; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cucsat.G11484 (gene) of Cucumber (B10) v3 genome

Gene IDCucsat.G11484
OrganismCucumis sativus L. var. sativus cv. B10 (Cucumber (B10) v3)
DescriptionRetrotran_gag_3 domain-containing protein
Genome locationctg1808:151473..153150
RNA-Seq ExpressionCucsat.G11484
SyntenyCucsat.G11484
Gene Ontology termsNA
InterPro domainsIPR029472 - Retrotransposon Copia-like, N-terminal


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_011650144.1 uncharacterized protein LOC105434731 [Cucumis sativus]2.93e-3066.22Show/hide
Query:  NQGYLNPYFLHHNDNTSLVLVTKQLTEENYISWSRAMTIGLSVKNKIGFVDETIAKPTGDLLPAWIKNNNIVIS
        NQGY NP+ +HHNDN+SL+LVT+ LTEENY+SWSR M IGL +KNK+GF D ++++P  D LP+WI+NNNIVIS
Subjt:  NQGYLNPYFLHHNDNTSLVLVTKQLTEENYISWSRAMTIGLSVKNKIGFVDETIAKPTGDLLPAWIKNNNIVIS

XP_022154608.1 uncharacterized protein LOC111021831 [Momordica charantia]1.06e-2668.57Show/hide
Query:  LNPYFLHHNDNTSLVLVTKQLTEENYISWSRAMTIGLSVKNKIGFVDETIAKPTGDLLPAWIKNNNIVIS
        LNPY+LHH DNT LVLVT+ LTEENY SWSR+M I LS+KNK+GF+D +I++P G+LLPAWI NN++VI+
Subjt:  LNPYFLHHNDNTSLVLVTKQLTEENYISWSRAMTIGLSVKNKIGFVDETIAKPTGDLLPAWIKNNNIVIS

XP_031736904.1 uncharacterized protein LOC105434586 isoform X1 [Cucumis sativus]1.22e-5484.26Show/hide
Query:  MTTPTVNTSQNLPETQENHNSSQSDTSAQTSFNQNQGYLNPYFLHHNDNTSLVLVTKQLTEENYISWSRAMTIGLSVKNKIGFVDETIAKPTGDLLPAWI
        MTTPT+N S   P+ QEN NS+QSDTSAQTSF+QNQGYLNPYFLHHNDNT+LVLVT+QLTEENY+SWSRAMTIGLSVKNKIGFVD TIA+PTGDLLP WI
Subjt:  MTTPTVNTSQNLPETQENHNSSQSDTSAQTSFNQNQGYLNPYFLHHNDNTSLVLVTKQLTEENYISWSRAMTIGLSVKNKIGFVDETIAKPTGDLLPAWI

Query:  KNNNIVIS
        +NNNIVIS
Subjt:  KNNNIVIS

XP_031736905.1 uncharacterized protein LOC105434586 isoform X2 [Cucumis sativus]4.48e-5584.26Show/hide
Query:  MTTPTVNTSQNLPETQENHNSSQSDTSAQTSFNQNQGYLNPYFLHHNDNTSLVLVTKQLTEENYISWSRAMTIGLSVKNKIGFVDETIAKPTGDLLPAWI
        MTTPT+N S   P+ QEN NS+QSDTSAQTSF+QNQGYLNPYFLHHNDNT+LVLVT+QLTEENY+SWSRAMTIGLSVKNKIGFVD TIA+PTGDLLP WI
Subjt:  MTTPTVNTSQNLPETQENHNSSQSDTSAQTSFNQNQGYLNPYFLHHNDNTSLVLVTKQLTEENYISWSRAMTIGLSVKNKIGFVDETIAKPTGDLLPAWI

Query:  KNNNIVIS
        +NNNIVIS
Subjt:  KNNNIVIS

XP_031736906.1 uncharacterized protein LOC105434586 isoform X3 [Cucumis sativus]4.36e-5584.26Show/hide
Query:  MTTPTVNTSQNLPETQENHNSSQSDTSAQTSFNQNQGYLNPYFLHHNDNTSLVLVTKQLTEENYISWSRAMTIGLSVKNKIGFVDETIAKPTGDLLPAWI
        MTTPT+N S   P+ QEN NS+QSDTSAQTSF+QNQGYLNPYFLHHNDNT+LVLVT+QLTEENY+SWSRAMTIGLSVKNKIGFVD TIA+PTGDLLP WI
Subjt:  MTTPTVNTSQNLPETQENHNSSQSDTSAQTSFNQNQGYLNPYFLHHNDNTSLVLVTKQLTEENYISWSRAMTIGLSVKNKIGFVDETIAKPTGDLLPAWI

Query:  KNNNIVIS
        +NNNIVIS
Subjt:  KNNNIVIS

TrEMBL top hitse value%identityAlignment
A0A5D3CMC2 Retrotran_gag_3 domain-containing protein1.55e-2562.67Show/hide
Query:  AQTSFNQNQGYLNPYFLHHNDNTSLVLVTKQLTEENYISWSRAMTIGLSVKNKIGFVDETIAKPTGDLLPAWIKN
        +Q S N ++ YLNPYFLHHNDNTSLVLV + L EENY+SWSRAM   LS+KNKI  +D T+ +P  D+L AWI+N
Subjt:  AQTSFNQNQGYLNPYFLHHNDNTSLVLVTKQLTEENYISWSRAMTIGLSVKNKIGFVDETIAKPTGDLLPAWIKN

A0A6J1CMF8 uncharacterized protein LOC1110124687.50e-2258.9Show/hide
Query:  QGYLNPYFLHHNDNTSLVLVTKQLTEENYISWSRAMTIGLSVKNKIGFVDETIAKPTGDLLPAWIKNNNIVIS
        + Y NPY+LHH+DNTSLVLV+  L E NY SWSR+M I L+VKNKIGFVD +I++P+G  + +W   NN+VI+
Subjt:  QGYLNPYFLHHNDNTSLVLVTKQLTEENYISWSRAMTIGLSVKNKIGFVDETIAKPTGDLLPAWIKNNNIVIS

A0A6J1DIP8 uncharacterized protein LOC1110203997.51e-2570.42Show/hide
Query:  YLNPYFLHHNDNTSLVLVTKQLTEENYISWSRAMTIGLSVKNKIGFVDETIAKPTGDLLPAWIKNNNIVIS
        Y NPYFLHH+DNTSLVLV+  LT ENY SWSR+M I L+VKNK+GFVD +I +PTGDLL +WI  NN+VIS
Subjt:  YLNPYFLHHNDNTSLVLVTKQLTEENYISWSRAMTIGLSVKNKIGFVDETIAKPTGDLLPAWIKNNNIVIS

A0A6J1DKR8 uncharacterized protein LOC1110218315.11e-2768.57Show/hide
Query:  LNPYFLHHNDNTSLVLVTKQLTEENYISWSRAMTIGLSVKNKIGFVDETIAKPTGDLLPAWIKNNNIVIS
        LNPY+LHH DNT LVLVT+ LTEENY SWSR+M I LS+KNK+GF+D +I++P G+LLPAWI NN++VI+
Subjt:  LNPYFLHHNDNTSLVLVTKQLTEENYISWSRAMTIGLSVKNKIGFVDETIAKPTGDLLPAWIKNNNIVIS

A0A6J1DW89 uncharacterized protein LOC1110237021.06e-2556.7Show/hide
Query:  LPETQENHNSSQSDTSAQTSFNQNQGYLNPYFLHHNDNTSLVLVTKQLTEENYISWSRAMTIGLSVKNKIGFVDETIAKPTGDLLPAWIKNNNIVIS
        LP T  +  SS S  S+ T  + +   LNPY+LHH DNT LV V + LTE+NY SWSR+M I LSVKNK+ F+D  I +P+GDLLPAWI NN+IVI+
Subjt:  LPETQENHNSSQSDTSAQTSFNQNQGYLNPYFLHHNDNTSLVLVTKQLTEENYISWSRAMTIGLSVKNKIGFVDETIAKPTGDLLPAWIKNNNIVIS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACAACTCCAACAGTCAATACTTCACAGAACCTACCGGAAACTCAAGAAAATCACAATTCCAGTCAGTCTGATACCTCTGCCCAAACTTCTTTCAATCAGAATCAAGG
ATATCTAAATCCTTACTTTCTTCATCACAATGATAATACAAGTTTGGTGCTGGTTACAAAACAATTGACAGAAGAAAATTATATCTCTTGGAGCCGAGCAATGACCATTG
GTCTCTCAGTGAAGAACAAGATTGGATTTGTTGACGAAACTATTGCCAAGCCAACCGGTGATCTTCTTCCAGCTTGGATCAAAAATAATAACATCGTTATCTCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGACAACTCCAACAGTCAATACTTCACAGAACCTACCGGAAACTCAAGAAAATCACAATTCCAGTCAGTCTGATACCTCTGCCCAAACTTCTTTCAATCAGAATCAAGG
ATATCTAAATCCTTACTTTCTTCATCACAATGATAATACAAGTTTGGTGCTGGTTACAAAACAATTGACAGAAGAAAATTATATCTCTTGGAGCCGAGCAATGACCATTG
GTCTCTCAGTGAAGAACAAGATTGGATTTGTTGACGAAACTATTGCCAAGCCAACCGGTGATCTTCTTCCAGCTTGGATCAAAAATAATAACATCGTTATCTCTTGA
Protein sequenceShow/hide protein sequence
MTTPTVNTSQNLPETQENHNSSQSDTSAQTSFNQNQGYLNPYFLHHNDNTSLVLVTKQLTEENYISWSRAMTIGLSVKNKIGFVDETIAKPTGDLLPAWIKNNNIVIS