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Cucsat.G10423 (gene) of Cucumber (B10) v3 genome

Gene IDCucsat.G10423
OrganismCucumis sativus L. var. sativus cv. B10 (Cucumber (B10) v3)
Descriptiontransformer-2 protein homolog alpha-like
Genome locationctg1676:21422..22133
RNA-Seq ExpressionCucsat.G10423
SyntenyCucsat.G10423
Gene Ontology termsGO:0036297 - interstrand cross-link repair (biological process)
GO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process)
GO:0005634 - nucleus (cellular component)
GO:0004528 - phosphodiesterase I activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
GO:0008409 - 5'-3' exonuclease activity (molecular function)
GO:0016818 - hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides (molecular function)
GO:0017108 - 5'-flap endonuclease activity (molecular function)
GO:0070336 - flap-structured DNA binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KGN52185.1 hypothetical protein Csa_009431 [Cucumis sativus]3.43e-74100Show/hide
Query:  MGRRRTETALILILIYSSMLPFSFAFKQLSLTDNSKHQESEHMEKQYGRRYNIEGRHGYTDGIPEHIAITHSEGRGGVGVSVGGNGAAGIHDQNCMKFIA
        MGRRRTETALILILIYSSMLPFSFAFKQLSLTDNSKHQESEHMEKQYGRRYNIEGRHGYTDGIPEHIAITHSEGRGGVGVSVGGNGAAGIHDQNCMKFIA
Subjt:  MGRRRTETALILILIYSSMLPFSFAFKQLSLTDNSKHQESEHMEKQYGRRYNIEGRHGYTDGIPEHIAITHSEGRGGVGVSVGGNGAAGIHDQNCMKFIA

Query:  AAVSISVAYLCGLI
        AAVSISVAYLCGLI
Subjt:  AAVSISVAYLCGLI

KGN52711.2 hypothetical protein Csa_008218, partial [Cucumis sativus]1.29e-5382.46Show/hide
Query:  MGRRRTETALILILIYSSMLPFSFAFKQLSLTDNSKHQESEHMEKQYGRRYNIEGRHGYTDGIPEHIAITHSEGRGGVGVSVGGNGAAGIHDQNCMKFIA
        MGRR+   ALILILIYSSMLPFS AFKQL LTDNS HQESEHMEKQYGRRYN+EGRHGYT+GIP HIAIT   GRGG G   G NGAAGIHDQNCM+ IA
Subjt:  MGRRRTETALILILIYSSMLPFSFAFKQLSLTDNSKHQESEHMEKQYGRRYNIEGRHGYTDGIPEHIAITHSEGRGGVGVSVGGNGAAGIHDQNCMKFIA

Query:  AAVSISVAYLCGLI
        AAVSISVAYLCGLI
Subjt:  AAVSISVAYLCGLI

XP_008446753.1 PREDICTED: transformer-2 protein homolog alpha-like [Cucumis melo]6.83e-4578.07Show/hide
Query:  RRRTETALILILIYSSMLPFSFAFKQLSLTDNSKHQESEHMEKQYGRRYNIEGRHGYTDGIPEH-IAITHSEGRGGVGVSVGG-NGAAGIHDQNCMKFIA
        RRRTE ALILILIYSSM+  SFAFKQL +TD+ KHQESEHMEK +GRRYNIEGRHGYT+GIP H I IT   GRGG G   GG NGA GIHD+N MKFIA
Subjt:  RRRTETALILILIYSSMLPFSFAFKQLSLTDNSKHQESEHMEKQYGRRYNIEGRHGYTDGIPEH-IAITHSEGRGGVGVSVGG-NGAAGIHDQNCMKFIA

Query:  AAVSISVAYLCGLI
        AAVSISVAYLCGLI
Subjt:  AAVSISVAYLCGLI

XP_022987217.1 glycine-rich protein DOT1-like [Cucurbita maxima]6.41e-0748.81Show/hide
Query:  RRRTETALILILIYSSMLPFSFAFKQLSLTDNSKHQESEHMEKQYGRRYNIEGRHGYTDGIPEHIAITHSEGRGGVGVSVGGNG
        RRR E ALIL+L++SSM+  SFAFKQL  TD ++ QESEH EK YG+   +         IP HI I    G G  G   GG+G
Subjt:  RRRTETALILILIYSSMLPFSFAFKQLSLTDNSKHQESEHMEKQYGRRYNIEGRHGYTDGIPEHIAITHSEGRGGVGVSVGGNG

XP_023550250.1 glycine-rich RNA-binding protein 2-like [Cucurbita pepo subsp. pepo]1.08e-0540.44Show/hide
Query:  ALILILIYSSMLPFSFAFKQLSLTDNSKHQESEHMEKQYGRR-----YNIEGRHGYTDGIPEHIAITHSEGRGGVGVSVGGNGA----------------
        ALIL+L+ SSM+  SFAFKQL  TD ++ QESEH EK YG+        I  R G   G     +     G GG G S GG+G                 
Subjt:  ALILILIYSSMLPFSFAFKQLSLTDNSKHQESEHMEKQYGRR-----YNIEGRHGYTDGIPEHIAITHSEGRGGVGVSVGGNGA----------------

Query:  ---AGIHD------QNCMKFIAAAVSISVAYLCGLI
            G H       QN M+FI A VS SVAYL  LI
Subjt:  ---AGIHD------QNCMKFIAAAVSISVAYLCGLI

