CuGenDBv2

Gene ID	Cucsat.G115
Organism	Cucumis sativus L. var. sativus cv. B10 (Cucumber (B10) v3)
Description	tRNA_edit domain-containing protein
Genome location	ctg1:2176239..2178789
RNA-Seq Expression	Cucsat.G115
Synteny	Cucsat.G115
Gene Ontology terms	GO:0106074 - aminoacyl-tRNA metabolism involved in translational fidelity (biological process) GO:0002161 - aminoacyl-tRNA editing activity (molecular function) GO:0004812 - aminoacyl-tRNA ligase activity (molecular function)
InterPro domains	IPR007214 - YbaK/aminoacyl-tRNA synthetase-associated domain IPR036754 - YbaK/aminoacyl-tRNA synthetase-associated domain superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

XP_004147201.1 uncharacterized protein LOC101218396 [Cucumis sativus]

2.12e-160

99.55

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Query:  MGTESEAMAEQNSMEAQNLDLKCLPNLDSPPSSVPSDGADDDDTVARLSAILTTNAVNDFSFKRVPSDYYDWPLEARRDVLDAASIDHLCKSIVLVNTQA
        MGTESEAMAEQNSMEAQNLDLKCLPNLDSPPSSVPSDGADDDDTVARLSAILTTNAVNDFSFKRVPSDYYDWPLEARRDVLDAASIDHLCKSIVLVNTQA
Subjt:  MGTESEAMAEQNSMEAQNLDLKCLPNLDSPPSSVPSDGADDDDTVARLSAILTTNAVNDFSFKRVPSDYYDWPLEARRDVLDAASIDHLCKSIVLVNTQA

Query:  PSHIVDCSDRNNSKYYIVVVQYTAKFNAETIRSFLYSLNDGKIAKKKFNLRLAPEEISAKLTGYEHNGVTCIGMKTDIPVILDEAIVKLNPDYFWLGGGE
        PSHIVDCSDRNNSKYYIVVVQYTAKFNAETIRSFLYSLNDGKIAKKKFNLRLAPEEISAKLTGYEHNGVTCIGMKTDIPVILDEAIVKLNPDYFWLGGGE
Subjt:  PSHIVDCSDRNNSKYYIVVVQYTAKFNAETIRSFLYSLNDGKIAKKKFNLRLAPEEISAKLTGYEHNGVTCIGMKTDIPVILDEAIVKLNPDYFWLGGGE

Query:  TDLKLGIRTSEFVNYVKPFIIKCS
        TDLKLGIRTSEF+NYVKPFIIKCS
Subjt:  TDLKLGIRTSEFVNYVKPFIIKCS

XP_008448863.1 PREDICTED: uncharacterized protein LOC103490895 [Cucumis melo]

2.39e-143

87.03

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Query:  MGTESEAMAEQNSMEA---------------QNLDLKCLPNLDSPPSSVPSDGADDDDTVARLSAILTTNAVNDFSFKRVPSDYYDWPLEARRDVLDAAS
        MG+ESEAMAEQNSMEA                NL+LK LPNLDSPPSSVPSDGADDD TVARLSAIL TNAVNDFSFKRVPSDYYDW LEARRDVLDAAS
Subjt:  MGTESEAMAEQNSMEA---------------QNLDLKCLPNLDSPPSSVPSDGADDDDTVARLSAILTTNAVNDFSFKRVPSDYYDWPLEARRDVLDAAS

Query:  IDHLCKSIVLVNTQAPSHIVDCSDRNNSKYYIVVVQYTAKFNAETIRSFLYSLNDGKIAKKKFNLRLAPEEISAKLTGYEHNGVTCIGMKTDIPVILDEA
        IDHLCKSIVLVNTQAPSH+VDCSDRNNSKYYIVVVQYTAKFNAE ++SFLYSLNDGKIAKKKFNLRLAPEE S KLTGYEHNGVTCIGMKTDIPVILDEA
Subjt:  IDHLCKSIVLVNTQAPSHIVDCSDRNNSKYYIVVVQYTAKFNAETIRSFLYSLNDGKIAKKKFNLRLAPEEISAKLTGYEHNGVTCIGMKTDIPVILDEA

Query:  IVKLNPDYFWLGGGETDLKLGIRTSEFVNYVKPFIIKCS
        IVKLNPDYFWLGGGE DLKLGIRTSEF+N+VKPFIIKCS
Subjt:  IVKLNPDYFWLGGGETDLKLGIRTSEFVNYVKPFIIKCS

XP_022951583.1 uncharacterized protein LOC111454353 [Cucurbita moschata]

