CuGenDBv2

Gene ID	Cucsat.G11876
Organism	Cucumis sativus L. var. sativus cv. B10 (Cucumber (B10) v3)
Description	50S ribosomal protein L23
Genome location	ctg1820:2171040..2172482
RNA-Seq Expression	Cucsat.G11876
Synteny	Cucsat.G11876
Gene Ontology terms	GO:0032543 - mitochondrial translation (biological process) GO:0005762 - mitochondrial large ribosomal subunit (cellular component) GO:0003729 - mRNA binding (molecular function) GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domains	IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily IPR012678 - Ribosomal protein L23/L15e core domain superfamily IPR013025 - Ribosomal protein L25/L23

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0053397.1 Nucleotide-binding, alpha-beta plait [Cucumis melo var. makuwa]

2.70e-110

96.51

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Query:  MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVQTLNMEGKKKKRGGILIAKPDYKKAYVTLRNPLSISPDMYP
        MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKT PSASKIEIKRVLESLYGF+VDKV+TLNMEGKKKKRGGILIAKPDYKKAYVTLRNPLSIS DMYP
Subjt:  MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVQTLNMEGKKKKRGGILIAKPDYKKAYVTLRNPLSISPDMYP

Query:  IRIIEEDKRNMNKQSKSSIVEEGEAKKHWLHEKEPVGIKTYKGFADRGRRRSGGGAETVEPSTKFPWSSMRS
        IRIIEEDKRNMNKQSKSSIVEEGEAK+HWLHEKEPVGIKTYKGFADRGRRR GGGAETVEPSTKFPWSSMRS
Subjt:  IRIIEEDKRNMNKQSKSSIVEEGEAKKHWLHEKEPVGIKTYKGFADRGRRRSGGGAETVEPSTKFPWSSMRS

TYK15876.1 Nucleotide-binding, alpha-beta plait [Cucumis melo var. makuwa]

4.68e-111

97.09

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Query:  MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVQTLNMEGKKKKRGGILIAKPDYKKAYVTLRNPLSISPDMYP
        MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGF+VDKV+TLNMEGKKKKRGGILIAKPDYKKAYVTLRNPLSIS DMYP
Subjt:  MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVQTLNMEGKKKKRGGILIAKPDYKKAYVTLRNPLSISPDMYP

Query:  IRIIEEDKRNMNKQSKSSIVEEGEAKKHWLHEKEPVGIKTYKGFADRGRRRSGGGAETVEPSTKFPWSSMRS
        IRIIEEDKRNMNKQSKSSIVEEGEAK+HWLHEKEPVGIKTYKGFADRGRRR GGGAETVEPSTKFPWSSMRS
Subjt:  IRIIEEDKRNMNKQSKSSIVEEGEAKKHWLHEKEPVGIKTYKGFADRGRRRSGGGAETVEPSTKFPWSSMRS

XP_004137193.1 uncharacterized protein LOC101221365 [Cucumis sativus]

7.51e-116

100

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Query:  MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVQTLNMEGKKKKRGGILIAKPDYKKAYVTLRNPLSISPDMYP
        MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVQTLNMEGKKKKRGGILIAKPDYKKAYVTLRNPLSISPDMYP
Subjt:  MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVQTLNMEGKKKKRGGILIAKPDYKKAYVTLRNPLSISPDMYP

Query:  IRIIEEDKRNMNKQSKSSIVEEGEAKKHWLHEKEPVGIKTYKGFADRGRRRSGGGAETVEPSTKFPWSSMRS
        IRIIEEDKRNMNKQSKSSIVEEGEAKKHWLHEKEPVGIKTYKGFADRGRRRSGGGAETVEPSTKFPWSSMRS
Subjt:  IRIIEEDKRNMNKQSKSSIVEEGEAKKHWLHEKEPVGIKTYKGFADRGRRRSGGGAETVEPSTKFPWSSMRS

XP_008455593.1 PREDICTED: uncharacterized protein LOC103495731 isoform X1 [Cucumis melo]

3.42e-112

97.09

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Query:  MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVQTLNMEGKKKKRGGILIAKPDYKKAYVTLRNPLSISPDMYP
        MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGF+VDKV+TLNMEGKKKKRGGILIAKPDYKKAYVTLRNPLSIS DMYP
Subjt:  MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVQTLNMEGKKKKRGGILIAKPDYKKAYVTLRNPLSISPDMYP

