGE
Subjt:  MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTIHGLPTVPHMNFVEVVGIAESNKTIKVEDWTDFGTTFDTASYNQLCQLANGE

Query:  FRSLFI
        FRSLFI
Subjt:  FRSLFI

XP_022988152.1 replication protein A 14 kDa subunit B-like [Cucurbita maxima]1.24e-5784.91Show/hide
Query:  MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTIHGLPTVPHMNFVEVVGIAESNKTIKVEDWTDFGTTFDTASYNQLCQLANGE
        MDTSNPAVF NGELL+MH GRKIRAVVQVIQSD G+VTGKSTDEQ LT+HGLPTVP MNFVEVVGIAE NK I VE WTDFGT FD  SYNQLCQLANGE
Subjt:  MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTIHGLPTVPHMNFVEVVGIAESNKTIKVEDWTDFGTTFDTASYNQLCQLANGE

Query:  FRSLFI
        FRSLF+
Subjt:  FRSLFI

XP_023539791.1 replication protein A 14 kDa subunit B-like [Cucurbita pepo subsp. pepo]7.47e-5985.85Show/hide
Query:  MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTIHGLPTVPHMNFVEVVGIAESNKTIKVEDWTDFGTTFDTASYNQLCQLANGE
        MDTSNPAVF NGELL++H GRKIRAVVQVIQSDGG+VTGKSTDEQ LT+HGLPTVP MNFVEVVGIAE NK I VE WTDFGTTFD  SYNQLCQLANGE
Subjt:  MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTIHGLPTVPHMNFVEVVGIAESNKTIKVEDWTDFGTTFDTASYNQLCQLANGE

Query:  FRSLFI
        FRSLF+
Subjt:  FRSLFI

XP_038893019.1 replication protein A 14 kDa subunit B-like [Benincasa hispida]2.00e-6393.4Show/hide
Query:  MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTIHGLPTVPHMNFVEVVGIAESNKTIKVEDWTDFGTTFDTASYNQLCQLANGE
        MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTI GLPTVP MNFVEVVGIAE+NK I VE WTDFGTTFDT SYNQLCQLANGE
Subjt:  MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTIHGLPTVPHMNFVEVVGIAESNKTIKVEDWTDFGTTFDTASYNQLCQLANGE

Query:  FRSLFI
        FRSLFI
Subjt:  FRSLFI

TrEMBL top hitse value%identityAlignment
A0A0A0KRF2 Uncharacterized protein1.33e-70100Show/hide
Query:  MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTIHGLPTVPHMNFVEVVGIAESNKTIKVEDWTDFGTTFDTASYNQLCQLANGE
        MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTIHGLPTVPHMNFVEVVGIAESNKTIKVEDWTDFGTTFDTASYNQLCQLANGE
Subjt:  MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTIHGLPTVPHMNFVEVVGIAESNKTIKVEDWTDFGTTFDTASYNQLCQLANGE

Query:  FRSLFI
        FRSLFI
Subjt:  FRSLFI

A0A1S3BGM8 replication protein A 14 kDa subunit B-like1.49e-6796.23Show/hide
Query:  MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTIHGLPTVPHMNFVEVVGIAESNKTIKVEDWTDFGTTFDTASYNQLCQLANGE
        MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTIHGLPTVPHMNFVEVVGIA+SNKTI VE WTDFGTTFDT SYNQLCQLANGE
Subjt:  MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTIHGLPTVPHMNFVEVVGIAESNKTIKVEDWTDFGTTFDTASYNQLCQLANGE

Query:  FRSLFI
        FRSLFI
Subjt:  FRSLFI

A0A5A7SU42 Replication protein A 14 kDa subunit B-like1.49e-6796.23Show/hide
Query:  MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTIHGLPTVPHMNFVEVVGIAESNKTIKVEDWTDFGTTFDTASYNQLCQLANGE
        MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTIHGLPTVPHMNFVEVVGIA+SNKTI VE WTDFGTTFDT SYNQLCQLANGE
Subjt:  MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTIHGLPTVPHMNFVEVVGIAESNKTIKVEDWTDFGTTFDTASYNQLCQLANGE

