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Cucsat.G10422 (gene) of Cucumber (B10) v3 genome

Gene IDCucsat.G10422
OrganismCucumis sativus L. var. sativus cv. B10 (Cucumber (B10) v3)
Descriptiontransformer-2 protein homolog alpha-like
Genome locationctg1676:15740..19761
RNA-Seq ExpressionCucsat.G10422
SyntenyCucsat.G10422
Gene Ontology termsGO:0007129 - synapsis (biological process)
GO:0036297 - interstrand cross-link repair (biological process)
GO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process)
GO:0005634 - nucleus (cellular component)
GO:0004528 - phosphodiesterase I activity (molecular function)
GO:0008409 - 5'-3' exonuclease activity (molecular function)
GO:0017108 - 5'-flap endonuclease activity (molecular function)
GO:0046872 - metal ion binding (molecular function)
GO:0070336 - flap-structured DNA binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KGN52185.1 hypothetical protein Csa_009431 [Cucumis sativus]7.93e-0537.5Show/hide
Query:  MGRRRGEMAFILVILCSSMMA-SFAFTQLFTIDSKQHITVREHNNSRF-----VERRGGGRGVIPIYVAGASSGRHGKHSHSLGNR------PNNYIEFI
        MGRRR E A IL+++ SSM+  SFAF QL   D+ +H    EH   ++     +E R G    IP ++A   S   G    S+G          N ++FI
Subjt:  MGRRRGEMAFILVILCSSMMA-SFAFTQLFTIDSKQHITVREHNNSRF-----VERRGGGRGVIPIYVAGASSGRHGKHSHSLGNR------PNNYIEFI

Query:  IIGVSISIALLC
           VSIS+A LC
Subjt:  IIGVSISIALLC

KGN52709.2 hypothetical protein Csa_008507 [Cucumis sativus]3.09e-65100Show/hide
Query:  MGRRRGEMAFILVILCSSMMASFAFTQLFTIDSKQHITVREHNNSRFVERRGGGRGVIPIYVAGASSGRHGKHSHSLGNRPNNYIEFIIIGVSISIALLC
        MGRRRGEMAFILVILCSSMMASFAFTQLFTIDSKQHITVREHNNSRFVERRGGGRGVIPIYVAGASSGRHGKHSHSLGNRPNNYIEFIIIGVSISIALLC
Subjt:  MGRRRGEMAFILVILCSSMMASFAFTQLFTIDSKQHITVREHNNSRFVERRGGGRGVIPIYVAGASSGRHGKHSHSLGNRPNNYIEFIIIGVSISIALLC

Query:  RFI
        RFI
Subjt:  RFI

KGN52711.2 hypothetical protein Csa_008218, partial [Cucumis sativus]4.28e-0436.94Show/hide
Query:  MGRRRGEMAFILVILCSSMMA-SFAFTQLFTIDSKQHITVREHNNSRF-----VERRGGGRGVIPIYVA-----GASSGRHGKHSHSLGNRPNNYIEFII
        MGRR+  +A IL+++ SSM+  S AF QLF  D+  H    EH   ++     VE R G    IP ++A     G   G  G+ + + G    N +E I 
Subjt:  MGRRRGEMAFILVILCSSMMA-SFAFTQLFTIDSKQHITVREHNNSRF-----VERRGGGRGVIPIYVA-----GASSGRHGKHSHSLGNRPNNYIEFII

Query:  IGVSISIALLC
          VSIS+A LC
Subjt:  IGVSISIALLC

XP_008446753.1 PREDICTED: transformer-2 protein homolog alpha-like [Cucumis melo]1.55e-0838.53Show/hide
Query:  RRRGEMAFILVILCSSMMASFAFTQLFTIDSKQHIT---VREHNNSRFVERRGGGRGVIPIYVA--------GASSGRHGKHSHSLGNRPNNYIEFIIIG
        RRR E+A IL+++ SSM+ SFAF QLF  DS +H     + +H     +E R G    IPI+          G   G  G  + + G    NY++FI   
Subjt:  RRRGEMAFILVILCSSMMASFAFTQLFTIDSKQHIT---VREHNNSRFVERRGGGRGVIPIYVA--------GASSGRHGKHSHSLGNRPNNYIEFIIIG

Query:  VSISIALLC
        VSIS+A LC
Subjt:  VSISIALLC

XP_023550250.1 glycine-rich RNA-binding protein 2-like [Cucurbita pepo subsp. pepo]4.49e-0435.77Show/hide
Query:  MAFILVILCSSMMASFAFTQLFTIDSKQHITVREHNNS----------RFVERRGGG---------------------------RGVIPIYVAGASSG--
        MA IL++LCSSM+ASFAF QLFT D  +     EH             R V R GGG                           RG  P   +G   G  
Subjt:  MAFILVILCSSMMASFAFTQLFTIDSKQHITVREHNNS----------RFVERRGGG---------------------------RGVIPIYVAGASSG--

Query:  --RHGKHSHSLGNRPNNYIEFIIIGVSISIALLCRFI
          R G HS + GN   N + FI+ GVS S+A L R I
Subjt:  --RHGKHSHSLGNRPNNYIEFIIIGVSISIALLCRFI

