; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cucsat.G1182 (gene) of Cucumber (B10) v3 genome

Gene IDCucsat.G1182
OrganismCucumis sativus L. var. sativus cv. B10 (Cucumber (B10) v3)
Description50S ribosomal protein L28
Genome locationctg1:9125374..9126932
RNA-Seq ExpressionCucsat.G1182
SyntenyCucsat.G1182
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005762 - mitochondrial large ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR001383 - Ribosomal protein L28
IPR026569 - Ribosomal protein L28/L24
IPR034704 - L28p-like
IPR037147 - Ribosomal protein L28/L24 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004134049.1 50S ribosomal protein L28, chloroplastic [Cucumis sativus]3.84e-9598.67Show/hide
Query:  MAASVVFGFTPAATCSGVMTTSSTKLHFRTKPSSDLGFLTSQLSGIRISSNHSLISPSSISTAPLRPSLQPVARRICPFTGKKANKKNLVSFSNHKTKKL
        MAASVVFGFTPAATCSGVMTTSSTKLHFRTKP+SDLGFLTSQLSGIRISSNHSLISP+SISTAPLRPSLQPVARRICPFTGKKANKKNLVSFSNHKTKKL
Subjt:  MAASVVFGFTPAATCSGVMTTSSTKLHFRTKPSSDLGFLTSQLSGIRISSNHSLISPSSISTAPLRPSLQPVARRICPFTGKKANKKNLVSFSNHKTKKL

Query:  QFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
        QFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
Subjt:  QFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE

XP_008438484.1 PREDICTED: 50S ribosomal protein L28, chloroplastic [Cucumis melo]8.33e-9094Show/hide
Query:  MAASVVFGFTPAATCSGVMTTSSTKLHFRTKPSSDLGFLTSQLSGIRISSNHSLISPSSISTAPLRPSLQPVARRICPFTGKKANKKNLVSFSNHKTKKL
        MAASVVFGFTPAAT +GVM TSSTKLHFRTKP+SDLGFL SQLSGI+ISSNHSLISPS IS APLRPSLQP+ARRICPFTGKKANKKNLVSFSNHKTKKL
Subjt:  MAASVVFGFTPAATCSGVMTTSSTKLHFRTKPSSDLGFLTSQLSGIRISSNHSLISPSSISTAPLRPSLQPVARRICPFTGKKANKKNLVSFSNHKTKKL

Query:  QFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
        QFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
Subjt:  QFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE

XP_022979375.1 50S ribosomal protein L28, chloroplastic [Cucurbita maxima]4.44e-8087.33Show/hide
Query:  MAASVVFGFTPAATCSGVMTTSSTKLHFRTKPSSDLGFLTSQLSGIRISSNHSLISPSSISTAPLRPSLQPVARRICPFTGKKANKKNLVSFSNHKTKKL
        MA S V GFTP ++ SGVM  SS+KLHFRTKP+ +LGFL+SQLSGI+ISSNHSLISPS IS APLRP+LQPVARR+CPFTGKKANKKNLVSFSNHKTKKL
Subjt:  MAASVVFGFTPAATCSGVMTTSSTKLHFRTKPSSDLGFLTSQLSGIRISSNHSLISPSSISTAPLRPSLQPVARRICPFTGKKANKKNLVSFSNHKTKKL

Query:  QFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
        QFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
Subjt:  QFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE

XP_023526300.1 50S ribosomal protein L28, chloroplastic [Cucurbita pepo subsp. pepo]2.99e-7886Show/hide
Query:  MAASVVFGFTPAATCSGVMTTSSTKLHFRTKPSSDLGFLTSQLSGIRISSNHSLISPSSISTAPLRPSLQPVARRICPFTGKKANKKNLVSFSNHKTKKL
        MA S V GFTP  + SGVM  SS+KLHFRTKP+ +LGFL+SQLSGI+ISSNHSLIS S IS APLRP+LQPVARR+CPFTGKKAN+KNLVSFSNHKTKKL
Subjt:  MAASVVFGFTPAATCSGVMTTSSTKLHFRTKPSSDLGFLTSQLSGIRISSNHSLISPSSISTAPLRPSLQPVARRICPFTGKKANKKNLVSFSNHKTKKL

