; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cucsat.G11848 (gene) of Cucumber (B10) v3 genome

Gene IDCucsat.G11848
OrganismCucumis sativus L. var. sativus cv. B10 (Cucumber (B10) v3)
Description30S ribosomal protein S17, chloroplastic
Genome locationctg1820:998846..1003574
RNA-Seq ExpressionCucsat.G11848
SyntenyCucsat.G11848
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005840 - ribosome (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0019843 - rRNA binding (molecular function)
InterPro domainsIPR000266 - Ribosomal protein S17/S11
IPR012340 - Nucleic acid-binding, OB-fold
IPR019984 - 30S ribosomal protein S17


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0041013.1 30S ribosomal protein S17-like [Cucumis melo var. makuwa]9.78e-6795.45Show/hide
Query:  VFNRWTKMKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKHWVVAEILRKARIYEPPSQDKQSVSD
        VFNR  KMKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSK KHWVVAEILRKARIYEPPSQD Q+VSD
Subjt:  VFNRWTKMKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKHWVVAEILRKARIYEPPSQDKQSVSD

Query:  KSNVSAPSTT
        KSNVSAPSTT
Subjt:  KSNVSAPSTT

KAE8649314.1 hypothetical protein Csa_015070 [Cucumis sativus]2.67e-7993.75Show/hide
Query:  IGVWQARKTAASSLEGFRVFNRWTKMKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKHWVVAEIL
        +G +   + AASSLEGFRVFNRWTKMKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKHWVVAEIL
Subjt:  IGVWQARKTAASSLEGFRVFNRWTKMKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKHWVVAEIL

Query:  RKARIYEPPSQDKQSVSDKSNVSAPSTT
        RKARIYEPPSQDKQSVSDKSNVSAPSTT
Subjt:  RKARIYEPPSQDKQSVSDKSNVSAPSTT

TYK20371.1 30S ribosomal protein S17-like [Cucumis melo var. makuwa]9.78e-6795.45Show/hide
Query:  VFNRWTKMKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKHWVVAEILRKARIYEPPSQDKQSVSD
        VFNR  KMKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSK KHWVVAEILRKARIYEPPSQD Q+VSD
Subjt:  VFNRWTKMKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKHWVVAEILRKARIYEPPSQDKQSVSD

Query:  KSNVSAPSTT
        KSNVSAPSTT
Subjt:  KSNVSAPSTT

XP_004137152.1 uncharacterized protein LOC101211400 [Cucumis sativus]2.24e-66100Show/hide
Query:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKHWVVAEILRKARIYEPPSQDKQSVSDKSNVSAP
        MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKHWVVAEILRKARIYEPPSQDKQSVSDKSNVSAP
Subjt:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKHWVVAEILRKARIYEPPSQDKQSVSDKSNVSAP

Query:  STT
        STT
Subjt:  STT

XP_016903240.1 PREDICTED: 30S ribosomal protein S17-like [Cucumis melo]6.15e-6497.09Show/hide
Query:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKHWVVAEILRKARIYEPPSQDKQSVSDKSNVSAP
        MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSK KHWVVAEILRKARIYEPPSQD Q+VSDKSNVSAP
Subjt:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKHWVVAEILRKARIYEPPSQDKQSVSDKSNVSAP

Query:  STT
        STT
Subjt:  STT

TrEMBL top hitse value%identityAlignment
A0A1S4E5I9 30S ribosomal protein S17, chloroplastic2.98e-6497.09Show/hide
Query:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKHWVVAEILRKARIYEPPSQDKQSVSDKSNVSAP
        MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSK KHWVVAEILRKARIYEPPSQD Q+VSDKSNVSAP
Subjt:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKHWVVAEILRKARIYEPPSQDKQSVSDKSNVSAP

Query:  STT
        STT
Subjt:  STT

A0A5A7TD01 30S ribosomal protein S17, chloroplastic4.74e-6795.45Show/hide
Query:  VFNRWTKMKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKHWVVAEILRKARIYEPPSQDKQSVSD
        VFNR  KMKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSK KHWVVAEILRKARIYEPPSQD Q+VSD
Subjt:  VFNRWTKMKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKHWVVAEILRKARIYEPPSQDKQSVSD

Query:  KSNVSAPSTT
        KSNVSAPSTT
Subjt:  KSNVSAPSTT

A0A5D3D9X1 30S ribosomal protein S17, chloroplastic4.74e-6795.45Show/hide
Query:  VFNRWTKMKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKHWVVAEILRKARIYEPPSQDKQSVSD
        VFNR  KMKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSK KHWVVAEILRKARIYEPPSQD Q+VSD
Subjt:  VFNRWTKMKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKHWVVAEILRKARIYEPPSQDKQSVSD

Query:  KSNVSAPSTT
        KSNVSAPSTT
Subjt:  KSNVSAPSTT

A0A6J1FRT9 30S ribosomal protein S17, chloroplastic3.32e-6193.2Show/hide
Query:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKHWVVAEILRKARIYEPPSQDKQSVSDKSNVSAP
        MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHK WVVAEILRKARIY+PPSQ+ Q VSDK  VSAP
Subjt:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKHWVVAEILRKARIYEPPSQDKQSVSDKSNVSAP

Query:  STT
        STT
Subjt:  STT

A0A6J1JP01 30S ribosomal protein S17, chloroplastic1.16e-6194.17Show/hide
Query:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKHWVVAEILRKARIYEPPSQDKQSVSDKSNVSAP
        MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHK WVVAEILRKARIYEPPSQ+ Q VSDK  VSAP
Subjt:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKHWVVAEILRKARIYEPPSQDKQSVSDKSNVSAP

Query:  STT
        STT
Subjt:  STT

SwissProt top hitse value%identityAlignment
A7HM43 30S ribosomal protein S174.9e-2055.42Show/hide
Query:  KQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKHWVVAEILRKARIYEPP
        K++VG+VVS+KM K+V V V+RL  H  + +YVKRT KF AHDENN C +GD V+++ SRPLSK K WVV  IL ++++ E P
Subjt:  KQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKHWVVAEILRKARIYEPP

B1I1J7 30S ribosomal protein S177.6e-2164Show/hide
Query:  GMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKHWVVAEILRKARI
        G VVS+KM K+VVVAVD L  H LY R V+RT KFMAHDE+NQC IGD+VK+  +RPLS+HK W VAE+L +++I
Subjt:  GMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKHWVVAEILRKARI

Q1LTC9 30S ribosomal protein S171.6e-1854.79Show/hide
Query:  GMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKHWVVAEILRKA
        G VVSNKM KS+VVA++R+  H +Y +Y+KRT+K  AHDENN CNIGD +++   RP+SK K W++  I+ KA
Subjt:  GMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKHWVVAEILRKA

Q6LVA7 30S ribosomal protein S179.3e-1952.63Show/hide
Query:  VGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKHWVVAEILRKARI
        +G V+S+KM KS+VVA++R+  H +Y +Y+KRT+K  AHDENN+CN+GD V++   RPLSK K W +  I+ KAR+
Subjt:  VGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKHWVVAEILRKARI

Q8R7W3 30S ribosomal protein S179.3e-1958.11Show/hide
Query:  VGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKHWVVAEILRKA
        +G VVSNKMQK++VVAV+  F H LY + VKRT K+  HDENN CN+GD VK+  +RPLSK K W + E+++KA
Subjt:  VGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKHWVVAEILRKA

Arabidopsis top hitse value%identityAlignment
AT1G49400.1 Nucleic acid-binding, OB-fold-like protein8.6e-3671.84Show/hide
Query:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKHWVVAEILRKARIYEPPSQDKQSVSDKSNVSAP
        MK V+G VVSNKMQKSVVVAVDRLF++K+YNRYVKRTSKFMAHD+ + CNIGDRVKLDPSRPLSK+KHW+VAEI++KARIY P +    +VS  ++ S+ 
Subjt:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKHWVVAEILRKARIYEPPSQDKQSVSDKSNVSAP

Query:  STT
        STT
Subjt:  STT

AT1G79850.1 ribosomal protein S174.7e-1042.31Show/hide
Query:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKHWVVAEILRKA
        MK + G VV     K+V V V RL  H  Y R V+   K+ AHD +NQ  +GD V+L+ SRP+SK K +V   ++ +A
Subjt:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKHWVVAEILRKA

AT3G18880.1 Nucleic acid-binding, OB-fold-like protein7.3e-3580.72Show/hide
Query:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKHWVVAEILRKARIYEP
        MK V+G VVSNKMQ SVVVAVDRLF++ +YNRYVKRTSKFMAHDE + CNIGDRVKLDPSRPLSKHKHW+V+EI++KARIY P
Subjt:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKHWVVAEILRKARIYEP

AT4G30800.1 Nucleic acid-binding, OB-fold-like protein2.3e-0431.68Show/hide
Query:  KTAASSLEGFRVFNR--WTKMKQVVGMVVSN-----KMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAH-DENNQCNIGDRVKLDPSRPLSKHKHWVVAEI
        KT   ++EG  +  +  +T    + G ++S      KMQ++++V  D L + K Y RY KR S   AH     +   GDRV +   RPLSK   + V ++
Subjt:  KTAASSLEGFRVFNR--WTKMKQVVGMVVSN-----KMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAH-DENNQCNIGDRVKLDPSRPLSKHKHWVVAEI

Query:  L
        +
Subjt:  L


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTTTTTCTAAACTTTAACTGGCGATGGAAGATTATCAGGACTTTGTTTTTGGTTGGCCATTTGACCATTGGTGTGTGGCAGGCAAGAAAAACTGCAGCTTCAAGTTT
AGAAGGGTTTAGGGTTTTCAATCGCTGGACCAAGATGAAGCAAGTAGTGGGGATGGTGGTCTCAAACAAAATGCAGAAATCAGTTGTCGTTGCAGTGGACAGATTGTTTT
ATCACAAGCTCTATAATCGCTACGTTAAACGCACTTCCAAGTTCATGGCTCATGATGAGAACAATCAATGCAATATTGGTGATAGGGTTAAATTAGATCCTTCGAGGCCA
TTGAGCAAGCATAAACATTGGGTGGTTGCTGAAATTTTGAGGAAAGCAAGAATTTACGAGCCACCATCACAAGATAAACAGTCTGTTTCAGACAAAAGCAATGTTTCAGC
TCCTTCAACCACTTAA
mRNA sequenceShow/hide mRNA sequence
ATGTTTTTTCTAAACTTTAACTGGCGATGGAAGATTATCAGGACTTTGTTTTTGGTTGGCCATTTGACCATTGGTGTGTGGCAGGCAAGAAAAACTGCAGCTTCAAGTTT
AGAAGGGTTTAGGGTTTTCAATCGCTGGACCAAGATGAAGCAAGTAGTGGGGATGGTGGTCTCAAACAAAATGCAGAAATCAGTTGTCGTTGCAGTGGACAGATTGTTTT
ATCACAAGCTCTATAATCGCTACGTTAAACGCACTTCCAAGTTCATGGCTCATGATGAGAACAATCAATGCAATATTGGTGATAGGGTTAAATTAGATCCTTCGAGGCCA
TTGAGCAAGCATAAACATTGGGTGGTTGCTGAAATTTTGAGGAAAGCAAGAATTTACGAGCCACCATCACAAGATAAACAGTCTGTTTCAGACAAAAGCAATGTTTCAGC
TCCTTCAACCACTTAA
Protein sequenceShow/hide protein sequence
MFFLNFNWRWKIIRTLFLVGHLTIGVWQARKTAASSLEGFRVFNRWTKMKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRP
LSKHKHWVVAEILRKARIYEPPSQDKQSVSDKSNVSAPSTT