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Cucsat.G12034 (gene) of Cucumber (B10) v3 genome

Gene IDCucsat.G12034
OrganismCucumis sativus L. var. sativus cv. B10 (Cucumber (B10) v3)
DescriptionTy3-gypsy retrotransposon protein
Genome locationctg1820:3199809..3201390
RNA-Seq ExpressionCucsat.G12034
SyntenyCucsat.G12034
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0040209.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]7.45e-4268.14Show/hide
Query:  MDKGLCFRCNEKYSPSHRCKVREKGELMLFILNEEESTGEEASSEGVTEEVVELNQLDIVEATEIELKTIKGFTSKGTMKLRGNVRGKEVVVLIDSRATN
        +D+GL FRCNEKYS  H+CKV+EK +LMLFILNEEEST E   +EG  EE VEL QLDI E  EI+ K I  FTSKGTMKL+G+V+GKEV+VLID  AT+
Subjt:  MDKGLCFRCNEKYSPSHRCKVREKGELMLFILNEEESTGEEASSEGVTEEVVELNQLDIVEATEIELKTIKGFTSKGTMKLRGNVRGKEVVVLIDSRATN

Query:  NFIHEALVEERQI
        NFIH+ALVEE++I
Subjt:  NFIHEALVEERQI
TYK23219.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]6.02e-4266.37Show/hide
Query:  MDKGLCFRCNEKYSPSHRCKVREKGELMLFILNEEESTGEEASSEGVTEEVVELNQLDIVEATEIELKTIKGFTSKGTMKLRGNVRGKEVVVLIDSRATN
        +DKGLCFRCNEKYS  HRCK++EKGELMLFILNEEEST E  S+E      VE+NQL+ +E T IE + I   T+KGTMKLRG V+GKE++VLIDS AT+
Subjt:  MDKGLCFRCNEKYSPSHRCKVREKGELMLFILNEEESTGEEASSEGVTEEVVELNQLDIVEATEIELKTIKGFTSKGTMKLRGNVRGKEVVVLIDSRATN

Query:  NFIHEALVEERQI
        NFIH  LV ER+I
Subjt:  NFIHEALVEERQI
XP_031737605.1 uncharacterized protein LOC116402475 [Cucumis sativus]7.83e-4166.37Show/hide
Query:  MDKGLCFRCNEKYSPSHRCKVREKGELMLFILNEEESTGEEASSEGVTEEVVELNQLDIVEATEIELKTIKGFTSKGTMKLRGNVRGKEVVVLIDSRATN
        +DKGLCFRCNEKYSP HRCK REK ELML ILNEEE    E+++E    E++ELNQL++ E T IEL+ I G TSKGTMKL+G+V GKEVV+LIDS ATN
Subjt:  MDKGLCFRCNEKYSPSHRCKVREKGELMLFILNEEESTGEEASSEGVTEEVVELNQLDIVEATEIELKTIKGFTSKGTMKLRGNVRGKEVVVLIDSRATN

Query:  NFIHEALVEERQI
        NFI + LV+E Q+
Subjt:  NFIHEALVEERQI
XP_031744430.1 uncharacterized protein LOC116405043 [Cucumis sativus]7.62e-4164.04Show/hide
Query:  MDKGLCFRCNEKYSPSHRCKVREKGELMLFILNEEESTGEEASSEGVTEEVVELNQLDIVEATEIELKTIKGFTSKGTMKLRGNVRGKEVVVLIDSRATN
        +DKGLCF+CNEKY+P HRC+V+EK ELMLFI+NEEES  EE   E    E VELN LD  E  EIELKTI G  SKGTMKL+GN++GK V+VLIDS AT+
Subjt:  MDKGLCFRCNEKYSPSHRCKVREKGELMLFILNEEESTGEEASSEGVTEEVVELNQLDIVEATEIELKTIKGFTSKGTMKLRGNVRGKEVVVLIDSRATN

