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Cucsat.G10421 (gene) of Cucumber (B10) v3 genome

Gene IDCucsat.G10421
OrganismCucumis sativus L. var. sativus cv. B10 (Cucumber (B10) v3)
Descriptionglycine-rich RNA-binding protein GRP1A-like
Genome locationctg1676:11011..14468
RNA-Seq ExpressionCucsat.G10421
SyntenyCucsat.G10421
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008446752.1 PREDICTED: uncharacterized protein LOC103489382 [Cucumis melo]1.97e-7584.42Show/hide
Query:  RRGIRLIFLLFCSTLAISSAALQQQIFPTATESNYQQKTYTKKHGKYGVTNQINRRYSSSAITVSNVIRRGSGSGSGGGGGSGSAAAAGGGENGG-SRPR
        RRGIRLIFLLFCSTLAISSAALQQQIFPTATESNYQQKTYT+K GKYGVTNQI+RRYS+SAITVSNVIRR +G           AAAAGGGENGG SRP 
Subjt:  RRGIRLIFLLFCSTLAISSAALQQQIFPTATESNYQQKTYTKKHGKYGVTNQINRRYSSSAITVSNVIRRGSGSGSGGGGGSGSAAAAGGGENGG-SRPR

Query:  TGGGTAVIPVYAAGSAQAHHRQGRAHNAGNSYENNMGLLVAAVLAAIAHLCRVF
        TGGGTAVIPVYAAGSAQA HRQGR HNAGN YENN GLLVAAVLAAIAHLCRV+
Subjt:  TGGGTAVIPVYAAGSAQAHHRQGRAHNAGNSYENNMGLLVAAVLAAIAHLCRVF

XP_011655831.2 glycine-rich protein DOT1 [Cucumis sativus]4.53e-9598.73Show/hide
Query:  MGRRRGIRLIFLLFCSTLAISSAALQQQIFPTATESNYQQKTYTKKHGKYGVTNQINRRYSSSAITVSNVIRRGSGSGSG--GGGGSGSAAAAGGGENGG
        MGRRRGIRLIFLLFCSTLAISSAALQQQIFPTATESNYQQKTYTKKHGKYGVTNQINRRYSSSAITVSNVIRRGSGSGSG  GGGGSGSAAAAGGGENGG
Subjt:  MGRRRGIRLIFLLFCSTLAISSAALQQQIFPTATESNYQQKTYTKKHGKYGVTNQINRRYSSSAITVSNVIRRGSGSGSG--GGGGSGSAAAAGGGENGG

Query:  SRPRTGGGTAVIPVYAAGSAQAHHRQGRAHNAGNSYENNMGLLVAAVLAAIAHLCRVF
        SRPRTGGGTAVIPVYAAGSAQAHHRQGRAHNAGNSYENNMGLLVAAVLAAIAHLCRVF
Subjt:  SRPRTGGGTAVIPVYAAGSAQAHHRQGRAHNAGNSYENNMGLLVAAVLAAIAHLCRVF

XP_022957462.1 glycine-rich RNA-binding protein GRP1A-like [Cucurbita moschata]4.53e-5065.82Show/hide
Query:  MGRRRGIRLIFLLFCSTLAISSAALQQQIFPTATESNYQQKTYTKKHGKYGVTNQINRRYSSSAITVSNVIRRGSGSGSGGGGGSGSAAAAGGGENGGS-
        MGRRR + L+FLLFCST+   S+ALQQQI PT  ESNY QKT  +KHGK GVTN+I+  YS+ AITVS  I  GS              AAGGGENGG  
Subjt:  MGRRRGIRLIFLLFCSTLAISSAALQQQIFPTATESNYQQKTYTKKHGKYGVTNQINRRYSSSAITVSNVIRRGSGSGSGGGGGSGSAAAAGGGENGGS-