Query:  FRSLFI
        FRSLFI
Subjt:  FRSLFI

A0A6J1D9X1 replication protein A 14 kDa subunit B-like3.17e-5378.3Show/hide
Query:  MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTIHGLPTVPHMNFVEVVGIAESNKTIKVEDWTDFGTTFDTASYNQLCQLANGE
        MDTSNPAVFVN ELL +H GRKIRAV QV +SDGG+VTGKSTDEQ+LT+HGLP VP MNFVEV+GIAESNK I VE  TDFG TFD  SYNQLCQLANGE
Subjt:  MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTIHGLPTVPHMNFVEVVGIAESNKTIKVEDWTDFGTTFDTASYNQLCQLANGE

Query:  FRSLFI
        F+S+F+
Subjt:  FRSLFI

A0A6J1JC99 replication protein A 14 kDa subunit B-like5.99e-5884.91Show/hide
Query:  MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTIHGLPTVPHMNFVEVVGIAESNKTIKVEDWTDFGTTFDTASYNQLCQLANGE
        MDTSNPAVF NGELL+MH GRKIRAVVQVIQSD G+VTGKSTDEQ LT+HGLPTVP MNFVEVVGIAE NK I VE WTDFGT FD  SYNQLCQLANGE
Subjt:  MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTIHGLPTVPHMNFVEVVGIAESNKTIKVEDWTDFGTTFDTASYNQLCQLANGE

Query:  FRSLFI
        FRSLF+
Subjt:  FRSLFI

SwissProt top hitse value%identityAlignment
Q6NLG7 Replication protein A 14 kDa subunit B8.5e-3259.43Show/hide
Query:  MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTIHGLPTVPHMNFVEVVGIAESNKTIKVEDWTDFGTTFDTASYNQLCQLANGE
        MDTS+PA FVNG LL  + G+K+RAV+QVI+SD G V GKSTD+QQ+ + G P  P   ++EV+GIAE++ TI+ E WT+FG +FD  +YN+LC+LANGE
Subjt:  MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTIHGLPTVPHMNFVEVVGIAESNKTIKVEDWTDFGTTFDTASYNQLCQLANGE

Query:  FRSLFI
        FR LFI
Subjt:  FRSLFI

Q9LXK1 Replication protein A 14 kDa subunit A5.7e-2855.14Show/hide
Query:  MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTIHG-LPTVPHMNFVEVVGIAESNKTIKVEDWTDFGTTFDTASYNQLCQLANG
        MDTS+P+ FVNG LL    G+K+R V+QV  S+ G V GKSTD+ Q+ + G  P  P   ++EV+GIAES+  I+ E WT+FG TFDT +YN+LC+LANG
Subjt:  MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTIHG-LPTVPHMNFVEVVGIAESNKTIKVEDWTDFGTTFDTASYNQLCQLANG

Query:  EFRSLFI
        EF+ LFI
Subjt:  EFRSLFI

Q9SDK9 Replication protein A 14 kDa subunit3.7e-2752.83Show/hide
Query:  MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTIHGLPTVPHMNFVEVVGIAESNKTIKVEDWTDFGTTFDTASYNQLCQLANGE
        MDTS PA FVNGE+L M  GR++R VVQ  + +GG++ G+STD  QLTI G    P  ++VE++GIAE N+ I+ E  TDFG  FD A +N LC+LANG+
Subjt:  MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTIHGLPTVPHMNFVEVVGIAESNKTIKVEDWTDFGTTFDTASYNQLCQLANGE