Query:  QFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
        QFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
Subjt:  QFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE

XP_038885053.1 50S ribosomal protein L28, chloroplastic [Benincasa hispida]1.09e-8089.33Show/hide
Query:  MAASVVFGFTPAATCSGVMTTSSTKLHFRTKPSSDLGFLTSQLSGIRISSNHSLISPSSISTAPLRPSLQPVARRICPFTGKKANKKNLVSFSNHKTKKL
        MAA VV GFTPA T SGVM  SSTKL F TKP+S+LGFLTSQL+GI+ISSNHSLISPS IS APLRP+LQPVARR+CPFTGKKANKKNLVSFSNHKTKKL
Subjt:  MAASVVFGFTPAATCSGVMTTSSTKLHFRTKPSSDLGFLTSQLSGIRISSNHSLISPSSISTAPLRPSLQPVARRICPFTGKKANKKNLVSFSNHKTKKL

Query:  QFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
        QFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
Subjt:  QFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE

TrEMBL top hitse value%identityAlignment
A0A0A0L501 Uncharacterized protein1.86e-9598.67Show/hide
Query:  MAASVVFGFTPAATCSGVMTTSSTKLHFRTKPSSDLGFLTSQLSGIRISSNHSLISPSSISTAPLRPSLQPVARRICPFTGKKANKKNLVSFSNHKTKKL
        MAASVVFGFTPAATCSGVMTTSSTKLHFRTKP+SDLGFLTSQLSGIRISSNHSLISP+SISTAPLRPSLQPVARRICPFTGKKANKKNLVSFSNHKTKKL
Subjt:  MAASVVFGFTPAATCSGVMTTSSTKLHFRTKPSSDLGFLTSQLSGIRISSNHSLISPSSISTAPLRPSLQPVARRICPFTGKKANKKNLVSFSNHKTKKL

Query:  QFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
        QFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
Subjt:  QFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE

A0A1S3AWK5 50S ribosomal protein L28, chloroplastic4.03e-9094Show/hide
Query:  MAASVVFGFTPAATCSGVMTTSSTKLHFRTKPSSDLGFLTSQLSGIRISSNHSLISPSSISTAPLRPSLQPVARRICPFTGKKANKKNLVSFSNHKTKKL
        MAASVVFGFTPAAT +GVM TSSTKLHFRTKP+SDLGFL SQLSGI+ISSNHSLISPS IS APLRPSLQP+ARRICPFTGKKANKKNLVSFSNHKTKKL
Subjt:  MAASVVFGFTPAATCSGVMTTSSTKLHFRTKPSSDLGFLTSQLSGIRISSNHSLISPSSISTAPLRPSLQPVARRICPFTGKKANKKNLVSFSNHKTKKL

Query:  QFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
        QFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
Subjt:  QFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE

A0A5A7U1W6 50S ribosomal protein L284.03e-9094Show/hide
Query:  MAASVVFGFTPAATCSGVMTTSSTKLHFRTKPSSDLGFLTSQLSGIRISSNHSLISPSSISTAPLRPSLQPVARRICPFTGKKANKKNLVSFSNHKTKKL
        MAASVVFGFTPAAT +GVM TSSTKLHFRTKP+SDLGFL SQLSGI+ISSNHSLISPS IS APLRPSLQP+ARRICPFTGKKANKKNLVSFSNHKTKKL
Subjt:  MAASVVFGFTPAATCSGVMTTSSTKLHFRTKPSSDLGFLTSQLSGIRISSNHSLISPSSISTAPLRPSLQPVARRICPFTGKKANKKNLVSFSNHKTKKL

Query:  QFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
        QFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
Subjt:  QFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE

A0A6J1E916 50S ribosomal protein L28, chloroplastic3.41e-7785.33Show/hide
Query:  MAASVVFGFTPAATCSGVMTTSSTKLHFRTKPSSDLGFLTSQLSGIRISSNHSLISPSSISTAPLRPSLQPVARRICPFTGKKANKKNLVSFSNHKTKKL
        MA S V GFTP  + SGVM  SS+KLHFR+K + +LGFL+SQLSGI+ISSNHSLIS S IS APLRP+LQPVARR+CPFTGKKANKKNLVSFSNHKTKKL
Subjt:  MAASVVFGFTPAATCSGVMTTSSTKLHFRTKPSSDLGFLTSQLSGIRISSNHSLISPSSISTAPLRPSLQPVARRICPFTGKKANKKNLVSFSNHKTKKL

Query:  QFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
        QFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
Subjt:  QFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE

A0A6J1IT28 50S ribosomal protein L28, chloroplastic2.15e-8087.33Show/hide
Query:  MAASVVFGFTPAATCSGVMTTSSTKLHFRTKPSSDLGFLTSQLSGIRISSNHSLISPSSISTAPLRPSLQPVARRICPFTGKKANKKNLVSFSNHKTKKL
        MA S V GFTP ++ SGVM  SS+KLHFRTKP+ +LGFL+SQLSGI+ISSNHSLISPS IS APLRP+LQPVARR+CPFTGKKANKKNLVSFSNHKTKKL
Subjt:  MAASVVFGFTPAATCSGVMTTSSTKLHFRTKPSSDLGFLTSQLSGIRISSNHSLISPSSISTAPLRPSLQPVARRICPFTGKKANKKNLVSFSNHKTKKL

Query:  QFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
        QFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
Subjt:  QFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE

SwissProt top hitse value%identityAlignment
B8HUV7 50S ribosomal protein L288.3e-2062.67Show/hide
Query:  RICPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRK
        R+C  TGK+AN    VS S+ +TKKLQ VNLQ+K++WW  GKR+V+LRLSTKALKT+E  GLD+ A++AGIDL K
Subjt:  RICPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRK

O22795 50S ribosomal protein L28, chloroplastic9.1e-4372.06Show/hide
Query:  MTTSSTKLHFRTKPSSDLGFLTSQLSGIRISSNHSLISPSSI---STAPLRPSLQP-VARRICPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEA
        MT+S+  +   T  S +LGFLTSQLSG+RIS      +PS +    + P  P +QP VARRICPFTGKKAN+ N VSFSNHKTKKLQFVNLQYK+VWWEA
Subjt:  MTTSSTKLHFRTKPSSDLGFLTSQLSGIRISSNHSLISPSSI---STAPLRPSLQP-VARRICPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEA

Query:  GKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
        GKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRK+
Subjt:  GKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE

P30956 50S ribosomal protein L28, chloroplastic2.8e-4475.41Show/hide
Query:  RTKPSSDLGFLTSQLSGIRISSNHSLISPSSISTAPLRPSLQPVARRICPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVKLRLSTKAL
        ++K SS+L F+TSQLSG++ISS H  IS S+  + P +PSLQPVARRICPFTGKK+N+ N VS SNHKTKKLQFVNLQYK++WWEAGKR+VKLRLSTKA+
Subjt:  RTKPSSDLGFLTSQLSGIRISSNHSLISPSSISTAPLRPSLQPVARRICPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVKLRLSTKAL

Query:  KTIEKNGLDAVAKKAGIDLRKE
        KTIEKNGLDAVAKKAGIDL K+
Subjt:  KTIEKNGLDAVAKKAGIDLRKE

P82245 50S ribosomal protein L28, chloroplastic7.5e-4570.34Show/hide
Query:  SGVMTTSSTKLHFR-------TKPS---SDLGFLTSQLSGIRISSNHSLISPSSISTAPLRPSLQPVARRICPFTGKKANKKNLVSFSNHKTKKLQFVNL
        SG++ ++ + + FR        KP    S+LGFLTSQLSGI+IS +      S   +APL+PSLQPVARRICPFTGKK+NK N VS SNHKTK+LQFVNL
Subjt:  SGVMTTSSTKLHFR-------TKPS---SDLGFLTSQLSGIRISSNHSLISPSSISTAPLRPSLQPVARRICPFTGKKANKKNLVSFSNHKTKKLQFVNL