8.76e-129

79.08

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Query:  MGTESEAMAEQNSMEA---------------QNLDLKCLPNLDSPPSSVPSDGADDDDTVARLSAILTTNAVNDFSFKRVPSDYYDWPLEARRDVLDAAS
        MGTE+ AMAE+NSMEA                 L+L  LPNLDS PS + S+GAD D TVARLS IL TNAVNDFSFKRVPSDYYDW LEARRDVL+AAS
Subjt:  MGTESEAMAEQNSMEA---------------QNLDLKCLPNLDSPPSSVPSDGADDDDTVARLSAILTTNAVNDFSFKRVPSDYYDWPLEARRDVLDAAS

Query:  IDHLCKSIVLVNTQAPSHIVDCSDRNNSKYYIVVVQYTAKFNAETIRSFLYSLNDGKIAKKKFNLRLAPEEISAKLTGYEHNGVTCIGMKTDIPVILDEA
        +DHLCKSIVLVNTQA SH+VDCS+RNNSKYY+VVVQY+AKFNAET+RSFLYSLNDGKI KKKFNLRLAPEEISA+LTGY HN VTCIGMKTDIPVILDEA
Subjt:  IDHLCKSIVLVNTQAPSHIVDCSDRNNSKYYIVVVQYTAKFNAETIRSFLYSLNDGKIAKKKFNLRLAPEEISAKLTGYEHNGVTCIGMKTDIPVILDEA

Query:  IVKLNPDYFWLGGGETDLKLGIRTSEFVNYVKPFIIKCS
        I KL+PDYFWLGGGE DLKLGIRTSEF+N+VKPFIIKCS
Subjt:  IVKLNPDYFWLGGGETDLKLGIRTSEFVNYVKPFIIKCS

XP_023538668.1 uncharacterized protein LOC111799544 [Cucurbita pepo subsp. pepo]

2.06e-127

78.66

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Query:  MGTESEAMAEQNSMEAQ---------------NLDLKCLPNLDSPPSSVPSDGADDDDTVARLSAILTTNAVNDFSFKRVPSDYYDWPLEARRDVLDAAS
        MGTE+ AMAE+NSMEA                 L+L  LPNLDS PS + SD AD D TV+RLS IL TNAVNDFSFKRVPSDYYDW LEARRDVL+AAS
Subjt:  MGTESEAMAEQNSMEAQ---------------NLDLKCLPNLDSPPSSVPSDGADDDDTVARLSAILTTNAVNDFSFKRVPSDYYDWPLEARRDVLDAAS

Query:  IDHLCKSIVLVNTQAPSHIVDCSDRNNSKYYIVVVQYTAKFNAETIRSFLYSLNDGKIAKKKFNLRLAPEEISAKLTGYEHNGVTCIGMKTDIPVILDEA
        +DHLCKSIVLVNTQA SH+VDCS+RNNSKYY+VVVQY+AKFNAET+RSFLYSLNDGKI KKKFNLRLAPEEISA+LTGY HN VTCIGMKTDIPVILDEA
Subjt:  IDHLCKSIVLVNTQAPSHIVDCSDRNNSKYYIVVVQYTAKFNAETIRSFLYSLNDGKIAKKKFNLRLAPEEISAKLTGYEHNGVTCIGMKTDIPVILDEA

Query:  IVKLNPDYFWLGGGETDLKLGIRTSEFVNYVKPFIIKCS
        I KL+PDYFWLGGGE DLKLGIRTSEF+N+VKPFIIKCS
Subjt:  IVKLNPDYFWLGGGETDLKLGIRTSEFVNYVKPFIIKCS

XP_038903466.1 uncharacterized protein LOC120090048 [Benincasa hispida]

7.71e-139

84.52

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Query:  MGTESEAMAEQNSMEA---------------QNLDLKCLPNLDSPPSSVPSDGADDDDTVARLSAILTTNAVNDFSFKRVPSDYYDWPLEARRDVLDAAS
        MGTESEAMAEQN MEA                 L+L  LPNLDS  SSVPSDG +D DTVARLSAIL TN+VNDFSFKRVPSDYYDWPLEARRDVLDAAS
Subjt:  MGTESEAMAEQNSMEA---------------QNLDLKCLPNLDSPPSSVPSDGADDDDTVARLSAILTTNAVNDFSFKRVPSDYYDWPLEARRDVLDAAS

