; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cucsat.G12057 (gene) of Cucumber (B10) v3 genome

Gene IDCucsat.G12057
OrganismCucumis sativus L. var. sativus cv. B10 (Cucumber (B10) v3)
DescriptionGag-pol polyprotein
Genome locationctg1820:179147..180449
RNA-Seq ExpressionCucsat.G12057
SyntenyCucsat.G12057
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001878 - Zinc finger, CCHC-type
IPR036875 - Zinc finger, CCHC-type superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0033068.1 gag-pol polyprotein [Cucumis melo var. makuwa]2.46e-12683.83Show/hide
Query:  CMQFFRAEQKAESVTSYFMRLKKIIAELGLLLPFSPDVKVQQVQREKMAVMIFLNGLLPEFGMAKTQILSDSKIPSLDDAFTRVLRIESSPTSVSIPQPS
        C++FFRAEQKAESVT+YFMRLKKI A L LLLPFSPDVKVQQ QREKM V IFLNGLLPEFGM K QILSDSKIPSLDDAFTRVLRIESSP  VSIPQ S
Subjt:  CMQFFRAEQKAESVTSYFMRLKKIIAELGLLLPFSPDVKVQQVQREKMAVMIFLNGLLPEFGMAKTQILSDSKIPSLDDAFTRVLRIESSPTSVSIPQPS

Query:  SALFSKNNNPRAP-------QRNSTDHRKPESVEIVCNYCRKPGHMKRDCRKLLYKNSQRSQHAQIASTCDIPEASVTISADEFAKFQNYQESLQASSSS
        SAL SKNNNPRAP       QR S DHRKP S +IVCNYC KPGH+KRDCRKLLYKNSQ+SQHAQIASTCDIPEASVTISADE+ KFQNYQ+ LQASSSS
Subjt:  SALFSKNNNPRAP-------QRNSTDHRKPESVEIVCNYCRKPGHMKRDCRKLLYKNSQRSQHAQIASTCDIPEASVTISADEFAKFQNYQESLQASSSS

Query:  TPIASTVAPGNIKCLLTSSTKWVIDSGATAHMTGS
        TPIASTVAPGN KCLLTSSTKWVIDS AT HMTG+
Subjt:  TPIASTVAPGNIKCLLTSSTKWVIDSGATAHMTGS

TYK30615.1 Copia protein [Cucumis melo var. makuwa]3.88e-9673.28Show/hide
Query:  KEQVHRMFEVCMQFFRAEQKAESVTSYFMRLKKIIAELGLLLPFSPDVKVQQVQREKMAVMIFLNGLLPEFGMAKTQILSDSKIPSLDDAFTRVLRIESS
        KEQVHRMFEVCMQF RAEQKAESVT+YFMRLKKI AEL LLLPFSPDVK Q                          ILSDSKIPSLD+AFTRVLR ESS
Subjt:  KEQVHRMFEVCMQFFRAEQKAESVTSYFMRLKKIIAELGLLLPFSPDVKVQQVQREKMAVMIFLNGLLPEFGMAKTQILSDSKIPSLDDAFTRVLRIESS

Query:  PTSVSIPQPSSALFSKNNNPRAPQR-------NSTDHRKPESVEIVCNYCRKPGHMKRDCRKLLYKNSQRSQHAQIASTCDIPEASVTISADEFAKFQNY
        P  VSIPQ S++L SKNNNPRAP+         S DHRKP+S EIVCNYCRKP H KRDCRKLLYKNSQ+SQHAQIASTCDIPEAS+TISA+E AK QNY
Subjt:  PTSVSIPQPSSALFSKNNNPRAPQR-------NSTDHRKPESVEIVCNYCRKPGHMKRDCRKLLYKNSQRSQHAQIASTCDIPEASVTISADEFAKFQNY

Query:  QESLQASSSSTPIASTVAPGNIKCLLTSSTKW
        Q+SLQASSSSTPIASTV PGN KCLLTSSTKW
Subjt:  QESLQASSSSTPIASTVAPGNIKCLLTSSTKW

XP_031738594.1 uncharacterized protein LOC116402733 isoform X1 [Cucumis sativus]5.65e-12799.47Show/hide
Query:  MAVMIFLNGLLPEFGMAKTQILSDSKIPSLDDAFTRVLRIESSPTSVSIPQPSSALFSKNNNPRAPQRNSTDHRKPESVEIVCNYCRKPGHMKRDCRKLL
        M VMIFLNGLLPEFGMAKTQILSDSKIPSLDDAFTRVLRIESSPTSVSIPQPSSALFSKNNNPRAPQRNSTDHRKPESVEIVCNYCRKPGHMKRDCRKLL
Subjt:  MAVMIFLNGLLPEFGMAKTQILSDSKIPSLDDAFTRVLRIESSPTSVSIPQPSSALFSKNNNPRAPQRNSTDHRKPESVEIVCNYCRKPGHMKRDCRKLL

Query:  YKNSQRSQHAQIASTCDIPEASVTISADEFAKFQNYQESLQASSSSTPIASTVAPGNIKCLLTSSTKWVIDSGATAHMTGSCDEEDYW
        YKNSQRSQHAQIASTCDIPEASVTISADEFAKFQNYQESLQASSSSTPIASTVAPGNIKCLLTSSTKWVIDSGATAHMTGSCDEEDYW
Subjt:  YKNSQRSQHAQIASTCDIPEASVTISADEFAKFQNYQESLQASSSSTPIASTVAPGNIKCLLTSSTKWVIDSGATAHMTGSCDEEDYW

XP_031738595.1 uncharacterized protein LOC116402733 isoform X2 [Cucumis sativus]2.82e-10386.7Show/hide
Query:  MAVMIFLNGLLPEFGMAKTQILSDSKIPSLDDAFTRVLRIESSPTSVSIPQPSSALFSKNNNPRAPQRNSTDHRKPESVEIVCNYCRKPGHMKRDCRKLL
        M VMIFLNGLLPEFGMAKTQILSDSKIPSLDDAFTRVLRIESSPTSVSIPQPSSALFSKNNNPRAPQRNSTDHRKPESVEIVCNYCRKPGHMKRDCRKLL
Subjt:  MAVMIFLNGLLPEFGMAKTQILSDSKIPSLDDAFTRVLRIESSPTSVSIPQPSSALFSKNNNPRAPQRNSTDHRKPESVEIVCNYCRKPGHMKRDCRKLL

Query:  YKNSQRSQHAQIASTCDIPEASVTISADEFAKFQNYQESLQASSSSTPIASTVAPGNIKCLLTSSTKWVIDSGATAHMTGSCDEEDYW
        YKNSQRSQHAQIASTCDIPEASVTISADEFAKFQNYQESLQASSSSTPIASTVAPG                        SCDEEDYW
Subjt:  YKNSQRSQHAQIASTCDIPEASVTISADEFAKFQNYQESLQASSSSTPIASTVAPGNIKCLLTSSTKWVIDSGATAHMTGSCDEEDYW

XP_031744753.1 uncharacterized protein LOC101212255 isoform X1 [Cucumis sativus]2.20e-15299.59Show/hide
Query:  FLYSGKEQVHRMFEVCMQFFRAEQKAESVTSYFMRLKKIIAELGLLLPFSPDVKVQQVQREKMAVMIFLNGLLPEFGMAKTQILSDSKIPSLDDAFTRVL
        FLYSGKEQVHRMFEVCMQFFRAEQKAESVTSYFMRLKKIIAELGLLLPFSPDVKVQQVQREKMAVMIFLNGLLPEFGMAKTQILSDSKIPSLDDAFTRVL
Subjt:  FLYSGKEQVHRMFEVCMQFFRAEQKAESVTSYFMRLKKIIAELGLLLPFSPDVKVQQVQREKMAVMIFLNGLLPEFGMAKTQILSDSKIPSLDDAFTRVL

Query:  RIESSPTSVSIPQPSSALFSKNNNPRAPQRNSTDHRKPESVEIVCNYCRKPGHMKRDCRKLLYKNSQRSQHAQIASTCDIPEASVTISADEFAKFQNYQE
        RIESSPTSVSIPQPSSALFSKNNNPRAPQRNSTDHRKPESVEIVCNYCRKPGHMKRDCRKLLYKNSQRSQHAQIASTCDIPEASVTISADEFAKFQNYQE
Subjt:  RIESSPTSVSIPQPSSALFSKNNNPRAPQRNSTDHRKPESVEIVCNYCRKPGHMKRDCRKLLYKNSQRSQHAQIASTCDIPEASVTISADEFAKFQNYQE

Query:  SLQASSSSTPIASTVAPGNIKCLLTSSTKWVIDSGATAHMTGS
        SLQASSSSTPIASTVAPGNIKCLLTSSTKWVIDSGATAHMTG+
Subjt:  SLQASSSSTPIASTVAPGNIKCLLTSSTKWVIDSGATAHMTGS

TrEMBL top hitse value%identityAlignment
A0A5A7SR90 Gag-pol polyprotein1.19e-12683.83Show/hide
Query:  CMQFFRAEQKAESVTSYFMRLKKIIAELGLLLPFSPDVKVQQVQREKMAVMIFLNGLLPEFGMAKTQILSDSKIPSLDDAFTRVLRIESSPTSVSIPQPS
        C++FFRAEQKAESVT+YFMRLKKI A L LLLPFSPDVKVQQ QREKM V IFLNGLLPEFGM K QILSDSKIPSLDDAFTRVLRIESSP  VSIPQ S
Subjt:  CMQFFRAEQKAESVTSYFMRLKKIIAELGLLLPFSPDVKVQQVQREKMAVMIFLNGLLPEFGMAKTQILSDSKIPSLDDAFTRVLRIESSPTSVSIPQPS

Query:  SALFSKNNNPRAP-------QRNSTDHRKPESVEIVCNYCRKPGHMKRDCRKLLYKNSQRSQHAQIASTCDIPEASVTISADEFAKFQNYQESLQASSSS
        SAL SKNNNPRAP       QR S DHRKP S +IVCNYC KPGH+KRDCRKLLYKNSQ+SQHAQIASTCDIPEASVTISADE+ KFQNYQ+ LQASSSS
Subjt:  SALFSKNNNPRAP-------QRNSTDHRKPESVEIVCNYCRKPGHMKRDCRKLLYKNSQRSQHAQIASTCDIPEASVTISADEFAKFQNYQESLQASSSS

Query:  TPIASTVAPGNIKCLLTSSTKWVIDSGATAHMTGS
        TPIASTVAPGN KCLLTSSTKWVIDS AT HMTG+
Subjt:  TPIASTVAPGNIKCLLTSSTKWVIDSGATAHMTGS

A0A5A7SVC9 Uncharacterized protein6.58e-9071.23Show/hide
Query:  AESVTSYFMRLKKIIAELGLLLPFSPDVKVQQVQREKMAVMIFLNGLLPEFGMAKTQILSDSKIPSLDDAFTRVLRIESSPTSVSIPQPSSALFSKNNNP
        +ESVT+YFMRLKKI AEL LLLPF+PDVKVQQ QREKMAVMI LNGLLPEFGM KTQILS+SKIPSLDDAFTRVLRIESSP  VSIPQ +S L SKNNNP
Subjt:  AESVTSYFMRLKKIIAELGLLLPFSPDVKVQQVQREKMAVMIFLNGLLPEFGMAKTQILSDSKIPSLDDAFTRVLRIESSPTSVSIPQPSSALFSKNNNP

Query:  RAPQRNSTDHRKPESVEIVCNYCRKPGHMKRDCRKLLYKNSQRSQHAQIASTCDIPEASVTISADEFAKFQNYQESLQASSSSTPIASTVAPGNIKCLLT
        RAP+                      G+++   RK++  ++Q  Q   IASTCDIPEAS+TISADE+AKFQNYQ+SLQA SSSTP+ASTVAPGN KCLLT
Subjt:  RAPQRNSTDHRKPESVEIVCNYCRKPGHMKRDCRKLLYKNSQRSQHAQIASTCDIPEASVTISADEFAKFQNYQESLQASSSSTPIASTVAPGNIKCLLT

Query:  SSTKWVIDSGATAHMTGSC
        SSTKWVIDSGAT HMTG C
Subjt:  SSTKWVIDSGATAHMTGSC

A0A5A7T406 Copia protein2.21e-9672.84Show/hide
Query:  KEQVHRMFEVCMQFFRAEQKAESVTSYFMRLKKIIAELGLLLPFSPDVKVQQVQREKMAVMIFLNGLLPEFGMAKTQILSDSKIPSLDDAFTRVLRIESS
        KEQVHRMFEVCMQF RAEQKAESVT+YFMRLKKI AEL LLLPFSPDVK Q                          ILSDSKIPSLD+AFTRVL  ESS
Subjt:  KEQVHRMFEVCMQFFRAEQKAESVTSYFMRLKKIIAELGLLLPFSPDVKVQQVQREKMAVMIFLNGLLPEFGMAKTQILSDSKIPSLDDAFTRVLRIESS

Query:  PTSVSIPQPSSALFSKNNNPRAPQR-------NSTDHRKPESVEIVCNYCRKPGHMKRDCRKLLYKNSQRSQHAQIASTCDIPEASVTISADEFAKFQNY
        P  VSIPQ S++L SKNNNPRAP+         S DHRKP+S EIVCNYCRKP H KRDCRKLLYKNSQ+SQHAQIASTCDIPEAS+TISA+E AK QNY
Subjt:  PTSVSIPQPSSALFSKNNNPRAPQR-------NSTDHRKPESVEIVCNYCRKPGHMKRDCRKLLYKNSQRSQHAQIASTCDIPEASVTISADEFAKFQNY