Query:  QYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
        QYK+VWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
Subjt:  QYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE

Q8DG62 50S ribosomal protein L284.9e-2062.67Show/hide
Query:  RICPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRK
        R+C  TGKKAN    +S S+ +TKKLQ VNLQ+K+VWW  GKR+V+LRLSTKA+KT+E+ GL A AK+AG+DL K
Subjt:  RICPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRK

Arabidopsis top hitse value%identityAlignment
AT2G33450.1 Ribosomal L28 family6.5e-4472.06Show/hide
Query:  MTTSSTKLHFRTKPSSDLGFLTSQLSGIRISSNHSLISPSSI---STAPLRPSLQP-VARRICPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEA
        MT+S+  +   T  S +LGFLTSQLSG+RIS      +PS +    + P  P +QP VARRICPFTGKKAN+ N VSFSNHKTKKLQFVNLQYK+VWWEA
Subjt:  MTTSSTKLHFRTKPSSDLGFLTSQLSGIRISSNHSLISPSSI---STAPLRPSLQP-VARRICPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEA

Query:  GKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
        GKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRK+
Subjt:  GKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAGCTTCTGTTGTCTTTGGCTTCACGCCGGCGGCCACTTGTTCCGGTGTAATGACAACCTCCTCAACCAAACTTCACTTCAGAACTAAACCCAGTTCCGATCTAGG
GTTCCTCACTTCTCAATTGAGCGGCATCAGAATCTCCTCCAACCACTCACTCATCTCCCCCTCTTCCATTTCTACTGCTCCTCTCAGGCCTTCCCTTCAACCTGTTGCTC
GTAGAATTTGTCCATTTACTGGAAAGAAAGCAAATAAGAAGAACTTAGTTTCTTTCTCCAACCACAAGACCAAGAAATTGCAGTTTGTGAATCTTCAATACAAGAAGGTT
TGGTGGGAAGCTGGTAAGCGTTTTGTGAAATTACGTTTGTCAACTAAGGCTTTGAAGACTATTGAGAAGAATGGACTTGATGCTGTGGCTAAGAAGGCTGGAATTGATCT
TCGTAAAGAATGA
mRNA sequenceShow/hide mRNA sequence
ATGGCAGCTTCTGTTGTCTTTGGCTTCACGCCGGCGGCCACTTGTTCCGGTGTAATGACAACCTCCTCAACCAAACTTCACTTCAGAACTAAACCCAGTTCCGATCTAGG
GTTCCTCACTTCTCAATTGAGCGGCATCAGAATCTCCTCCAACCACTCACTCATCTCCCCCTCTTCCATTTCTACTGCTCCTCTCAGGCCTTCCCTTCAACCTGTTGCTC
GTAGAATTTGTCCATTTACTGGAAAGAAAGCAAATAAGAAGAACTTAGTTTCTTTCTCCAACCACAAGACCAAGAAATTGCAGTTTGTGAATCTTCAATACAAGAAGGTT
TGGTGGGAAGCTGGTAAGCGTTTTGTGAAATTACGTTTGTCAACTAAGGCTTTGAAGACTATTGAGAAGAATGGACTTGATGCTGTGGCTAAGAAGGCTGGAATTGATCT
TCGTAAAGAATGA
Protein sequenceShow/hide protein sequence
MAASVVFGFTPAATCSGVMTTSSTKLHFRTKPSSDLGFLTSQLSGIRISSNHSLISPSSISTAPLRPSLQPVARRICPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKV
WWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE