; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cucsat.G11048 (gene) of Cucumber (B10) v3 genome

Gene IDCucsat.G11048
OrganismCucumis sativus L. var. sativus cv. B10 (Cucumber (B10) v3)
Descriptionmediator of RNA polymerase II transcription subunit 30
Genome locationctg1740:552891..557245
RNA-Seq ExpressionCucsat.G11048
SyntenyCucsat.G11048
Gene Ontology termsGO:0016592 - mediator complex (cellular component)
InterPro domainsIPR034568 - Mediator of RNA polymerase II transcription subunit 30


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004138044.1 mediator of RNA polymerase II transcription subunit 30 [Cucumis sativus]1.44e-127100Show/hide
Query:  MEEKSTNVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATTATSGLTIASPSGPSSHSANGVVNGDASSESTSHHTDSSGGG
        MEEKSTNVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATTATSGLTIASPSGPSSHSANGVVNGDASSESTSHHTDSSGGG
Subjt:  MEEKSTNVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATTATSGLTIASPSGPSSHSANGVVNGDASSESTSHHTDSSGGG

Query:  GSGSGGALEEARVRYKNSVLALRAILAAIPNSQKAKAYESGTSGHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLIDQLRDLVADVSTWQSPCSV
        GSGSGGALEEARVRYKNSVLALRAILAAIPNSQKAKAYESGTSGHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLIDQLRDLVADVSTWQSPCSV
Subjt:  GSGSGGALEEARVRYKNSVLALRAILAAIPNSQKAKAYESGTSGHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLIDQLRDLVADVSTWQSPCSV
XP_008464424.1 PREDICTED: mediator of RNA polymerase II transcription subunit 30 [Cucumis melo]2.29e-12497.98Show/hide
Query:  MEEKSTNVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATTATSGLTIASPSGPSSHSANGVVNGDASSESTSHHTDSSGGG
        MEEKST VLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATTATSGLTIASP+GPSSHSANGVVNGDASSESTSHHTDSS GG
Subjt:  MEEKSTNVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATTATSGLTIASPSGPSSHSANGVVNGDASSESTSHHTDSSGGG

Query:  GSGSGGALEEARVRYKNSVLALRAILAAIPNSQKAKAYESGTSGHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLIDQLRDLVADVSTWQSPCSV
        GSGSGGALEEARVRYKNSVLALRAILAAIPNSQKAKAYESGTS HASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLIDQLRDLVADVSTWQSPCSV
Subjt:  GSGSGGALEEARVRYKNSVLALRAILAAIPNSQKAKAYESGTSGHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLIDQLRDLVADVSTWQSPCSV
XP_022134927.1 mediator of RNA polymerase II transcription subunit 30 [Momordica charantia]3.07e-11087.37Show/hide
Query:  MEEKSTNVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATTATSGLTIASPSGPSSHSANGVVNGDASSESTSHHTDSSGGG
        ME+K T++LALPQTTQELA+EGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTAT+A   L+IASP+GPS HS NGVVNGDASSEST+HH D+S GG
Subjt:  MEEKSTNVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATTATSGLTIASPSGPSSHSANGVVNGDASSESTSHHTDSSGGG

Query:  GSGSGGALEEARVRYKNSVLALRAILAAIPNSQKAKAYESGTSGHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLIDQLRDLVADVSTWQSPCSV
        G+GSGGALEEARVRY NSVLALRAILAAIP+SQ AKAYESGTSGHASPADQSEIDKLEQHL NLRKELV KNLH+KLLIDQLRDLVAD+STWQSPCSV
Subjt:  GSGSGGALEEARVRYKNSVLALRAILAAIPNSQKAKAYESGTSGHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLIDQLRDLVADVSTWQSPCSV
XP_022921424.1 mediator of RNA polymerase II transcription subunit 30 [Cucurbita moschata]4.24e-12093.94Show/hide
Query:  MEEKSTNVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATTATSGLTIASPSGPSSHSANGVVNGDASSESTSHHTDSSGGG
        MEEK TNVL+LPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATT TSGLTIASP+ PSSHS NGVVNGDASSEST+HHTD+S GG
Subjt:  MEEKSTNVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATTATSGLTIASPSGPSSHSANGVVNGDASSESTSHHTDSSGGG

Query:  GSGSGGALEEARVRYKNSVLALRAILAAIPNSQKAKAYESGTSGHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLIDQLRDLVADVSTWQSPCSV
        GSGSGGALEEARVRYKNSVLALRAILAAIPNSQKAKA+ESGTSGHASPADQSEIDKLEQHLSNLRKEL+VKNLHIKLLIDQLR+LVADVSTWQSPCSV
Subjt:  GSGSGGALEEARVRYKNSVLALRAILAAIPNSQKAKAYESGTSGHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLIDQLRDLVADVSTWQSPCSV
XP_038879540.1 mediator of RNA polymerase II transcription subunit 30 [Benincasa hispida]5.57e-11894.95Show/hide
Query:  MEEKSTNVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATTATSGLTIASPSGPSSHSANGVVNGDASSESTSHHTDSSGGG
        MEEK TNVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSST TTATSGL IASP+GPSSHS NGVVNGDASSESTSHHTDSS GG
Subjt:  MEEKSTNVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATTATSGLTIASPSGPSSHSANGVVNGDASSESTSHHTDSSGGG

Query:  GSGSGGALEEARVRYKNSVLALRAILAAIPNSQKAKAYESGTSGHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLIDQLRDLVADVSTWQSPCSV
        GSGSGGALEEARVRYKNSVLALRAILAAIPNSQKA AYESGTSG  SPADQSEIDKLEQHLS+LRKELVVKNLHIKLLIDQLRDLVADVSTWQSPCSV
Subjt:  GSGSGGALEEARVRYKNSVLALRAILAAIPNSQKAKAYESGTSGHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLIDQLRDLVADVSTWQSPCSV
TrEMBL top hitse value%identityAlignment
A0A0A0LNW4 Uncharacterized protein6.96e-128100Show/hide
Query:  MEEKSTNVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATTATSGLTIASPSGPSSHSANGVVNGDASSESTSHHTDSSGGG
        MEEKSTNVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATTATSGLTIASPSGPSSHSANGVVNGDASSESTSHHTDSSGGG
Subjt:  MEEKSTNVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATTATSGLTIASPSGPSSHSANGVVNGDASSESTSHHTDSSGGG

Query:  GSGSGGALEEARVRYKNSVLALRAILAAIPNSQKAKAYESGTSGHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLIDQLRDLVADVSTWQSPCSV
        GSGSGGALEEARVRYKNSVLALRAILAAIPNSQKAKAYESGTSGHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLIDQLRDLVADVSTWQSPCSV
Subjt:  GSGSGGALEEARVRYKNSVLALRAILAAIPNSQKAKAYESGTSGHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLIDQLRDLVADVSTWQSPCSV
A0A1S3CMZ7 mediator of RNA polymerase II transcription subunit 301.11e-12497.98Show/hide
Query:  MEEKSTNVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATTATSGLTIASPSGPSSHSANGVVNGDASSESTSHHTDSSGGG
        MEEKST VLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATTATSGLTIASP+GPSSHSANGVVNGDASSESTSHHTDSS GG
Subjt:  MEEKSTNVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATTATSGLTIASPSGPSSHSANGVVNGDASSESTSHHTDSSGGG

Query:  GSGSGGALEEARVRYKNSVLALRAILAAIPNSQKAKAYESGTSGHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLIDQLRDLVADVSTWQSPCSV
        GSGSGGALEEARVRYKNSVLALRAILAAIPNSQKAKAYESGTS HASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLIDQLRDLVADVSTWQSPCSV
Subjt:  GSGSGGALEEARVRYKNSVLALRAILAAIPNSQKAKAYESGTSGHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLIDQLRDLVADVSTWQSPCSV
A0A5A7USU3 Mediator of RNA polymerase II transcription subunit 301.11e-12497.98Show/hide
Query:  MEEKSTNVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATTATSGLTIASPSGPSSHSANGVVNGDASSESTSHHTDSSGGG
        MEEKST VLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATTATSGLTIASP+GPSSHSANGVVNGDASSESTSHHTDSS GG
Subjt:  MEEKSTNVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATTATSGLTIASPSGPSSHSANGVVNGDASSESTSHHTDSSGGG