Query:  RPRTGGG-TAVIPVYAAGSAQAHHRQGRAHNAGNSYENNMGLLVAAVLAAIAHLCRVF
        RP+ GGG  AVIPVYAAGSAQAHHRQGR  NAGN YENNMGLLVA+VLAAI HL  VF
Subjt:  RPRTGGG-TAVIPVYAAGSAQAHHRQGRAHNAGNSYENNMGLLVAAVLAAIAHLCRVF

XP_023517064.1 glycine-rich RNA-binding protein GRP1A-like [Cucurbita pepo subsp. pepo]1.12e-5066.46Show/hide
Query:  MGRRRGIRLIFLLFCSTLAISSAALQQQIFPTATESNYQQKTYTKKHGKYGVTNQINRRYSSSAITVSNVIRRGSGSGSGGGGGSGSAAAAGGGENGGS-
        MGRRR + L+FLLFCST+   S+ALQQQI PT  ESNY QKT  +KHGK GVTN+I+  YS+ AITVS  I  GS              AAGGGENGG  
Subjt:  MGRRRGIRLIFLLFCSTLAISSAALQQQIFPTATESNYQQKTYTKKHGKYGVTNQINRRYSSSAITVSNVIRRGSGSGSGGGGGSGSAAAAGGGENGGS-

Query:  RPRTGGG-TAVIPVYAAGSAQAHHRQGRAHNAGNSYENNMGLLVAAVLAAIAHLCRVF
        RP+ GGG  AVIPVYAAGSAQAHHRQGR  NAGN YENNMGLLVA+VLAAIAHL  VF
Subjt:  RPRTGGG-TAVIPVYAAGSAQAHHRQGRAHNAGNSYENNMGLLVAAVLAAIAHLCRVF

XP_038892711.1 uncharacterized protein LOC120081693 [Benincasa hispida]1.02e-6073.25Show/hide
Query:  MGRRRGIRLIFLLFCSTLAISSAALQQQIFPTATESNYQQKTYTKKHGKYGVTNQINRRYSSSAITVSNVIRRGSGSGSGGGGGSGSAAAAGGGENGG-S
        MGRRR +RLI LL CST+AISSAALQQQIFPT  ESNYQQKTYT+K  K G+TNQI RRYS++ ITVSN I +GS             A AGGGENGG S
Subjt:  MGRRRGIRLIFLLFCSTLAISSAALQQQIFPTATESNYQQKTYTKKHGKYGVTNQINRRYSSSAITVSNVIRRGSGSGSGGGGGSGSAAAAGGGENGG-S

Query:  RPRTGGGTAVIPVYAAGSAQAHHRQGRAHNAGNSYENNMGLLVAAVLAAIAHLCRVF
        RP  GGGTAVIPVYAAGSAQAHHRQGR HNAGN +ENN GLLVAAVLAAIAHL  VF
Subjt:  RPRTGGGTAVIPVYAAGSAQAHHRQGRAHNAGNSYENNMGLLVAAVLAAIAHLCRVF

TrEMBL top hitse value%identityAlignment
A0A0A0KUR6 Uncharacterized protein1.57e-9498.72Show/hide
Query:  MGRRRGIRLIFLLFCSTLAISSAALQQQIFPTATESNYQQKTYTKKHGKYGVTNQINRRYSSSAITVSNVIRRGSGSGSGGGGGSGSAAAAGGGENGGSR
        MGRRRGIRLIFLLFCSTLAISSAALQQQIFPTATESNYQQKTYTKKHGKYGVTNQINRRYSSSAITVSNVIRRGSGSG  GGGGSGSAAAAGGGENGGSR
Subjt:  MGRRRGIRLIFLLFCSTLAISSAALQQQIFPTATESNYQQKTYTKKHGKYGVTNQINRRYSSSAITVSNVIRRGSGSGSGGGGGSGSAAAAGGGENGGSR

