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Cucsat.G11193 (gene) of Cucumber (B10) v3 genome

Gene IDCucsat.G11193
OrganismCucumis sativus L. var. sativus cv. B10 (Cucumber (B10) v3)
DescriptionIntegrase catalytic domain-containing protein
Genome locationctg1780:275204..276676
RNA-Seq ExpressionCucsat.G11193
SyntenyCucsat.G11193
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR036875 - Zinc finger, CCHC-type superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022148562.1 uncharacterized protein LOC111017196 [Momordica charantia]6.71e-3844.13Show/hide
Query:  SCGKCSCGGVKNLQTHFQTEHVMSFLMGLNDFFSQIRTQLLLMEQEPTLQKAFSLVVQEVKQH-------ASTSQVSTPNFPINSEN-SAMLVKNISQNP
        SCG+C+CGGVK+L  +FQTE+VM FLMGLND FSQIR  LLLM   PT+  AF L+ QEV+Q        A++S  ST      ++N ++  + N S + 
Subjt:  SCGKCSCGGVKNLQTHFQTEHVMSFLMGLNDFFSQIRTQLLLMEQEPTLQKAFSLVVQEVKQH-------ASTSQVSTPNFPINSEN-SAMLVKNISQNP

Query:  PQSRLNPSKKKDRTICSHCNIPGHTAEKCYRLHGFPPGYKTNRNSKTEP----------TTTTTPAHTDSLSNMNAEQC
         +S  N  K+K++++C+HC +  HT ++CY+LHG+PPGY+ +    T P          T+  T A  DSLS++NA+QC
Subjt:  PQSRLNPSKKKDRTICSHCNIPGHTAEKCYRLHGFPPGYKTNRNSKTEP----------TTTTTPAHTDSLSNMNAEQC

XP_031737360.1 uncharacterized protein LOC116402241 [Cucumis sativus]7.75e-7788.49Show/hide
Query:  MSFLMGLNDFFSQIRTQLLLMEQEPTLQKAFSLVVQEVKQHASTSQVSTPNFPINSENSAMLVKNISQNPPQSRLNPSKKKDRTICSHCNIPGHTAEKCY
        MSFLMGLND FSQIRTQLLLME EPTLQK FSLVVQEV+Q  STSQVSTPN PINSE SAMLVKNISQNPPQSR NPSKKKDR +CSH NIP HTAEKCY
Subjt:  MSFLMGLNDFFSQIRTQLLLMEQEPTLQKAFSLVVQEVKQHASTSQVSTPNFPINSENSAMLVKNISQNPPQSRLNPSKKKDRTICSHCNIPGHTAEKCY

Query:  RLHGFPPGYKTNRNSKTEPTTTTTPAHTDSLSNMNAEQC
         LHGFPPGYKTNRNSKTEPTTTT PAHTDSLSNMN EQC
Subjt:  RLHGFPPGYKTNRNSKTEPTTTTTPAHTDSLSNMNAEQC

XP_038896588.1 uncharacterized protein LOC120084843 [Benincasa hispida]8.30e-4754.49Show/hide
Query:  SCGKCSCGGVKNLQTHFQTEHVMSFLMGLNDFFSQIRTQLLLMEQEPTLQKAFSLVVQEVKQHASTSQVSTPNFPINSENSAMLVKNISQN-----PPQS
        SCGKC+CGGVKNLQT+FQTE+VM+FLMGLND  + IR+QLLLME EP++ +AFSLV QE+ Q A +S  S  N   +S  +A+LVKN S       P  S
Subjt:  SCGKCSCGGVKNLQTHFQTEHVMSFLMGLNDFFSQIRTQLLLMEQEPTLQKAFSLVVQEVKQHASTSQVSTPNFPINSENSAMLVKNISQN-----PPQS