Query:  IDHLCKSIVLVNTQAPSHIVDCSDRNNSKYYIVVVQYTAKFNAETIRSFLYSLNDGKIAKKKFNLRLAPEEISAKLTGYEHNGVTCIGMKTDIPVILDEA
        +DHLCKSIVLVNTQAPSH+VDCSDRNNSKYYIVVVQYTAKFNAET++SFLYSLNDGKIAKKKFNLRLAPEE SAKLTGYEHNGVTCIGM+TDIPVILDEA
Subjt:  IDHLCKSIVLVNTQAPSHIVDCSDRNNSKYYIVVVQYTAKFNAETIRSFLYSLNDGKIAKKKFNLRLAPEEISAKLTGYEHNGVTCIGMKTDIPVILDEA

Query:  IVKLNPDYFWLGGGETDLKLGIRTSEFVNYVKPFIIKCS
        IVKLNPDYFWLGGGE DLKLGIRTSEF+N+VKPFIIKCS
Subjt:  IVKLNPDYFWLGGGETDLKLGIRTSEFVNYVKPFIIKCS

TrEMBL top hits

e value

%identity

Alignment

A0A0A0L4A0 tRNA_edit domain-containing protein

1.03e-160

99.55

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Query:  MGTESEAMAEQNSMEAQNLDLKCLPNLDSPPSSVPSDGADDDDTVARLSAILTTNAVNDFSFKRVPSDYYDWPLEARRDVLDAASIDHLCKSIVLVNTQA
        MGTESEAMAEQNSMEAQNLDLKCLPNLDSPPSSVPSDGADDDDTVARLSAILTTNAVNDFSFKRVPSDYYDWPLEARRDVLDAASIDHLCKSIVLVNTQA
Subjt:  MGTESEAMAEQNSMEAQNLDLKCLPNLDSPPSSVPSDGADDDDTVARLSAILTTNAVNDFSFKRVPSDYYDWPLEARRDVLDAASIDHLCKSIVLVNTQA

Query:  PSHIVDCSDRNNSKYYIVVVQYTAKFNAETIRSFLYSLNDGKIAKKKFNLRLAPEEISAKLTGYEHNGVTCIGMKTDIPVILDEAIVKLNPDYFWLGGGE
        PSHIVDCSDRNNSKYYIVVVQYTAKFNAETIRSFLYSLNDGKIAKKKFNLRLAPEEISAKLTGYEHNGVTCIGMKTDIPVILDEAIVKLNPDYFWLGGGE
Subjt:  PSHIVDCSDRNNSKYYIVVVQYTAKFNAETIRSFLYSLNDGKIAKKKFNLRLAPEEISAKLTGYEHNGVTCIGMKTDIPVILDEAIVKLNPDYFWLGGGE

Query:  TDLKLGIRTSEFVNYVKPFIIKCS
        TDLKLGIRTSEF+NYVKPFIIKCS
Subjt:  TDLKLGIRTSEFVNYVKPFIIKCS

A0A1S3BLB4 uncharacterized protein LOC103490895

1.16e-143

87.03

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Query:  MGTESEAMAEQNSMEA---------------QNLDLKCLPNLDSPPSSVPSDGADDDDTVARLSAILTTNAVNDFSFKRVPSDYYDWPLEARRDVLDAAS
        MG+ESEAMAEQNSMEA                NL+LK LPNLDSPPSSVPSDGADDD TVARLSAIL TNAVNDFSFKRVPSDYYDW LEARRDVLDAAS
Subjt:  MGTESEAMAEQNSMEA---------------QNLDLKCLPNLDSPPSSVPSDGADDDDTVARLSAILTTNAVNDFSFKRVPSDYYDWPLEARRDVLDAAS

Query:  IDHLCKSIVLVNTQAPSHIVDCSDRNNSKYYIVVVQYTAKFNAETIRSFLYSLNDGKIAKKKFNLRLAPEEISAKLTGYEHNGVTCIGMKTDIPVILDEA
        IDHLCKSIVLVNTQAPSH+VDCSDRNNSKYYIVVVQYTAKFNAE ++SFLYSLNDGKIAKKKFNLRLAPEE S KLTGYEHNGVTCIGMKTDIPVILDEA
Subjt:  IDHLCKSIVLVNTQAPSHIVDCSDRNNSKYYIVVVQYTAKFNAETIRSFLYSLNDGKIAKKKFNLRLAPEEISAKLTGYEHNGVTCIGMKTDIPVILDEA

Query:  IVKLNPDYFWLGGGETDLKLGIRTSEFVNYVKPFIIKCS
        IVKLNPDYFWLGGGE DLKLGIRTSEF+N+VKPFIIKCS
Subjt:  IVKLNPDYFWLGGGETDLKLGIRTSEFVNYVKPFIIKCS