Query:  GSGSGGALEEARVRYKNSVLALRAILAAIPNSQKAKAYESGTSGHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLIDQLRDLVADVSTWQSPCSV
        GSGSGGALEEARVRYKNSVLALRAILAAIPNSQKAKAYESGTS HASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLIDQLRDLVADVSTWQSPCSV
Subjt:  GSGSGGALEEARVRYKNSVLALRAILAAIPNSQKAKAYESGTSGHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLIDQLRDLVADVSTWQSPCSV
A0A6J1E0F5 mediator of RNA polymerase II transcription subunit 302.05e-12093.94Show/hide
Query:  MEEKSTNVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATTATSGLTIASPSGPSSHSANGVVNGDASSESTSHHTDSSGGG
        MEEK TNVL+LPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATT TSGLTIASP+ PSSHS NGVVNGDASSEST+HHTD+S GG
Subjt:  MEEKSTNVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATTATSGLTIASPSGPSSHSANGVVNGDASSESTSHHTDSSGGG

Query:  GSGSGGALEEARVRYKNSVLALRAILAAIPNSQKAKAYESGTSGHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLIDQLRDLVADVSTWQSPCSV
        GSGSGGALEEARVRYKNSVLALRAILAAIPNSQKAKA+ESGTSGHASPADQSEIDKLEQHLSNLRKEL+VKNLHIKLLIDQLR+LVADVSTWQSPCSV
Subjt:  GSGSGGALEEARVRYKNSVLALRAILAAIPNSQKAKAYESGTSGHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLIDQLRDLVADVSTWQSPCSV
A0A6J1JFZ2 mediator of RNA polymerase II transcription subunit 302.05e-12093.94Show/hide
Query:  MEEKSTNVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATTATSGLTIASPSGPSSHSANGVVNGDASSESTSHHTDSSGGG
        MEEK TNVL+LPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATT TSGLTIASP+ PSSHS NGVVNGDASSEST+HHTD+S GG
Subjt:  MEEKSTNVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATTATSGLTIASPSGPSSHSANGVVNGDASSESTSHHTDSSGGG

Query:  GSGSGGALEEARVRYKNSVLALRAILAAIPNSQKAKAYESGTSGHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLIDQLRDLVADVSTWQSPCSV
        GSGSGGALEEARVRYKNSVLALRAILAAIPNSQKAKA+ESGTSGHASPADQSEIDKLEQHLSNLRKEL+VKNLHIKLLIDQLR+LVADVSTWQSPCSV
Subjt:  GSGSGGALEEARVRYKNSVLALRAILAAIPNSQKAKAYESGTSGHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLIDQLRDLVADVSTWQSPCSV
SwissProt top hitse value%identityAlignment
Q9FMV4 Mediator of RNA polymerase II transcription subunit 305.8e-4555.85Show/hide
Query:  TTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATTATSGLTIASPSGPSSHSANGVVNGDASS-ESTSHHTDSSGGGGSGSGG--ALEE
        TTQELAMEG K LEETIE+AFQI+ +MNDELCNP+LWST+++ ++ AT+          +  + + +V+ DA++ + TSHH++S+GGGG G  G   L+E
Subjt:  TTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATTATSGLTIASPSGPSSHSANGVVNGDASS-ESTSHHTDSSGGGGSGSGG--ALEE