Query:  IRIIEEDKRNMNKQSKSSIVEEGEAKKHWLHEKEPVGIKTYKGFADRGRRRSGGGAETVEPSTKFPWSSMRS
        IRIIEEDKRNMNKQSKSSIVEEGEAK+HWLHEKEPVGIKTYKGFADRGRRR GGGAETVEPSTKFPWSSMRS
Subjt:  IRIIEEDKRNMNKQSKSSIVEEGEAKKHWLHEKEPVGIKTYKGFADRGRRRSGGGAETVEPSTKFPWSSMRS

XP_016901794.1 PREDICTED: uncharacterized protein LOC103495731 isoform X2 [Cucumis melo]

3.42e-112

97.09

Show/hide

Query:  MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVQTLNMEGKKKKRGGILIAKPDYKKAYVTLRNPLSISPDMYP
        MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGF+VDKV+TLNMEGKKKKRGGILIAKPDYKKAYVTLRNPLSIS DMYP
Subjt:  MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVQTLNMEGKKKKRGGILIAKPDYKKAYVTLRNPLSISPDMYP

Query:  IRIIEEDKRNMNKQSKSSIVEEGEAKKHWLHEKEPVGIKTYKGFADRGRRRSGGGAETVEPSTKFPWSSMRS
        IRIIEEDKRNMNKQSKSSIVEEGEAK+HWLHEKEPVGIKTYKGFADRGRRR GGGAETVEPSTKFPWSSMRS
Subjt:  IRIIEEDKRNMNKQSKSSIVEEGEAKKHWLHEKEPVGIKTYKGFADRGRRRSGGGAETVEPSTKFPWSSMRS

TrEMBL top hits

e value

%identity

Alignment

A0A0A0L0J2 Uncharacterized protein

3.63e-116

100

Show/hide

Query:  MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVQTLNMEGKKKKRGGILIAKPDYKKAYVTLRNPLSISPDMYP
        MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVQTLNMEGKKKKRGGILIAKPDYKKAYVTLRNPLSISPDMYP
Subjt:  MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVQTLNMEGKKKKRGGILIAKPDYKKAYVTLRNPLSISPDMYP

Query:  IRIIEEDKRNMNKQSKSSIVEEGEAKKHWLHEKEPVGIKTYKGFADRGRRRSGGGAETVEPSTKFPWSSMRS
        IRIIEEDKRNMNKQSKSSIVEEGEAKKHWLHEKEPVGIKTYKGFADRGRRRSGGGAETVEPSTKFPWSSMRS
Subjt:  IRIIEEDKRNMNKQSKSSIVEEGEAKKHWLHEKEPVGIKTYKGFADRGRRRSGGGAETVEPSTKFPWSSMRS

A0A1S3C191 uncharacterized protein LOC103495731 isoform X1

1.66e-112

97.09

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Query:  MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVQTLNMEGKKKKRGGILIAKPDYKKAYVTLRNPLSISPDMYP
        MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGF+VDKV+TLNMEGKKKKRGGILIAKPDYKKAYVTLRNPLSIS DMYP
Subjt:  MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVQTLNMEGKKKKRGGILIAKPDYKKAYVTLRNPLSISPDMYP

Query:  IRIIEEDKRNMNKQSKSSIVEEGEAKKHWLHEKEPVGIKTYKGFADRGRRRSGGGAETVEPSTKFPWSSMRS
        IRIIEEDKRNMNKQSKSSIVEEGEAK+HWLHEKEPVGIKTYKGFADRGRRR GGGAETVEPSTKFPWSSMRS
Subjt:  IRIIEEDKRNMNKQSKSSIVEEGEAKKHWLHEKEPVGIKTYKGFADRGRRRSGGGAETVEPSTKFPWSSMRS

A0A1S4E0P8 uncharacterized protein LOC103495731 isoform X2

1.66e-112

97.09

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Query:  MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVQTLNMEGKKKKRGGILIAKPDYKKAYVTLRNPLSISPDMYP
        MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGF+VDKV+TLNMEGKKKKRGGILIAKPDYKKAYVTLRNPLSIS DMYP
Subjt:  MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVQTLNMEGKKKKRGGILIAKPDYKKAYVTLRNPLSISPDMYP

Query:  IRIIEEDKRNMNKQSKSSIVEEGEAKKHWLHEKEPVGIKTYKGFADRGRRRSGGGAETVEPSTKFPWSSMRS
        IRIIEEDKRNMNKQSKSSIVEEGEAK+HWLHEKEPVGIKTYKGFADRGRRR GGGAETVEPSTKFPWSSMRS
Subjt:  IRIIEEDKRNMNKQSKSSIVEEGEAKKHWLHEKEPVGIKTYKGFADRGRRRSGGGAETVEPSTKFPWSSMRS

A0A5A7UFX6 Nucleotide-binding, alpha-beta plait

1.31e-110

96.51

Show/hide

Query:  MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVQTLNMEGKKKKRGGILIAKPDYKKAYVTLRNPLSISPDMYP
        MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKT PSASKIEIKRVLESLYGF+VDKV+TLNMEGKKKKRGGILIAKPDYKKAYVTLRNPLSIS DMYP
Subjt:  MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVQTLNMEGKKKKRGGILIAKPDYKKAYVTLRNPLSISPDMYP

Query:  IRIIEEDKRNMNKQSKSSIVEEGEAKKHWLHEKEPVGIKTYKGFADRGRRRSGGGAETVEPSTKFPWSSMRS
        IRIIEEDKRNMNKQSKSSIVEEGEAK+HWLHEKEPVGIKTYKGFADRGRRR GGGAETVEPSTKFPWSSMRS
Subjt:  IRIIEEDKRNMNKQSKSSIVEEGEAKKHWLHEKEPVGIKTYKGFADRGRRRSGGGAETVEPSTKFPWSSMRS

A0A5D3CZJ7 Nucleotide-binding, alpha-beta plait

2.26e-111

97.09

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Query:  MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVQTLNMEGKKKKRGGILIAKPDYKKAYVTLRNPLSISPDMYP
        MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGF+VDKV+TLNMEGKKKKRGGILIAKPDYKKAYVTLRNPLSIS DMYP
Subjt:  MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVQTLNMEGKKKKRGGILIAKPDYKKAYVTLRNPLSISPDMYP

Query:  IRIIEEDKRNMNKQSKSSIVEEGEAKKHWLHEKEPVGIKTYKGFADRGRRRSGGGAETVEPSTKFPWSSMRS
        IRIIEEDKRNMNKQSKSSIVEEGEAK+HWLHEKEPVGIKTYKGFADRGRRR GGGAETVEPSTKFPWSSMRS
Subjt:  IRIIEEDKRNMNKQSKSSIVEEGEAKKHWLHEKEPVGIKTYKGFADRGRRRSGGGAETVEPSTKFPWSSMRS

SwissProt top hits

e value

%identity

Alignment

A0KF23 50S ribosomal protein L23

6.4e-06

44.07

Show/hide

Query:  IALKTIPSASKIEIKRVLESLYGFEVDKVQTLNMEGKKKKRGGILIAKPDYKKAYVTLR
        I  K    A+K E+K  +  L+  EV+ V+TLNM+GK K+ G  +  + D+KKAYVTL+
Subjt:  IALKTIPSASKIEIKRVLESLYGFEVDKVQTLNMEGKKKKRGGILIAKPDYKKAYVTLR

A4ST04 50S ribosomal protein L23

8.4e-06

44.07

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Query:  IALKTIPSASKIEIKRVLESLYGFEVDKVQTLNMEGKKKKRGGILIAKPDYKKAYVTLR
        I  K    A+K E+K  +  L+  EV+ V+TLNM+GK K+ G  +  + D+KKAYVTL+
Subjt:  IALKTIPSASKIEIKRVLESLYGFEVDKVQTLNMEGKKKKRGGILIAKPDYKKAYVTLR

Q0ABH3 50S ribosomal protein L23

8.4e-06

42.37

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Query:  EIALKTIPSASKIEIKRVLESLYGFEVDKVQTLNMEGKKKKRGGILIAKPDYKKAYVTL
        E+  K    A K EI++ +E L+  +V  V+T+ M+GK+K+ G +   +PD+KKAYVTL
Subjt:  EIALKTIPSASKIEIKRVLESLYGFEVDKVQTLNMEGKKKKRGGILIAKPDYKKAYVTL

Q0I161 50S ribosomal protein L23

4.9e-06

41.1

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Query:  TNITE----IALKTIPSASKIEIKRVLESLYGFEVDKVQTLNMEGKKKKRGGILIAKPDYKKAYVTLRNPLSI
        TN TE    I  K    A+K+EI   +E L+  +VD V+T+ ++GK K+RG  +  + D+KKAYVTL+   S+
Subjt:  TNITE----IALKTIPSASKIEIKRVLESLYGFEVDKVQTLNMEGKKKKRGGILIAKPDYKKAYVTLRNPLSI

Q605B4 50S ribosomal protein L23

2.2e-06

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Query:  EIALKTIPSASKIEIKRVLESLYGFEVDKVQTLNMEGKKKKRGGILIAKPDYKKAYVTLR
        +   +  P+ASK++IK  +E ++G +VD V+ LN++GK K+ G  +  + D+KKAYV L+
Subjt:  EIALKTIPSASKIEIKRVLESLYGFEVDKVQTLNMEGKKKKRGGILIAKPDYKKAYVTLR

Arabidopsis top hits

e value

%identity

Alignment

AT4G39880.1 Ribosomal protein L23/L15e family protein

8.5e-54

65.14

Show/hide

Query:  MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVQTLNMEGKKKKRGGILIAKPDYKKAYVTLRNPLSISPDMYP
        MGSRLG RVVHFANLPIKLLMP   TNI E ALKTIPSASKIEIKRVLESLYGF+V+KV TLNM+GKKKKRGG+LIAK DYKKAYVTLR+PLSIS D++P
Subjt:  MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVQTLNMEGKKKKRGGILIAKPDYKKAYVTLRNPLSISPDMYP

Query:  IRIIEEDKRNMNKQSKSSIVEEGEAKKHWLHEKEPVGIKTY-KGFADRGRRRSGG---GAETVEPSTKFPWSSMR
        ++ IEED+++  K S S + EE + K HWL  KE   I  Y KG   RG  R+     G      + KFPWS+MR
Subjt:  IRIIEEDKRNMNKQSKSSIVEEGEAKKHWLHEKEPVGIKTY-KGFADRGRRRSGG---GAETVEPSTKFPWSSMR

Sequences

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CDS sequence

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ATGGGAAGCAGACTCGGGAGAAGAGTTGTTCACTTCGCAAATCTTCCAATCAAGCTTCTTATGCCTACCTCTTTTACCAACATCACTGAAATTGCTCTTAAAACCATTCC
TTCTGCTTCCAAAATTGAAATCAAGCGCGTCCTTGAGAGCCTTTACGGCTTTGAGGTCGATAAAGTTCAAACTCTTAACATGGAGGGGAAGAAAAAGAAGCGTGGAGGGA
TCTTGATCGCAAAGCCTGATTACAAGAAGGCCTATGTTACTCTCAGAAATCCCTTGTCAATATCTCCGGACATGTACCCGATCCGCATTATAGAGGAGGATAAGAGGAAT
ATGAACAAGCAGTCTAAGTCCAGCATTGTTGAGGAGGGCGAGGCAAAGAAGCATTGGCTGCATGAGAAAGAGCCTGTGGGAATCAAAACTTACAAGGGTTTTGCTGATAG
AGGCCGCCGACGAAGTGGCGGTGGCGCTGAAACGGTTGAGCCATCAACTAAATTTCCTTGGAGTAGCATGAGGTCATTGATAATCTACGTCTTAAGCTTATTCGAGAACT
AG

mRNA sequence

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Protein sequence

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MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVQTLNMEGKKKKRGGILIAKPDYKKAYVTLRNPLSISPDMYPIRIIEEDKRN
MNKQSKSSIVEEGEAKKHWLHEKEPVGIKTYKGFADRGRRRSGGGAETVEPSTKFPWSSMRSLIIYVLSLFEN

Cucsat.G11876 (gene) of Cucumber (B10) v3 genome