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Cucsat.G11813 (gene) of Cucumber (B10) v3 genome

Gene IDCucsat.G11813
OrganismCucumis sativus L. var. sativus cv. B10 (Cucumber (B10) v3)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationctg1820:1496633..1498226
RNA-Seq ExpressionCucsat.G11813
SyntenyCucsat.G11813
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0041367.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]1.16e-3151.72Show/hide
Query:  MRWSVITTSKEKDGLGINRVIDTVFFLLCKWLCGFHYEKSPLWKCIILAKYDQSFVGEIPMKGKYCSLKAPWLSIIKGVDWFISHIHWKINEGASLSFRK
        + W+ IT+ KE+ GLGI+R+ DT F LL KWL  + +E SPLWK II AKY     G+IP    + S ++PW SI KGV+WF  H+ WKI  G S SF  
Subjt:  MRWSVITTSKEKDGLGINRVIDTVFFLLCKWLCGFHYEKSPLWKCIILAKYDQSFVGEIPMKGKYCSLKAPWLSIIKGVDWFISHIHWKINEGASLSFRK

Query:  TLWHENSPLHLCRPRL
        + WH+NSPL L  PRL
Subjt:  TLWHENSPLHLCRPRL

KAA0041397.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]1.26e-3148.28Show/hide
Query:  MRWSVITTSKEKDGLGINRVIDTVFFLLCKWLCGFHYEKSPLWKCIILAKYDQSFVGEIPMKGKYCSLKAPWLSIIKGVDWFISHIHWKINEGASLSFRK
        +RW+ + + KEK GLGI+ V  T F LLCKWL  F  EK PLWK +I++KYDQ  +G  P +GKY S  +PW ++   + WF  +I WK+N+G  +SF  
Subjt:  MRWSVITTSKEKDGLGINRVIDTVFFLLCKWLCGFHYEKSPLWKCIILAKYDQSFVGEIPMKGKYCSLKAPWLSIIKGVDWFISHIHWKINEGASLSFRK

Query:  TLWHENSPLHLCRPRL
          W+ NSPL L  PRL
Subjt:  TLWHENSPLHLCRPRL

KAA0044556.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]1.71e-3148.28Show/hide
Query:  MRWSVITTSKEKDGLGINRVIDTVFFLLCKWLCGFHYEKSPLWKCIILAKYDQSFVGEIPMKGKYCSLKAPWLSIIKGVDWFISHIHWKINEGASLSFRK
        +RW+ + + KEK GLGI+ V  T F LLCKWL  F  EK PLWK +I++KYDQ  +G  P +GKY S  +PW ++   + WF  +I WK+N+G  +SF  
Subjt:  MRWSVITTSKEKDGLGINRVIDTVFFLLCKWLCGFHYEKSPLWKCIILAKYDQSFVGEIPMKGKYCSLKAPWLSIIKGVDWFISHIHWKINEGASLSFRK

Query:  TLWHENSPLHLCRPRL
          W+ NSPL L  PRL
Subjt:  TLWHENSPLHLCRPRL

KAA0065894.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]1.11e-3250.86Show/hide
Query:  MRWSVITTSKEKDGLGINRVIDTVFFLLCKWLCGFHYEKSPLWKCIILAKYDQSFVGEIPMKGKYCSLKAPWLSIIKGVDWFISHIHWKINEGASLSFRK
        +RWS++TT K K GLGI  V DT   LLCKWL  F  EK  LW  +I  KY    +G+IP K KY ++K PW  IIKG+ WF +H  WKINEG +LSF  
Subjt:  MRWSVITTSKEKDGLGINRVIDTVFFLLCKWLCGFHYEKSPLWKCIILAKYDQSFVGEIPMKGKYCSLKAPWLSIIKGVDWFISHIHWKINEGASLSFRK