A0A6J1DMB4 uncharacterized protein LOC111021353

1.93e-118

88.36

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Query:  SDGADDDDTVARLSAILTTNAVNDFSFKRVPSDYYDWPLEARRDVLDAASIDHLCKSIVLVNTQAPSHIVDCSDRNNSKYYIVVVQYTAKFNAETIRSFL
        S GAD D TVARLSAIL TNAV+DFSFKRVP DYYDWPLEARRDVL A S+DHLCKSIVLVNTQAPS++VDCS+RNNSKYY+VVVQYTAKF+AET+++FL
Subjt:  SDGADDDDTVARLSAILTTNAVNDFSFKRVPSDYYDWPLEARRDVLDAASIDHLCKSIVLVNTQAPSHIVDCSDRNNSKYYIVVVQYTAKFNAETIRSFL

Query:  YSLNDGKIAKKKFNLRLAPEEISAKLTGYEHNGVTCIGMKTDIPVILDEAIVKLNPDYFWLGGGETDLKLGIRTSEFVNYVKPFIIKCS
        YSLNDGKIAKKKFNLRLAPEE SAKLTGYEHNGVTCIGMKTDIPVILDEAI KLNPDYFWLGGGE DLKLGIRTSEFVN+VKPFI+KCS
Subjt:  YSLNDGKIAKKKFNLRLAPEEISAKLTGYEHNGVTCIGMKTDIPVILDEAIVKLNPDYFWLGGGETDLKLGIRTSEFVNYVKPFIIKCS

A0A6J1GI39 uncharacterized protein LOC111454353

4.24e-129

79.08

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Query:  MGTESEAMAEQNSMEA---------------QNLDLKCLPNLDSPPSSVPSDGADDDDTVARLSAILTTNAVNDFSFKRVPSDYYDWPLEARRDVLDAAS
        MGTE+ AMAE+NSMEA                 L+L  LPNLDS PS + S+GAD D TVARLS IL TNAVNDFSFKRVPSDYYDW LEARRDVL+AAS
Subjt:  MGTESEAMAEQNSMEA---------------QNLDLKCLPNLDSPPSSVPSDGADDDDTVARLSAILTTNAVNDFSFKRVPSDYYDWPLEARRDVLDAAS

Query:  IDHLCKSIVLVNTQAPSHIVDCSDRNNSKYYIVVVQYTAKFNAETIRSFLYSLNDGKIAKKKFNLRLAPEEISAKLTGYEHNGVTCIGMKTDIPVILDEA
        +DHLCKSIVLVNTQA SH+VDCS+RNNSKYY+VVVQY+AKFNAET+RSFLYSLNDGKI KKKFNLRLAPEEISA+LTGY HN VTCIGMKTDIPVILDEA
Subjt:  IDHLCKSIVLVNTQAPSHIVDCSDRNNSKYYIVVVQYTAKFNAETIRSFLYSLNDGKIAKKKFNLRLAPEEISAKLTGYEHNGVTCIGMKTDIPVILDEA

Query:  IVKLNPDYFWLGGGETDLKLGIRTSEFVNYVKPFIIKCS
        I KL+PDYFWLGGGE DLKLGIRTSEF+N+VKPFIIKCS
Subjt:  IVKLNPDYFWLGGGETDLKLGIRTSEFVNYVKPFIIKCS

A0A6J1KXM4 uncharacterized protein LOC111498483

1.16e-126

77.82

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Query:  MGTESEAMAEQNSMEA---------------QNLDLKCLPNLDSPPSSVPSDGADDDDTVARLSAILTTNAVNDFSFKRVPSDYYDWPLEARRDVLDAAS
        MGTE+ A+AE+NSMEA                 L+L  LPNLDS PS + SD AD D TV+RLS IL TNAVNDFSF RVPSDYYDW LEARRDVL+AAS
Subjt:  MGTESEAMAEQNSMEA---------------QNLDLKCLPNLDSPPSSVPSDGADDDDTVARLSAILTTNAVNDFSFKRVPSDYYDWPLEARRDVLDAAS

Query:  IDHLCKSIVLVNTQAPSHIVDCSDRNNSKYYIVVVQYTAKFNAETIRSFLYSLNDGKIAKKKFNLRLAPEEISAKLTGYEHNGVTCIGMKTDIPVILDEA
        +DHLCKSIVLVNTQA SH+VDCS+RNNSKYY+VVVQY+AKFNAET+RSFLYSLNDGKI KKKFNLRLAPEEISA+LTGY HN VTCIGMKTDIPVILDEA
Subjt:  IDHLCKSIVLVNTQAPSHIVDCSDRNNSKYYIVVVQYTAKFNAETIRSFLYSLNDGKIAKKKFNLRLAPEEISAKLTGYEHNGVTCIGMKTDIPVILDEA

Query:  IVKLNPDYFWLGGGETDLKLGIRTSEFVNYVKPFIIKCS
        I KL+PDYFWLGGGE DLKLGIRTSEF+N+VKPFIIKCS
Subjt:  IVKLNPDYFWLGGGETDLKLGIRTSEFVNYVKPFIIKCS

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT4G16510.1 YbaK/aminoacyl-tRNA synthetase-associated domain

3.0e-85

72.33

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Query:  LDLKCLPNLDSPPSSVPSDGADDDDTVARLSAILTTNAVNDFSFKRVPSDYYDWPLEARRDVLDAASIDHLCKSIVLVNTQAPSHIVDCSDRNNSKYYIV
        L+   LP   S   S PS   D+++TV RLS IL +  VNDF FKRV +DYYDWPLE+RRDVL A+S+DHLCKSIVLVNTQA S+I+DCSD NNSKYY+V
Subjt:  LDLKCLPNLDSPPSSVPSDGADDDDTVARLSAILTTNAVNDFSFKRVPSDYYDWPLEARRDVLDAASIDHLCKSIVLVNTQAPSHIVDCSDRNNSKYYIV

Query:  VVQYTAKFNAETIRSFLYSLNDGKIAKKKFNLRLAPEEISAKLTGYEHNGVTCIGMKTDIPVILDEAIVKLNPDYFWLGGGETDLKLGIRTSEFVNYVKP
        VVQYTA+FNAE ++ FLYSLN+GKI KK+FNLRLAPEE S KLTG+EHNGVTCIGMKT+IPVILDEAI KL PD+FWLGGGE DLKLG+RTSEF+ +VKP
Subjt:  VVQYTAKFNAETIRSFLYSLNDGKIAKKKFNLRLAPEEISAKLTGYEHNGVTCIGMKTDIPVILDEAIVKLNPDYFWLGGGETDLKLGIRTSEFVNYVKP

Query:  FIIKCS
        FI+ CS
Subjt:  FIIKCS

Sequences

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CDS sequence

Show/hide CDS sequence

ATGGGAACTGAAAGTGAAGCAATGGCAGAGCAGAACTCCATGGAAGCACAGAACCTCGACCTCAAATGCCTTCCAAATCTTGACTCTCCTCCTTCCTCTGTTCCTTCTGA
TGGTGCTGATGACGACGACACCGTGGCTCGACTCTCTGCCATTCTCACAACCAACGCTGTCAACGACTTTTCCTTCAAAAGGGTGCCTTCCGATTACTACGATTGGCCCC
TCGAAGCGCGACGGGACGTTCTTGATGCTGCCTCTATCGACCATCTCTGCAAGAGCATCGTTCTGGTAAATACTCAAGCCCCATCCCATATTGTTGATTGCAGTGATCGC
AACAATTCAAAATACTATATTGTTGTTGTTCAGTATACTGCCAAATTTAATGCTGAAACGATTAGAAGCTTCCTGTATTCACTCAATGATGGCAAGATAGCAAAAAAGAA
ATTCAACTTGAGACTTGCTCCAGAGGAGATATCTGCAAAACTAACTGGATATGAGCATAATGGAGTGACGTGCATTGGCATGAAAACGGATATTCCAGTGATTTTGGATG
AAGCGATTGTGAAACTAAATCCTGATTATTTTTGGTTGGGCGGTGGAGAAACCGACCTGAAGTTGGGAATCAGGACATCGGAATTCGTAAACTATGTCAAACCCTTCATT
ATCAAGTGTAGTTAG

mRNA sequence

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Protein sequence

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MGTESEAMAEQNSMEAQNLDLKCLPNLDSPPSSVPSDGADDDDTVARLSAILTTNAVNDFSFKRVPSDYYDWPLEARRDVLDAASIDHLCKSIVLVNTQAPSHIVDCSDR
NNSKYYIVVVQYTAKFNAETIRSFLYSLNDGKIAKKKFNLRLAPEEISAKLTGYEHNGVTCIGMKTDIPVILDEAIVKLNPDYFWLGGGETDLKLGIRTSEFVNYVKPFI
IKCS

Cucsat.G115 (gene) of Cucumber (B10) v3 genome