Query:  R-LNPSKKKDRTICSHCNIPGHTAEKCYRLHGFPPGYKTNRNSKTEPTTTTTPAHTDSLSNMNAEQC
        R  N +KKKD+ IC+HCNI GHT + CY+LHG+PPG+K  +     P  +    H+DSLS++ +EQC
Subjt:  R-LNPSKKKDRTICSHCNIPGHTAEKCYRLHGFPPGYKTNRNSKTEPTTTTTPAHTDSLSNMNAEQC

XP_038904477.1 uncharacterized protein LOC120090845 [Benincasa hispida]3.20e-4652.69Show/hide
Query:  SCGKCSCGGVKNLQTHFQTEHVMSFLMGLNDFFSQIRTQLLLMEQEPTLQKAFSLVVQEVKQHASTSQVSTPNFPINSENSAMLVKNISQNPPQS-----
        SCGKC+CGGVKNLQT+FQTE+V++FLMGLND  + IR+QLLLME +PT+ +AFSLV QE+ Q A +S  S  N   +S  +A+LVKN S    Q+     
Subjt:  SCGKCSCGGVKNLQTHFQTEHVMSFLMGLNDFFSQIRTQLLLMEQEPTLQKAFSLVVQEVKQHASTSQVSTPNFPINSENSAMLVKNISQNPPQS-----

Query:  -RLNPSKKKDRTICSHCNIPGHTAEKCYRLHGFPPGYKTNRNSKTEPTTTTTPAHTDSLSNMNAEQC
           N +KKKDR IC+HC+I GHT ++CY+LHG+PPG+K  +     P  +    H+DSLS++ +EQC
Subjt:  -RLNPSKKKDRTICSHCNIPGHTAEKCYRLHGFPPGYKTNRNSKTEPTTTTTPAHTDSLSNMNAEQC

XP_038905564.1 uncharacterized protein LOC120091546 [Benincasa hispida]8.32e-4250.89Show/hide
Query:  SCGKCSCGGVKNLQTHFQTEHVMSFLMGLNDFFSQIRTQLLLMEQEPTLQKAFSLVVQEVKQHASTSQVSTPNFPINSENSAMLVKNISQNPP--QSRL-
        SCG+C+C GVK+L T+ QTEHVM+FLMGLN+ FSQI TQLLLME EP++ KAFS V+QEV+Q    S  +  +   +++N+A+LVKN S N    QS L 
Subjt:  SCGKCSCGGVKNLQTHFQTEHVMSFLMGLNDFFSQIRTQLLLMEQEPTLQKAFSLVVQEVKQHASTSQVSTPNFPINSENSAMLVKNISQNPP--QSRL-

Query:  NPSKKKDRTICSHCNIPGHTAEKCYRLHGFPPGYKTNR---NSKTEP---TTTTTPAHTDSLSNMNAEQ
        N +KKKDR   +HCNIPGHT ++CY++H +PP Y++N+   +SK+E    T+T+  + + S  N +A+Q
Subjt:  NPSKKKDRTICSHCNIPGHTAEKCYRLHGFPPGYKTNR---NSKTEP---TTTTTPAHTDSLSNMNAEQ

TrEMBL top hitse value%identityAlignment
A0A5J4ZHF9 Uncharacterized protein1.12e-3246.9Show/hide
Query:  SCGKCSCGGVKNLQTHFQTEHVMSFLMGLNDFFSQIRTQLLLMEQEPTLQKAFSLVVQEVKQHA------STSQVSTPNFPINSENSAMLVKNISQNPPQ
        SCGKCSCGGVKNL  H Q E++MSFLM L+D FSQ+R QLLLM+  P + + FSL+VQE +Q        S++  ST  F + ++      K+       
Subjt:  SCGKCSCGGVKNLQTHFQTEHVMSFLMGLNDFFSQIRTQLLLMEQEPTLQKAFSLVVQEVKQHA------STSQVSTPNFPINSENSAMLVKNISQNPPQ