Query:  NFIHEALVEERQIH
        NFIH   V+E+ ++
Subjt:  NFIHEALVEERQIH
XP_031745528.1 uncharacterized protein LOC116405915 [Cucumis sativus]2.36e-4165.45Show/hide
Query:  MDKGLCFRCNEKYSPSHRCKVREKGELMLFILNEEESTGEEASSEGVTEEVVELNQLDIVEATEIELKTIKGFTSKGTMKLRGNVRGKEVVVLIDSRATN
        +DKGLCF+CNE+YSP HRCK+++K ELMLFI+NEEES  +E  +E   EEV+ELNQL + E TEIELK I G TSKGTMK++G ++GKEV++LIDS AT+
Subjt:  MDKGLCFRCNEKYSPSHRCKVREKGELMLFILNEEESTGEEASSEGVTEEVVELNQLDIVEATEIELKTIKGFTSKGTMKLRGNVRGKEVVVLIDSRATN

Query:  NFIHEALVEE
        NFIH  +VEE
Subjt:  NFIHEALVEE
TrEMBL top hitse value%identityAlignment
A0A5A7TG20 Ty3-gypsy retrotransposon protein3.61e-4268.14Show/hide
Query:  MDKGLCFRCNEKYSPSHRCKVREKGELMLFILNEEESTGEEASSEGVTEEVVELNQLDIVEATEIELKTIKGFTSKGTMKLRGNVRGKEVVVLIDSRATN
        +D+GL FRCNEKYS  H+CKV+EK +LMLFILNEEEST E   +EG  EE VEL QLDI E  EI+ K I  FTSKGTMKL+G+V+GKEV+VLID  AT+
Subjt:  MDKGLCFRCNEKYSPSHRCKVREKGELMLFILNEEESTGEEASSEGVTEEVVELNQLDIVEATEIELKTIKGFTSKGTMKLRGNVRGKEVVVLIDSRATN

Query:  NFIHEALVEERQI
        NFIH+ALVEE++I
Subjt:  NFIHEALVEERQI
A0A5A7UB02 Retrotransposon protein1.34e-3964.6Show/hide
Query:  MDKGLCFRCNEKYSPSHRCKVREKGELMLFILNEEESTGEEASSEGVTEEVVELNQLDIVEATEIELKTIKGFTSKGTMKLRGNVRGKEVVVLIDSRATN
        +DKGLCFRCNEKYS  HRCKV+EK ELMLFILNEEE   EE  +    EE VEL QL++ E  EIELKTI   +SKGTMKL+G +  K VVVLIDS AT+
Subjt:  MDKGLCFRCNEKYSPSHRCKVREKGELMLFILNEEESTGEEASSEGVTEEVVELNQLDIVEATEIELKTIKGFTSKGTMKLRGNVRGKEVVVLIDSRATN

Query:  NFIHEALVEERQI
        NFI + +VEER++
Subjt:  NFIHEALVEERQI
A0A5D3BBH7 Ty3/gypsy retrotransposon protein2.04e-3967.26Show/hide
Query:  MDKGLCFRCNEKYSPSHRCKVREKGELMLFILNEEESTGEEASSEGVTEEVVELNQLDIVEATEIELKTIKGFTSKGTMKLRGNVRGKEVVVLIDSRATN
        +DKGLCFRCNEKYS  HRCK++EK ELMLFILNEEEST E   SE    E VE+NQL   E T IE + I   T+KGTMKLRG V+GKEV+VLIDS AT+
Subjt:  MDKGLCFRCNEKYSPSHRCKVREKGELMLFILNEEESTGEEASSEGVTEEVVELNQLDIVEATEIELKTIKGFTSKGTMKLRGNVRGKEVVVLIDSRATN

Query:  NFIHEALVEERQI
        NFIH  LV+ER+I
Subjt:  NFIHEALVEERQI
A0A5D3C7M9 Ty3-gypsy retrotransposon protein3.90e-4167.26Show/hide
Query:  MDKGLCFRCNEKYSPSHRCKVREKGELMLFILNEEESTGEEASSEGVTEEVVELNQLDIVEATEIELKTIKGFTSKGTMKLRGNVRGKEVVVLIDSRATN
        +D+GL FRCNEKYS  H+CKV+EK + MLFILNEEEST E   +EG  EE VEL QLDI E  EI+ K I  FTSKGTMKL+G+V+GKEV+VLID  AT+
Subjt:  MDKGLCFRCNEKYSPSHRCKVREKGELMLFILNEEESTGEEASSEGVTEEVVELNQLDIVEATEIELKTIKGFTSKGTMKLRGNVRGKEVVVLIDSRATN

Query:  NFIHEALVEERQI
        NFIH+ALVEE++I
Subjt:  NFIHEALVEERQI
A0A5D3DJ14 Ty3-gypsy retrotransposon protein2.91e-4266.37Show/hide
Query:  MDKGLCFRCNEKYSPSHRCKVREKGELMLFILNEEESTGEEASSEGVTEEVVELNQLDIVEATEIELKTIKGFTSKGTMKLRGNVRGKEVVVLIDSRATN
        +DKGLCFRCNEKYS  HRCK++EKGELMLFILNEEEST E  S+E      VE+NQL+ +E T IE + I   T+KGTMKLRG V+GKE++VLIDS AT+
Subjt:  MDKGLCFRCNEKYSPSHRCKVREKGELMLFILNEEESTGEEASSEGVTEEVVELNQLDIVEATEIELKTIKGFTSKGTMKLRGNVRGKEVVVLIDSRATN

Query:  NFIHEALVEERQI
        NFIH  LV ER+I
Subjt:  NFIHEALVEERQI
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G30770.1 Eukaryotic aspartyl protease family protein8.5e-0436.59Show/hide
Query:  ELMLFILNEEESTGEEASSEGVTEEVVELNQLDIVEATEIELKTIKGFTSKGTMKLRGNVRGKEVVVLIDSRATNNFIHEAL
        ELM FI+ E  + G     EG+ E+   + Q+     TE        FT    M+  G +   +VVV+IDS ATNNFI + L
Subjt:  ELMLFILNEEESTGEEASSEGVTEEVVELNQLDIVEATEIELKTIKGFTSKGTMKLRGNVRGKEVVVLIDSRATNNFIHEAL

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGACAAAGGGTTGTGCTTTAGGTGCAATGAGAAGTATTCACCGAGCCATAGATGCAAGGTAAGGGAAAAAGGGGAGTTGATGCTCTTCATTCTTAACGAGGAAGAAAG
TACCGGAGAGGAGGCATCTTCGGAAGGAGTGACAGAAGAAGTGGTAGAATTAAATCAATTAGATATAGTTGAGGCAACAGAAATTGAGCTAAAAACCATCAAGGGGTTCA
CCTCCAAAGGAACAATGAAGCTGAGAGGAAATGTGAGAGGGAAAGAGGTAGTGGTCCTTATTGATAGTAGAGCCACTAATAACTTCATACACGAGGCATTAGTTGAGGAA
CGACAGATACATTGA
mRNA sequenceShow/hide mRNA sequence
ATGGACAAAGGGTTGTGCTTTAGGTGCAATGAGAAGTATTCACCGAGCCATAGATGCAAGGTAAGGGAAAAAGGGGAGTTGATGCTCTTCATTCTTAACGAGGAAGAAAG
TACCGGAGAGGAGGCATCTTCGGAAGGAGTGACAGAAGAAGTGGTAGAATTAAATCAATTAGATATAGTTGAGGCAACAGAAATTGAGCTAAAAACCATCAAGGGGTTCA
CCTCCAAAGGAACAATGAAGCTGAGAGGAAATGTGAGAGGGAAAGAGGTAGTGGTCCTTATTGATAGTAGAGCCACTAATAACTTCATACACGAGGCATTAGTTGAGGAA
CGACAGATACATTGA
Protein sequenceShow/hide protein sequence
MDKGLCFRCNEKYSPSHRCKVREKGELMLFILNEEESTGEEASSEGVTEEVVELNQLDIVEATEIELKTIKGFTSKGTMKLRGNVRGKEVVVLIDSRATNNFIHEALVEE
RQIH