Query:  PRTGGGTAVIPVYAAGSAQAHHRQGRAHNAGNSYENNMGLLVAAVLAAIAHLCRVF
        PRTGGGTAVIPVYAAGSAQAHHRQGRAHNAGNSYENNMGLLVAAVLAAIAHLCRVF
Subjt:  PRTGGGTAVIPVYAAGSAQAHHRQGRAHNAGNSYENNMGLLVAAVLAAIAHLCRVF

A0A1S3BFU8 uncharacterized protein LOC1034893829.53e-7684.42Show/hide
Query:  RRGIRLIFLLFCSTLAISSAALQQQIFPTATESNYQQKTYTKKHGKYGVTNQINRRYSSSAITVSNVIRRGSGSGSGGGGGSGSAAAAGGGENGG-SRPR
        RRGIRLIFLLFCSTLAISSAALQQQIFPTATESNYQQKTYT+K GKYGVTNQI+RRYS+SAITVSNVIRR +G           AAAAGGGENGG SRP 
Subjt:  RRGIRLIFLLFCSTLAISSAALQQQIFPTATESNYQQKTYTKKHGKYGVTNQINRRYSSSAITVSNVIRRGSGSGSGGGGGSGSAAAAGGGENGG-SRPR

Query:  TGGGTAVIPVYAAGSAQAHHRQGRAHNAGNSYENNMGLLVAAVLAAIAHLCRVF
        TGGGTAVIPVYAAGSAQA HRQGR HNAGN YENN GLLVAAVLAAIAHLCRV+
Subjt:  TGGGTAVIPVYAAGSAQAHHRQGRAHNAGNSYENNMGLLVAAVLAAIAHLCRVF

A0A5A7SUI0 Uncharacterized protein9.53e-7684.42Show/hide
Query:  RRGIRLIFLLFCSTLAISSAALQQQIFPTATESNYQQKTYTKKHGKYGVTNQINRRYSSSAITVSNVIRRGSGSGSGGGGGSGSAAAAGGGENGG-SRPR
        RRGIRLIFLLFCSTLAISSAALQQQIFPTATESNYQQKTYT+K GKYGVTNQI+RRYS+SAITVSNVIRR +G           AAAAGGGENGG SRP 
Subjt:  RRGIRLIFLLFCSTLAISSAALQQQIFPTATESNYQQKTYTKKHGKYGVTNQINRRYSSSAITVSNVIRRGSGSGSGGGGGSGSAAAAGGGENGG-SRPR

Query:  TGGGTAVIPVYAAGSAQAHHRQGRAHNAGNSYENNMGLLVAAVLAAIAHLCRVF
        TGGGTAVIPVYAAGSAQA HRQGR HNAGN YENN GLLVAAVLAAIAHLCRV+
Subjt:  TGGGTAVIPVYAAGSAQAHHRQGRAHNAGNSYENNMGLLVAAVLAAIAHLCRVF

A0A6J1GZ71 glycine-rich RNA-binding protein GRP1A-like2.20e-5065.82Show/hide
Query:  MGRRRGIRLIFLLFCSTLAISSAALQQQIFPTATESNYQQKTYTKKHGKYGVTNQINRRYSSSAITVSNVIRRGSGSGSGGGGGSGSAAAAGGGENGGS-
        MGRRR + L+FLLFCST+   S+ALQQQI PT  ESNY QKT  +KHGK GVTN+I+  YS+ AITVS  I  GS              AAGGGENGG  
Subjt:  MGRRRGIRLIFLLFCSTLAISSAALQQQIFPTATESNYQQKTYTKKHGKYGVTNQINRRYSSSAITVSNVIRRGSGSGSGGGGGSGSAAAAGGGENGGS-

Query:  RPRTGGG-TAVIPVYAAGSAQAHHRQGRAHNAGNSYENNMGLLVAAVLAAIAHLCRVF
        RP+ GGG  AVIPVYAAGSAQAHHRQGR  NAGN YENNMGLLVA+VLAAI HL  VF
Subjt:  RPRTGGG-TAVIPVYAAGSAQAHHRQGRAHNAGNSYENNMGLLVAAVLAAIAHLCRVF