Query:  TLWHENSPLHLCRPRL
        + W  + PL    PRL
Subjt:  TLWHENSPLHLCRPRL

TYK05764.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]1.12e-3250.86Show/hide
Query:  MRWSVITTSKEKDGLGINRVIDTVFFLLCKWLCGFHYEKSPLWKCIILAKYDQSFVGEIPMKGKYCSLKAPWLSIIKGVDWFISHIHWKINEGASLSFRK
        +RWS++T+ K K GLGINR+ DT F LL KWL  F +E  PLWK  I  KY+ S  G+IP K  Y S ++PW S+I+G+DWF S + WKI    + SF  
Subjt:  MRWSVITTSKEKDGLGINRVIDTVFFLLCKWLCGFHYEKSPLWKCIILAKYDQSFVGEIPMKGKYCSLKAPWLSIIKGVDWFISHIHWKINEGASLSFRK

Query:  TLWHENSPLHLCRPRL
        + WH NSPL +  PRL
Subjt:  TLWHENSPLHLCRPRL

TrEMBL top hitse value%identityAlignment
A0A5A7TI93 LINE-1 retrotransposable element ORF2 protein5.63e-3251.72Show/hide
Query:  MRWSVITTSKEKDGLGINRVIDTVFFLLCKWLCGFHYEKSPLWKCIILAKYDQSFVGEIPMKGKYCSLKAPWLSIIKGVDWFISHIHWKINEGASLSFRK
        + W+ IT+ KE+ GLGI+R+ DT F LL KWL  + +E SPLWK II AKY     G+IP    + S ++PW SI KGV+WF  H+ WKI  G S SF  
Subjt:  MRWSVITTSKEKDGLGINRVIDTVFFLLCKWLCGFHYEKSPLWKCIILAKYDQSFVGEIPMKGKYCSLKAPWLSIIKGVDWFISHIHWKINEGASLSFRK

Query:  TLWHENSPLHLCRPRL
        + WH+NSPL L  PRL
Subjt:  TLWHENSPLHLCRPRL

A0A5A7TIB8 LINE-1 retrotransposable element ORF2 protein6.12e-3248.28Show/hide
Query:  MRWSVITTSKEKDGLGINRVIDTVFFLLCKWLCGFHYEKSPLWKCIILAKYDQSFVGEIPMKGKYCSLKAPWLSIIKGVDWFISHIHWKINEGASLSFRK
        +RW+ + + KEK GLGI+ V  T F LLCKWL  F  EK PLWK +I++KYDQ  +G  P +GKY S  +PW ++   + WF  +I WK+N+G  +SF  
Subjt:  MRWSVITTSKEKDGLGINRVIDTVFFLLCKWLCGFHYEKSPLWKCIILAKYDQSFVGEIPMKGKYCSLKAPWLSIIKGVDWFISHIHWKINEGASLSFRK

Query:  TLWHENSPLHLCRPRL
          W+ NSPL L  PRL
Subjt:  TLWHENSPLHLCRPRL

A0A5A7TR15 LINE-1 retrotransposable element ORF2 protein8.29e-3248.28Show/hide
Query:  MRWSVITTSKEKDGLGINRVIDTVFFLLCKWLCGFHYEKSPLWKCIILAKYDQSFVGEIPMKGKYCSLKAPWLSIIKGVDWFISHIHWKINEGASLSFRK
        +RW+ + + KEK GLGI+ V  T F LLCKWL  F  EK PLWK +I++KYDQ  +G  P +GKY S  +PW ++   + WF  +I WK+N+G  +SF  
Subjt:  MRWSVITTSKEKDGLGINRVIDTVFFLLCKWLCGFHYEKSPLWKCIILAKYDQSFVGEIPMKGKYCSLKAPWLSIIKGVDWFISHIHWKINEGASLSFRK

Query:  TLWHENSPLHLCRPRL
          W+ NSPL L  PRL
Subjt:  TLWHENSPLHLCRPRL

A0A5A7VF18 LINE-1 retrotransposable element ORF2 protein5.38e-3350.86Show/hide
Query:  MRWSVITTSKEKDGLGINRVIDTVFFLLCKWLCGFHYEKSPLWKCIILAKYDQSFVGEIPMKGKYCSLKAPWLSIIKGVDWFISHIHWKINEGASLSFRK
        +RWS++TT K K GLGI  V DT   LLCKWL  F  EK  LW  +I  KY    +G+IP K KY ++K PW  IIKG+ WF +H  WKINEG +LSF  
Subjt:  MRWSVITTSKEKDGLGINRVIDTVFFLLCKWLCGFHYEKSPLWKCIILAKYDQSFVGEIPMKGKYCSLKAPWLSIIKGVDWFISHIHWKINEGASLSFRK

Query:  TLWHENSPLHLCRPRL
        + W  + PL    PRL
Subjt:  TLWHENSPLHLCRPRL

A0A5D3C384 LINE-1 retrotransposable element ORF2 protein5.41e-3350.86Show/hide
Query:  MRWSVITTSKEKDGLGINRVIDTVFFLLCKWLCGFHYEKSPLWKCIILAKYDQSFVGEIPMKGKYCSLKAPWLSIIKGVDWFISHIHWKINEGASLSFRK
        +RWS++T+ K K GLGINR+ DT F LL KWL  F +E  PLWK  I  KY+ S  G+IP K  Y S ++PW S+I+G+DWF S + WKI    + SF  
Subjt:  MRWSVITTSKEKDGLGINRVIDTVFFLLCKWLCGFHYEKSPLWKCIILAKYDQSFVGEIPMKGKYCSLKAPWLSIIKGVDWFISHIHWKINEGASLSFRK

Query:  TLWHENSPLHLCRPRL
        + WH NSPL +  PRL
Subjt:  TLWHENSPLHLCRPRL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGGTGGTCAGTCATTACAACCTCCAAAGAAAAGGATGGCCTTGGCATAAATCGTGTTATAGATACAGTTTTTTTCCTTCTTTGCAAATGGCTTTGTGGATTCCACTA
TGAAAAAAGCCCTTTGTGGAAGTGCATCATCTTGGCTAAATATGATCAATCATTTGTTGGAGAAATTCCGATGAAGGGCAAATACTGCAGTCTCAAAGCTCCTTGGTTAT
CTATTATTAAGGGAGTGGATTGGTTCATTTCCCATATTCATTGGAAGATAAATGAAGGTGCTTCCCTTTCTTTCCGGAAGACATTATGGCATGAAAATAGCCCTCTACAC
CTATGCAGACCCAGACTTTCGCCCTCTCTACAAAGCAAAATGGTACTATAA
mRNA sequenceShow/hide mRNA sequence
ATGAGGTGGTCAGTCATTACAACCTCCAAAGAAAAGGATGGCCTTGGCATAAATCGTGTTATAGATACAGTTTTTTTCCTTCTTTGCAAATGGCTTTGTGGATTCCACTA
TGAAAAAAGCCCTTTGTGGAAGTGCATCATCTTGGCTAAATATGATCAATCATTTGTTGGAGAAATTCCGATGAAGGGCAAATACTGCAGTCTCAAAGCTCCTTGGTTAT
CTATTATTAAGGGAGTGGATTGGTTCATTTCCCATATTCATTGGAAGATAAATGAAGGTGCTTCCCTTTCTTTCCGGAAGACATTATGGCATGAAAATAGCCCTCTACAC
CTATGCAGACCCAGACTTTCGCCCTCTCTACAAAGCAAAATGGTACTATAA
Protein sequenceShow/hide protein sequence
MRWSVITTSKEKDGLGINRVIDTVFFLLCKWLCGFHYEKSPLWKCIILAKYDQSFVGEIPMKGKYCSLKAPWLSIIKGVDWFISHIHWKINEGASLSFRKTLWHENSPLH
LCRPRLSPSLQSKMVL