TrEMBL top hitse value%identityAlignment
A0A0A0KRC8 Uncharacterized protein3.84e-0537.5Show/hide
Query:  MGRRRGEMAFILVILCSSMMA-SFAFTQLFTIDSKQHITVREHNNSRF-----VERRGGGRGVIPIYVAGASSGRHGKHSHSLGNR------PNNYIEFI
        MGRRR E A IL+++ SSM+  SFAF QL   D+ +H    EH   ++     +E R G    IP ++A   S   G    S+G          N ++FI
Subjt:  MGRRRGEMAFILVILCSSMMA-SFAFTQLFTIDSKQHITVREHNNSRF-----VERRGGGRGVIPIYVAGASSGRHGKHSHSLGNR------PNNYIEFI

Query:  IIGVSISIALLC
           VSIS+A LC
Subjt:  IIGVSISIALLC

A0A0A0KTE6 Uncharacterized protein5.60e-53100Show/hide
Query:  MMASFAFTQLFTIDSKQHITVREHNNSRFVERRGGGRGVIPIYVAGASSGRHGKHSHSLGNRPNNYIEFIIIGVSISIALLCRFI
        MMASFAFTQLFTIDSKQHITVREHNNSRFVERRGGGRGVIPIYVAGASSGRHGKHSHSLGNRPNNYIEFIIIGVSISIALLCRFI
Subjt:  MMASFAFTQLFTIDSKQHITVREHNNSRFVERRGGGRGVIPIYVAGASSGRHGKHSHSLGNRPNNYIEFIIIGVSISIALLCRFI

A0A0A0KWM3 Uncharacterized protein1.01e-0436.94Show/hide
Query:  MGRRRGEMAFILVILCSSMMA-SFAFTQLFTIDSKQHITVREHNNSRF-----VERRGGGRGVIPIYVA-----GASSGRHGKHSHSLGNRPNNYIEFII
        MGRR+  +A IL+++ SSM+  S AF QLF  D+  H    EH   ++     VE R G    IP ++A     G   G  G+ + + G    N ++FI 
Subjt:  MGRRRGEMAFILVILCSSMMA-SFAFTQLFTIDSKQHITVREHNNSRF-----VERRGGGRGVIPIYVA-----GASSGRHGKHSHSLGNRPNNYIEFII

Query:  IGVSISIALLC
          VSIS+A LC
Subjt:  IGVSISIALLC

A0A1S3BFU5 transformer-2 protein homolog alpha-like7.50e-0938.53Show/hide
Query:  RRRGEMAFILVILCSSMMASFAFTQLFTIDSKQHIT---VREHNNSRFVERRGGGRGVIPIYVA--------GASSGRHGKHSHSLGNRPNNYIEFIIIG
        RRR E+A IL+++ SSM+ SFAF QLF  DS +H     + +H     +E R G    IPI+          G   G  G  + + G    NY++FI   
Subjt:  RRRGEMAFILVILCSSMMASFAFTQLFTIDSKQHIT---VREHNNSRFVERRGGGRGVIPIYVA--------GASSGRHGKHSHSLGNRPNNYIEFIIIG

Query:  VSISIALLC
        VSIS+A LC
Subjt:  VSISIALLC

A0A6J1J9S2 glycine-rich protein DOT1-like9.28e-0444Show/hide
Query:  RRRGEMAFILVILCSSMMASFAFTQLFTIDSKQHITVREHNNSRFVERRGGGRGVIPIYVA-----GASSGRHGK
        RRR EMA IL++L SSM+ASFAF QLFT D      + E   S   E+ G    VIP+++      G  SG  G+
Subjt:  RRRGEMAFILVILCSSMMASFAFTQLFTIDSKQHITVREHNNSRFVERRGGGRGVIPIYVA-----GASSGRHGK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGAAGAAGAAGAGGAGAGATGGCATTCATTTTGGTAATTCTTTGTTCATCTATGATGGCTTCCTTTGCTTTCACACAACTCTTCACAATAGATTCTAAACAGCATAT
AACTGTTAGAGAACACAATAATTCAAGATTTGTTGAACGTCGAGGGGGAGGTAGGGGAGTGATCCCAATATATGTGGCTGGCGCTTCATCAGGCCGTCATGGAAAGCATA
GCCACAGCCTTGGAAATCGTCCTAACAACTATATAGAGTTTATAATAATTGGTGTTTCCATCTCTATTGCACTTTTGTGTAGATTTATATGA
mRNA sequenceShow/hide mRNA sequence
ATGGGAAGAAGAAGAGGAGAGATGGCATTCATTTTGGTAATTCTTTGTTCATCTATGATGGCTTCCTTTGCTTTCACACAACTCTTCACAATAGATTCTAAACAGCATAT
AACTGTTAGAGAACACAATAATTCAAGATTTGTTGAACGTCGAGGGGGAGGTAGGGGAGTGATCCCAATATATGTGGCTGGCGCTTCATCAGGCCGTCATGGAAAGCATA
GCCACAGCCTTGGAAATCGTCCTAACAACTATATAGAGTTTATAATAATTGGTGTTTCCATCTCTATTGCACTTTTGTGTAGATTTATATGA
Protein sequenceShow/hide protein sequence
MGRRRGEMAFILVILCSSMMASFAFTQLFTIDSKQHITVREHNNSRFVERRGGGRGVIPIYVAGASSGRHGKHSHSLGNRPNNYIEFIIIGVSISIALLCRFI