A0A6J1JB47 uncharacterized protein LOC1114851591.46e-4864.56Show/hide
Query:  MGRRRGIRLIFLLFCSTLAISSAALQQQIFPTATESNYQQKTYTKKHGKYGVTNQINRRYSSSAITVSNVIRRGSGSGSGGGGGSGSAAAAGGGENGGS-
        MGRRR + L+FLLFCST+   S+A QQQI PT  E NY QKT  +KHG+ GVTN+I+  YS+ AITVS  I  GS              AAGGGENGG  
Subjt:  MGRRRGIRLIFLLFCSTLAISSAALQQQIFPTATESNYQQKTYTKKHGKYGVTNQINRRYSSSAITVSNVIRRGSGSGSGGGGGSGSAAAAGGGENGGS-

Query:  RPRTGGG-TAVIPVYAAGSAQAHHRQGRAHNAGNSYENNMGLLVAAVLAAIAHLCRVF
        RP+ GGG  AVIPVYAAGSAQAHHRQGR  NAGN YENNMGLLVA+VLAAIAHL  VF
Subjt:  RPRTGGG-TAVIPVYAAGSAQAHHRQGRAHNAGNSYENNMGLLVAAVLAAIAHLCRVF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGAAGAAGAAGAGGTATAAGATTGATTTTCTTACTGTTTTGTTCTACCTTGGCCATTTCATCTGCTGCTCTCCAACAACAAATCTTCCCAACGGCAACAGAGTCTAA
TTACCAACAGAAAACTTACACAAAAAAACATGGTAAATATGGGGTTACTAACCAGATTAACAGAAGATACAGTTCAAGTGCAATCACCGTTTCTAATGTGATTCGTCGTG
GAAGTGGAAGTGGAAGTGGAGGTGGAGGTGGAAGTGGAAGTGCAGCCGCTGCCGGCGGTGGGGAAAATGGTGGCAGTAGACCTCGTACAGGAGGAGGTACAGCCGTGATC
CCTGTTTATGCAGCTGGTTCAGCACAAGCACATCACCGCCAAGGTCGAGCACATAATGCAGGAAATAGCTATGAGAACAATATGGGGCTTCTGGTAGCTGCAGTTTTGGC
CGCCATTGCTCATCTCTGTAGAGTTTTCTGA
mRNA sequenceShow/hide mRNA sequence
ATGGGAAGAAGAAGAGGTATAAGATTGATTTTCTTACTGTTTTGTTCTACCTTGGCCATTTCATCTGCTGCTCTCCAACAACAAATCTTCCCAACGGCAACAGAGTCTAA
TTACCAACAGAAAACTTACACAAAAAAACATGGTAAATATGGGGTTACTAACCAGATTAACAGAAGATACAGTTCAAGTGCAATCACCGTTTCTAATGTGATTCGTCGTG
GAAGTGGAAGTGGAAGTGGAGGTGGAGGTGGAAGTGGAAGTGCAGCCGCTGCCGGCGGTGGGGAAAATGGTGGCAGTAGACCTCGTACAGGAGGAGGTACAGCCGTGATC
CCTGTTTATGCAGCTGGTTCAGCACAAGCACATCACCGCCAAGGTCGAGCACATAATGCAGGAAATAGCTATGAGAACAATATGGGGCTTCTGGTAGCTGCAGTTTTGGC
CGCCATTGCTCATCTCTGTAGAGTTTTCTGA
Protein sequenceShow/hide protein sequence
MGRRRGIRLIFLLFCSTLAISSAALQQQIFPTATESNYQQKTYTKKHGKYGVTNQINRRYSSSAITVSNVIRRGSGSGSGGGGGSGSAAAAGGGENGGSRPRTGGGTAVI
PVYAAGSAQAHHRQGRAHNAGNSYENNMGLLVAAVLAAIAHLCRVF