Query:  FRSLFI
         + LF+
Subjt:  FRSLFI

Arabidopsis top hitse value%identityAlignment
AT3G52630.1 Nucleic acid-binding, OB-fold-like protein4.0e-2955.14Show/hide
Query:  MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTIHG-LPTVPHMNFVEVVGIAESNKTIKVEDWTDFGTTFDTASYNQLCQLANG
        MDTS+P+ FVNG LL    G+K+R V+QV  S+ G V GKSTD+ Q+ + G  P  P   ++EV+GIAES+  I+ E WT+FG TFDT +YN+LC+LANG
Subjt:  MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTIHG-LPTVPHMNFVEVVGIAESNKTIKVEDWTDFGTTFDTASYNQLCQLANG

Query:  EFRSLFI
        EF+ LFI
Subjt:  EFRSLFI

AT3G52630.2 Nucleic acid-binding, OB-fold-like protein4.0e-2955.14Show/hide
Query:  MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTIHG-LPTVPHMNFVEVVGIAESNKTIKVEDWTDFGTTFDTASYNQLCQLANG
        MDTS+P+ FVNG LL    G+K+R V+QV  S+ G V GKSTD+ Q+ + G  P  P   ++EV+GIAES+  I+ E WT+FG TFDT +YN+LC+LANG
Subjt:  MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTIHG-LPTVPHMNFVEVVGIAESNKTIKVEDWTDFGTTFDTASYNQLCQLANG

Query:  EFRSLFI
        EF+ LFI
Subjt:  EFRSLFI

AT4G18590.1 Nucleic acid-binding, OB-fold-like protein6.0e-3359.43Show/hide
Query:  MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTIHGLPTVPHMNFVEVVGIAESNKTIKVEDWTDFGTTFDTASYNQLCQLANGE
        MDTS+PA FVNG LL  + G+K+RAV+QVI+SD G V GKSTD+QQ+ + G P  P   ++EV+GIAE++ TI+ E WT+FG +FD  +YN+LC+LANGE
Subjt:  MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTIHGLPTVPHMNFVEVVGIAESNKTIKVEDWTDFGTTFDTASYNQLCQLANGE

Query:  FRSLFI
        FR LFI
Subjt:  FRSLFI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GTCGTCTCACAGGTACGCATTAGAAATGGTTCTGAGCCACCAGATTTAGGGTTTGAGACTCTCTCCTACTTAGATCGTTCAGATATGGATACGTCAAACCCTGCAGTTTT
TGTTAATGGTGAGTTATTGAGCATGCATTGTGGAAGAAAGATTCGAGCAGTGGTTCAAGTTATCCAAAGTGATGGTGGAATTGTTACGGGAAAGTCTACGGATGAACAAC
AATTGACTATTCATGGCTTGCCCACGGTCCCTCACATGAACTTCGTAGAGGTAGTTGGTATTGCTGAAAGCAACAAGACCATCAAGGTTGAAGATTGGACAGACTTTGGA
ACCACTTTTGATACTGCATCTTACAATCAGCTATGCCAACTTGCAAATGGGGAATTCAGAAGTTTATTTATTTAG
mRNA sequenceShow/hide mRNA sequence
GTCGTCTCACAGGTACGCATTAGAAATGGTTCTGAGCCACCAGATTTAGGGTTTGAGACTCTCTCCTACTTAGATCGTTCAGATATGGATACGTCAAACCCTGCAGTTTT
TGTTAATGGTGAGTTATTGAGCATGCATTGTGGAAGAAAGATTCGAGCAGTGGTTCAAGTTATCCAAAGTGATGGTGGAATTGTTACGGGAAAGTCTACGGATGAACAAC
AATTGACTATTCATGGCTTGCCCACGGTCCCTCACATGAACTTCGTAGAGGTAGTTGGTATTGCTGAAAGCAACAAGACCATCAAGGTTGAAGATTGGACAGACTTTGGA
ACCACTTTTGATACTGCATCTTACAATCAGCTATGCCAACTTGCAAATGGGGAATTCAGAAGTTTATTTATTTAG
Protein sequenceShow/hide protein sequence
VVSQVRIRNGSEPPDLGFETLSYLDRSDMDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTIHGLPTVPHMNFVEVVGIAESNKTIKVEDWTDFG
TTFDTASYNQLCQLANGEFRSLFI