Query:  SRLNPSK--KKDRTICSHCNIPGHTAEKCYRLHGFPPGYKTNRNS
        S  + SK  K+DR  C+HC I GHT ++CY++HG+PPGYK   N+
Subjt:  SRLNPSK--KKDRTICSHCNIPGHTAEKCYRLHGFPPGYKTNRNS

A0A5J5B2C5 Uncharacterized protein1.91e-3247.59Show/hide
Query:  SCGKCSCGGVKNLQTHFQTEHVMSFLMGLNDFFSQIRTQLLLMEQEPTLQKAFSLVVQEVKQHA------STSQVSTPNFPINSENSAMLVKNISQNPPQ
        SCGKC CGGVKNL  + QTE++MSFLMGL+D FSQ+  QLLLM+  P + + FSL+VQE +Q        S++   T  F + ++  A    + SQN   
Subjt:  SCGKCSCGGVKNLQTHFQTEHVMSFLMGLNDFFSQIRTQLLLMEQEPTLQKAFSLVVQEVKQHA------STSQVSTPNFPINSENSAMLVKNISQNPPQ

Query:  SRLNPSK--KKDRTICSHCNIPGHTAEKCYRLHGFPPGYKTNRNS
        S  + SK  K+DR  C+HC I GHT ++CY++HG+PPGYK   N+
Subjt:  SRLNPSK--KKDRTICSHCNIPGHTAEKCYRLHGFPPGYKTNRNS

A0A5J5BKC2 Uncharacterized protein2.88e-3448.98Show/hide
Query:  SCGKCSCGGVKNLQTHFQTEHVMSFLMGLNDFFSQIRTQLLLMEQEPTLQKAFSLVVQEVKQHASTSQVSTPNFPINSENSAMLVKNI--------SQNP
        SCGKCSCGGVKNL  H Q E++MSFLMGL+D FSQ+R QLLLM+  P + + FSL+VQE +Q  + S   + N   ++   A  VK          SQN 
Subjt:  SCGKCSCGGVKNLQTHFQTEHVMSFLMGLNDFFSQIRTQLLLMEQEPTLQKAFSLVVQEVKQHASTSQVSTPNFPINSENSAMLVKNI--------SQNP

Query:  PQSRLNPSK--KKDRTICSHCNIPGHTAEKCYRLHGFPPGYKTNRNS
          S  + SK  K+DR  C HC I GHT ++CY++HG+PPGYK   N+
Subjt:  PQSRLNPSK--KKDRTICSHCNIPGHTAEKCYRLHGFPPGYKTNRNS

A0A6J1D5E3 uncharacterized protein LOC1110171963.25e-3844.13Show/hide
Query:  SCGKCSCGGVKNLQTHFQTEHVMSFLMGLNDFFSQIRTQLLLMEQEPTLQKAFSLVVQEVKQH-------ASTSQVSTPNFPINSEN-SAMLVKNISQNP
        SCG+C+CGGVK+L  +FQTE+VM FLMGLND FSQIR  LLLM   PT+  AF L+ QEV+Q        A++S  ST      ++N ++  + N S + 
Subjt:  SCGKCSCGGVKNLQTHFQTEHVMSFLMGLNDFFSQIRTQLLLMEQEPTLQKAFSLVVQEVKQH-------ASTSQVSTPNFPINSEN-SAMLVKNISQNP

Query:  PQSRLNPSKKKDRTICSHCNIPGHTAEKCYRLHGFPPGYKTNRNSKTEP----------TTTTTPAHTDSLSNMNAEQC
         +S  N  K+K++++C+HC +  HT ++CY+LHG+PPGY+ +    T P          T+  T A  DSLS++NA+QC
Subjt:  PQSRLNPSKKKDRTICSHCNIPGHTAEKCYRLHGFPPGYKTNRNSKTEP----------TTTTTPAHTDSLSNMNAEQC

A0A6J1DNP7 uncharacterized protein LOC1110220658.47e-3444.2Show/hide
Query:  SCGKCSCGGVKNLQTHFQTEHVMSFLMGLNDFFSQIRTQLLLMEQEPTLQKAFSLVVQEVKQHA-STSQVSTPNFPINSENSAMLVKNISQNPPQSRLNP
        SCG+CS GGVK+++ H+Q E+VM+FLMGLN  FSQIR QLLLME  PT+ +AF+LV QE++Q + S   V++P         A  V+  S N   SRLN 
Subjt:  SCGKCSCGGVKNLQTHFQTEHVMSFLMGLNDFFSQIRTQLLLMEQEPTLQKAFSLVVQEVKQHA-STSQVSTPNFPINSENSAMLVKNISQNPPQSRLNP

Query:  S-----KKKDRTICSHCNIPGHTAEKCYRLHGFPPGYKTNRNSKTEPTTTT-------------TPAH-TDSLSNMNAEQC
        S     K+KD+++C+HC I GHT +KCY+LH +PPGY+++ +  T    T+             TP+  ++SL+ + A+QC
Subjt:  S-----KKKDRTICSHCNIPGHTAEKCYRLHGFPPGYKTNRNSKTEPTTTT-------------TPAH-TDSLSNMNAEQC

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TCCTGTGGAAAGTGCTCATGTGGAGGAGTAAAGAATCTTCAAACCCATTTTCAAACAGAGCATGTAATGTCTTTTCTGATGGGCCTCAATGATTTTTTTTCACAAATTCG
TACACAACTACTATTAATGGAACAAGAACCAACATTACAGAAAGCCTTTTCGCTTGTAGTGCAAGAAGTTAAGCAACATGCATCAACCTCTCAAGTAAGTACACCTAATT
TTCCCATAAATTCTGAAAACTCAGCCATGTTAGTGAAAAATATTTCACAAAATCCACCACAATCCCGCTTAAATCCATCAAAGAAGAAAGATCGCACTATTTGTTCCCAC
TGCAATATCCCCGGTCACACGGCTGAAAAATGCTATCGCCTCCATGGTTTTCCTCCTGGATACAAAACCAACCGCAACAGTAAGACTGAACCCACTACTACCACTACCCC
TGCCCACACTGATTCTCTCTCAAACATGAATGCTGAGCAATGCTAG
mRNA sequenceShow/hide mRNA sequence
TCCTGTGGAAAGTGCTCATGTGGAGGAGTAAAGAATCTTCAAACCCATTTTCAAACAGAGCATGTAATGTCTTTTCTGATGGGCCTCAATGATTTTTTTTCACAAATTCG
TACACAACTACTATTAATGGAACAAGAACCAACATTACAGAAAGCCTTTTCGCTTGTAGTGCAAGAAGTTAAGCAACATGCATCAACCTCTCAAGTAAGTACACCTAATT
TTCCCATAAATTCTGAAAACTCAGCCATGTTAGTGAAAAATATTTCACAAAATCCACCACAATCCCGCTTAAATCCATCAAAGAAGAAAGATCGCACTATTTGTTCCCAC
TGCAATATCCCCGGTCACACGGCTGAAAAATGCTATCGCCTCCATGGTTTTCCTCCTGGATACAAAACCAACCGCAACAGTAAGACTGAACCCACTACTACCACTACCCC
TGCCCACACTGATTCTCTCTCAAACATGAATGCTGAGCAATGCTAG
Protein sequenceShow/hide protein sequence
SCGKCSCGGVKNLQTHFQTEHVMSFLMGLNDFFSQIRTQLLLMEQEPTLQKAFSLVVQEVKQHASTSQVSTPNFPINSENSAMLVKNISQNPPQSRLNPSKKKDRTICSH
CNIPGHTAEKCYRLHGFPPGYKTNRNSKTEPTTTTTPAHTDSLSNMNAEQC