TrEMBL top hitse value%identityAlignment
A0A0A0KRC8 Uncharacterized protein1.66e-74100Show/hide
Query:  MGRRRTETALILILIYSSMLPFSFAFKQLSLTDNSKHQESEHMEKQYGRRYNIEGRHGYTDGIPEHIAITHSEGRGGVGVSVGGNGAAGIHDQNCMKFIA
        MGRRRTETALILILIYSSMLPFSFAFKQLSLTDNSKHQESEHMEKQYGRRYNIEGRHGYTDGIPEHIAITHSEGRGGVGVSVGGNGAAGIHDQNCMKFIA
Subjt:  MGRRRTETALILILIYSSMLPFSFAFKQLSLTDNSKHQESEHMEKQYGRRYNIEGRHGYTDGIPEHIAITHSEGRGGVGVSVGGNGAAGIHDQNCMKFIA

Query:  AAVSISVAYLCGLI
        AAVSISVAYLCGLI
Subjt:  AAVSISVAYLCGLI

A0A0A0KWM3 Uncharacterized protein1.75e-5584.21Show/hide
Query:  MGRRRTETALILILIYSSMLPFSFAFKQLSLTDNSKHQESEHMEKQYGRRYNIEGRHGYTDGIPEHIAITHSEGRGGVGVSVGGNGAAGIHDQNCMKFIA
        MGRR+   ALILILIYSSMLPFS AFKQL LTDNS HQESEHMEKQYGRRYN+EGRHGYT+GIP HIAIT   GRGG G   G NGAAGIHDQNCMKFIA
Subjt:  MGRRRTETALILILIYSSMLPFSFAFKQLSLTDNSKHQESEHMEKQYGRRYNIEGRHGYTDGIPEHIAITHSEGRGGVGVSVGGNGAAGIHDQNCMKFIA

Query:  AAVSISVAYLCGLI
        AAVSISVAYLCGLI
Subjt:  AAVSISVAYLCGLI

A0A1S3BFU5 transformer-2 protein homolog alpha-like3.31e-4578.07Show/hide
Query:  RRRTETALILILIYSSMLPFSFAFKQLSLTDNSKHQESEHMEKQYGRRYNIEGRHGYTDGIPEH-IAITHSEGRGGVGVSVGG-NGAAGIHDQNCMKFIA
        RRRTE ALILILIYSSM+  SFAFKQL +TD+ KHQESEHMEK +GRRYNIEGRHGYT+GIP H I IT   GRGG G   GG NGA GIHD+N MKFIA
Subjt:  RRRTETALILILIYSSMLPFSFAFKQLSLTDNSKHQESEHMEKQYGRRYNIEGRHGYTDGIPEH-IAITHSEGRGGVGVSVGG-NGAAGIHDQNCMKFIA

Query:  AAVSISVAYLCGLI
        AAVSISVAYLCGLI
Subjt:  AAVSISVAYLCGLI

A0A6J1J9S2 glycine-rich protein DOT1-like3.10e-0748.81Show/hide
Query:  RRRTETALILILIYSSMLPFSFAFKQLSLTDNSKHQESEHMEKQYGRRYNIEGRHGYTDGIPEHIAITHSEGRGGVGVSVGGNG
        RRR E ALIL+L++SSM+  SFAFKQL  TD ++ QESEH EK YG+   +         IP HI I    G G  G   GG+G
Subjt:  RRRTETALILILIYSSMLPFSFAFKQLSLTDNSKHQESEHMEKQYGRRYNIEGRHGYTDGIPEHIAITHSEGRGGVGVSVGGNG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGAAGAAGAAGAACAGAGACTGCATTGATTTTGATTCTGATCTATTCATCTATGCTGCCTTTTTCATTTGCTTTCAAACAACTCTCCCTAACAGACAACAGTAAGCA
CCAAGAAAGTGAGCATATGGAAAAGCAATATGGTAGAAGATACAATATAGAGGGTCGACATGGTTATACAGATGGGATCCCAGAACATATAGCAATTACCCACAGTGAAG
GAAGAGGCGGCGTCGGGGTCAGCGTAGGAGGTAACGGTGCCGCAGGAATTCACGATCAAAACTGCATGAAGTTTATAGCTGCTGCAGTTTCCATATCAGTTGCATATTTG
TGTGGACTTATTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGGAAGAAGAAGAACAGAGACTGCATTGATTTTGATTCTGATCTATTCATCTATGCTGCCTTTTTCATTTGCTTTCAAACAACTCTCCCTAACAGACAACAGTAAGCA
CCAAGAAAGTGAGCATATGGAAAAGCAATATGGTAGAAGATACAATATAGAGGGTCGACATGGTTATACAGATGGGATCCCAGAACATATAGCAATTACCCACAGTGAAG
GAAGAGGCGGCGTCGGGGTCAGCGTAGGAGGTAACGGTGCCGCAGGAATTCACGATCAAAACTGCATGAAGTTTATAGCTGCTGCAGTTTCCATATCAGTTGCATATTTG
TGTGGACTTATTTGA
Protein sequenceShow/hide protein sequence
MGRRRTETALILILIYSSMLPFSFAFKQLSLTDNSKHQESEHMEKQYGRRYNIEGRHGYTDGIPEHIAITHSEGRGGVGVSVGGNGAAGIHDQNCMKFIAAAVSISVAYL
CGLI