Query:  ARVRYKNSVLALRAILAAIPNSQKAKAYESGTSGHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLIDQLRDLVADVSTWQSPCSV
        A +RYKNSV +LRA+LAAIPNSQKAKA E   +G  SP  + EI+KLE+   +LR E+  KN+H+K LID+LR+L+AD+STWQSPCSV
Subjt:  ARVRYKNSVLALRAILAAIPNSQKAKAYESGTSGHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLIDQLRDLVADVSTWQSPCSV
Arabidopsis top hitse value%identityAlignment
AT5G63480.1 unknown protein4.1e-4655.85Show/hide
Query:  TTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATTATSGLTIASPSGPSSHSANGVVNGDASS-ESTSHHTDSSGGGGSGSGG--ALEE
        TTQELAMEG K LEETIE+AFQI+ +MNDELCNP+LWST+++ ++ AT+          +  + + +V+ DA++ + TSHH++S+GGGG G  G   L+E
Subjt:  TTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATTATSGLTIASPSGPSSHSANGVVNGDASS-ESTSHHTDSSGGGGSGSGG--ALEE

Query:  ARVRYKNSVLALRAILAAIPNSQKAKAYESGTSGHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLIDQLRDLVADVSTWQSPCSV
        A +RYKNSV +LRA+LAAIPNSQKAKA E   +G  SP  + EI+KLE+   +LR E+  KN+H+K LID+LR+L+AD+STWQSPCSV
Subjt:  ARVRYKNSVLALRAILAAIPNSQKAKAYESGTSGHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLIDQLRDLVADVSTWQSPCSV

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAGAGAAATCGACTAATGTTTTGGCTCTTCCCCAGACAACTCAAGAGCTTGCAATGGAGGGCATCAAGCATCTTGAAGAAACCATAGAATCCGCTTTCCAGATTCT
CTACTCCATGAATGACGAGCTCTGTAATCCCACATTATGGTCCACCACTTCTTCAACGGCAACCACGGCTACTTCTGGTTTAACAATTGCCAGCCCAAGTGGTCCATCTT
CGCATTCTGCTAATGGAGTTGTAAATGGTGATGCTAGTTCCGAAAGCACTAGCCATCACACCGATTCCAGCGGCGGCGGAGGCAGTGGTAGTGGGGGAGCCCTTGAGGAG
GCACGAGTTCGCTACAAGAACTCAGTTCTTGCACTTCGTGCTATTCTTGCTGCAATCCCCAATTCTCAGAAGGCAAAAGCATACGAATCGGGTACGAGTGGTCATGCATC
GCCTGCAGACCAATCTGAAATTGATAAGTTGGAACAACACCTCTCTAATCTCAGAAAGGAACTTGTGGTTAAAAATTTGCACATCAAGCTTCTGATAGATCAACTACGAG
ATCTTGTTGCTGATGTATCTACATGGCAAAGTCCTTGTTCTGTGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGAAGAGAAATCGACTAATGTTTTGGCTCTTCCCCAGACAACTCAAGAGCTTGCAATGGAGGGCATCAAGCATCTTGAAGAAACCATAGAATCCGCTTTCCAGATTCT
CTACTCCATGAATGACGAGCTCTGTAATCCCACATTATGGTCCACCACTTCTTCAACGGCAACCACGGCTACTTCTGGTTTAACAATTGCCAGCCCAAGTGGTCCATCTT
CGCATTCTGCTAATGGAGTTGTAAATGGTGATGCTAGTTCCGAAAGCACTAGCCATCACACCGATTCCAGCGGCGGCGGAGGCAGTGGTAGTGGGGGAGCCCTTGAGGAG
GCACGAGTTCGCTACAAGAACTCAGTTCTTGCACTTCGTGCTATTCTTGCTGCAATCCCCAATTCTCAGAAGGCAAAAGCATACGAATCGGGTACGAGTGGTCATGCATC
GCCTGCAGACCAATCTGAAATTGATAAGTTGGAACAACACCTCTCTAATCTCAGAAAGGAACTTGTGGTTAAAAATTTGCACATCAAGCTTCTGATAGATCAACTACGAG
ATCTTGTTGCTGATGTATCTACATGGCAAAGTCCTTGTTCTGTGTGA
Protein sequenceShow/hide protein sequence
MEEKSTNVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATTATSGLTIASPSGPSSHSANGVVNGDASSESTSHHTDSSGGGGSGSGGALEE
ARVRYKNSVLALRAILAAIPNSQKAKAYESGTSGHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLIDQLRDLVADVSTWQSPCSV