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Cucsat.G11588 (gene) of Cucumber (B10) v3 genome

Gene IDCucsat.G11588
OrganismCucumis sativus L. var. sativus cv. B10 (Cucumber (B10) v3)
DescriptionRetrotransposon protein
Genome locationctg1820:820287..825491
RNA-Seq ExpressionCucsat.G11588
SyntenyCucsat.G11588
Gene Ontology termsGO:0005488 - binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0048148.1 retrotransposon protein [Cucumis melo var. makuwa]6.75e-1949.44Show/hide
Query:  MFRKDCVTRARVETFIDVGSNKSGEYEGFPHEDGIDMEIPTMYSQGLNMLPEDVMDARHGRSSDCKLGSSGSKRKWGGQNMDIVDVIRD
        +F KD  T A  ETF D+ SN S  Y+  P +DGIDME P M S  +NM P+D+M  R GRSSD + GSS  KRK   Q  +  D+IR+
Subjt:  MFRKDCVTRARVETFIDVGSNKSGEYEGFPHEDGIDMEIPTMYSQGLNMLPEDVMDARHGRSSDCKLGSSGSKRKWGGQNMDIVDVIRD

KAA0051415.1 retrotransposon protein [Cucumis melo var. makuwa]2.16e-1956.41Show/hide
Query:  TRARVETFIDVGSNKSGEYEGFPHEDGIDMEIPTMYSQGLNMLPEDVMDARHGRSSDCKLGSSGSKRKWGGQNMDIVD
        TR R ETFIDV SN    Y+GFP  DG DM I TMY+QG NM  EDV   +  R+SD ++ SS SKRK GGQ+M+ +D
Subjt:  TRARVETFIDVGSNKSGEYEGFPHEDGIDMEIPTMYSQGLNMLPEDVMDARHGRSSDCKLGSSGSKRKWGGQNMDIVD

KAA0056167.1 retrotransposon protein [Cucumis melo var. makuwa]1.81e-1851.72Show/hide
Query:  MFRKDCVTRARVETFIDVGSNKSGEYEGFPHEDGIDMEIPTMYSQGLNMLPEDVMDARHGRSSDCKLGSSGSKRKWGGQNMDIVDVI
        +F +D  T   VETF++VGSN  G YEGF   DG D+EIP+MYSQGL+M  +D+M  R  ++SD +  SS SKRKW GQ ++ V +I
Subjt:  MFRKDCVTRARVETFIDVGSNKSGEYEGFPHEDGIDMEIPTMYSQGLNMLPEDVMDARHGRSSDCKLGSSGSKRKWGGQNMDIVDVI

KAA0060529.1 retrotransposon protein [Cucumis melo var. makuwa]2.44e-2257.32Show/hide
Query:  RARVETFIDVGSNKSGEYEGFPHEDGIDMEIPTMYSQGLNMLPEDVMDARHGRSSDCKLGSSGSKRKWGGQNMDIVDVIRDV
        R  VETF DVGSN    YEGF  +DG DMEIP MYSQG++ML +D+M  R  RS++ + GSSGSKRK GGQ ++ +++IR+V
Subjt:  RARVETFIDVGSNKSGEYEGFPHEDGIDMEIPTMYSQGLNMLPEDVMDARHGRSSDCKLGSSGSKRKWGGQNMDIVDVIRDV

KAA0061395.1 retrotransposon protein [Cucumis melo var. makuwa]2.62e-2052.75Show/hide
Query:  MFRKDCVTRARVETFIDVGSNKSGEYEGFPH-EDGIDMEIPTMYSQGLNMLPEDVMDARHGRSSDCKLGSSGSKRKWGGQNMDIVDVIRDV
        +F +DC T  R+ETF+DV SN SG YEG    +DG ++EIPTMYSQGL+M P D+M  R  R+S  +  SS  KRK GGQ+++I  VI  V
Subjt:  MFRKDCVTRARVETFIDVGSNKSGEYEGFPH-EDGIDMEIPTMYSQGLNMLPEDVMDARHGRSSDCKLGSSGSKRKWGGQNMDIVDVIRDV

TrEMBL top hitse value%identityAlignment
A0A5A7TYU4 Retrotransposon protein3.27e-1949.44Show/hide
Query:  MFRKDCVTRARVETFIDVGSNKSGEYEGFPHEDGIDMEIPTMYSQGLNMLPEDVMDARHGRSSDCKLGSSGSKRKWGGQNMDIVDVIRD
        +F KD  T A  ETF D+ SN S  Y+  P +DGIDME P M S  +NM P+D+M  R GRSSD + GSS  KRK   Q  +  D+IR+
Subjt:  MFRKDCVTRARVETFIDVGSNKSGEYEGFPHEDGIDMEIPTMYSQGLNMLPEDVMDARHGRSSDCKLGSSGSKRKWGGQNMDIVDVIRD

A0A5A7UNI7 Retrotransposon protein8.79e-1951.72Show/hide
Query:  MFRKDCVTRARVETFIDVGSNKSGEYEGFPHEDGIDMEIPTMYSQGLNMLPEDVMDARHGRSSDCKLGSSGSKRKWGGQNMDIVDVI
        +F +D  T   VETF++VGSN  G YEGF   DG D+EIP+MYSQGL+M  +D+M  R  ++SD +  SS SKRKW GQ ++ V +I
Subjt:  MFRKDCVTRARVETFIDVGSNKSGEYEGFPHEDGIDMEIPTMYSQGLNMLPEDVMDARHGRSSDCKLGSSGSKRKWGGQNMDIVDVI

A0A5A7V469 Retrotransposon protein1.18e-2257.32Show/hide
Query:  RARVETFIDVGSNKSGEYEGFPHEDGIDMEIPTMYSQGLNMLPEDVMDARHGRSSDCKLGSSGSKRKWGGQNMDIVDVIRDV
        R  VETF DVGSN    YEGF  +DG DMEIP MYSQG++ML +D+M  R  RS++ + GSSGSKRK GGQ ++ +++IR+V
Subjt:  RARVETFIDVGSNKSGEYEGFPHEDGIDMEIPTMYSQGLNMLPEDVMDARHGRSSDCKLGSSGSKRKWGGQNMDIVDVIRDV

A0A5D3CX17 Retrotransposon protein1.27e-2052.75Show/hide
Query:  MFRKDCVTRARVETFIDVGSNKSGEYEGFPH-EDGIDMEIPTMYSQGLNMLPEDVMDARHGRSSDCKLGSSGSKRKWGGQNMDIVDVIRDV
        +F +DC T  R+ETF+DV SN SG YEG    +DG ++EIPTMYSQGL+M P D+M  R  R+S  +  SS  KRK GGQ+++I  VI  V
Subjt:  MFRKDCVTRARVETFIDVGSNKSGEYEGFPH-EDGIDMEIPTMYSQGLNMLPEDVMDARHGRSSDCKLGSSGSKRKWGGQNMDIVDVIRDV

A0A5D3DG43 Retrotransposon protein1.05e-1956.41Show/hide
Query:  TRARVETFIDVGSNKSGEYEGFPHEDGIDMEIPTMYSQGLNMLPEDVMDARHGRSSDCKLGSSGSKRKWGGQNMDIVD
        TR R ETFIDV SN    Y+GFP  DG DM I TMY+QG NM  EDV   +  R+SD ++ SS SKRK GGQ+M+ +D
Subjt:  TRARVETFIDVGSNKSGEYEGFPHEDGIDMEIPTMYSQGLNMLPEDVMDARHGRSSDCKLGSSGSKRKWGGQNMDIVD

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTCAGGAAAGATTGTGTAACGAGGGCACGTGTAGAGACATTCATCGATGTTGGGTCCAATAAATCGGGTGAGTACGAGGGATTTCCACATGAAGATGGAATCGATAT
GGAGATTCCTACTATGTACAGCCAAGGCCTGAACATGTTGCCTGAGGACGTAATGGACGCACGACATGGTCGATCAAGTGACTGTAAACTGGGTTCGAGTGGATCAAAGA
GGAAGTGGGGAGGACAAAATATGGACATTGTGGACGTCATTCGCGATGTCAATGGAATTTTCAAATTACCCGCTGAGGGCCATTGCGGATTGGCAGAAGTTAGTTATGCA
GGATGA
mRNA sequenceShow/hide mRNA sequence
ATGTTCAGGAAAGATTGTGTAACGAGGGCACGTGTAGAGACATTCATCGATGTTGGGTCCAATAAATCGGGTGAGTACGAGGGATTTCCACATGAAGATGGAATCGATAT
GGAGATTCCTACTATGTACAGCCAAGGCCTGAACATGTTGCCTGAGGACGTAATGGACGCACGACATGGTCGATCAAGTGACTGTAAACTGGGTTCGAGTGGATCAAAGA
GGAAGTGGGGAGGACAAAATATGGACATTGTGGACGTCATTCGCGATGTCAATGGAATTTTCAAATTACCCGCTGAGGGCCATTGCGGATTGGCAGAAGTTAGTTATGCA
GGATGA
Protein sequenceShow/hide protein sequence
MFRKDCVTRARVETFIDVGSNKSGEYEGFPHEDGIDMEIPTMYSQGLNMLPEDVMDARHGRSSDCKLGSSGSKRKWGGQNMDIVDVIRDVNGIFKLPAEGHCGLAEVSYA
G