Query:  QESLQASSSSTPIASTVAPGNIKCLLTSSTKW
        Q+SLQASSSSTPIASTV PGN KCLLTSSTKW
Subjt:  QESLQASSSSTPIASTVAPGNIKCLLTSSTKW

A0A5D3D1J3 Uncharacterized protein1.53e-9071.23Show/hide
Query:  AESVTSYFMRLKKIIAELGLLLPFSPDVKVQQVQREKMAVMIFLNGLLPEFGMAKTQILSDSKIPSLDDAFTRVLRIESSPTSVSIPQPSSALFSKNNNP
        +ESVT+YFMRLKKI AEL LLLPF+PDVKVQQ QREKMAVMI LNGLLPEFGM KTQILS+SKIPSLDDAFTRVLRIESSP  VSIPQ +S L SKNNNP
Subjt:  AESVTSYFMRLKKIIAELGLLLPFSPDVKVQQVQREKMAVMIFLNGLLPEFGMAKTQILSDSKIPSLDDAFTRVLRIESSPTSVSIPQPSSALFSKNNNP

Query:  RAPQRNSTDHRKPESVEIVCNYCRKPGHMKRDCRKLLYKNSQRSQHAQIASTCDIPEASVTISADEFAKFQNYQESLQASSSSTPIASTVAPGNIKCLLT
        RAP+                      G+++   RK++  ++Q  Q   IASTCDIPEAS+TISADE+AKFQNYQ+SLQA SSSTP+ASTVAPGN KCLLT
Subjt:  RAPQRNSTDHRKPESVEIVCNYCRKPGHMKRDCRKLLYKNSQRSQHAQIASTCDIPEASVTISADEFAKFQNYQESLQASSSSTPIASTVAPGNIKCLLT

Query:  SSTKWVIDSGATAHMTGSC
        SSTKWVIDSGAT HMTG C
Subjt:  SSTKWVIDSGATAHMTGSC

A0A5D3E5M8 Copia protein1.88e-9673.28Show/hide
Query:  KEQVHRMFEVCMQFFRAEQKAESVTSYFMRLKKIIAELGLLLPFSPDVKVQQVQREKMAVMIFLNGLLPEFGMAKTQILSDSKIPSLDDAFTRVLRIESS
        KEQVHRMFEVCMQF RAEQKAESVT+YFMRLKKI AEL LLLPFSPDVK Q                          ILSDSKIPSLD+AFTRVLR ESS
Subjt:  KEQVHRMFEVCMQFFRAEQKAESVTSYFMRLKKIIAELGLLLPFSPDVKVQQVQREKMAVMIFLNGLLPEFGMAKTQILSDSKIPSLDDAFTRVLRIESS

Query:  PTSVSIPQPSSALFSKNNNPRAPQR-------NSTDHRKPESVEIVCNYCRKPGHMKRDCRKLLYKNSQRSQHAQIASTCDIPEASVTISADEFAKFQNY
        P  VSIPQ S++L SKNNNPRAP+         S DHRKP+S EIVCNYCRKP H KRDCRKLLYKNSQ+SQHAQIASTCDIPEAS+TISA+E AK QNY
Subjt:  PTSVSIPQPSSALFSKNNNPRAPQR-------NSTDHRKPESVEIVCNYCRKPGHMKRDCRKLLYKNSQRSQHAQIASTCDIPEASVTISADEFAKFQNY

Query:  QESLQASSSSTPIASTVAPGNIKCLLTSSTKW
        Q+SLQASSSSTPIASTV PGN KCLLTSSTKW
Subjt:  QESLQASSSSTPIASTVAPGNIKCLLTSSTKW

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TTTCTATACTCAGGTAAAGAGCAAGTGCATAGAATGTTTGAAGTTTGTATGCAATTTTTTCGTGCGGAACAGAAAGCTGAGTCTGTCACCAGCTACTTTATGCGGCTTAA
GAAGATCATTGCCGAGCTTGGCTTGTTGTTACCTTTTAGTCCTGATGTTAAAGTTCAACAAGTTCAACGAGAGAAGATGGCTGTTATGATTTTTCTGAATGGACTCTTAC
CTGAATTTGGAATGGCAAAGACACAGATTCTCTCTGACTCCAAGATTCCATCATTAGATGATGCCTTCACTCGAGTCCTTCGCATTGAAAGCTCTCCGACTAGTGTGTCT
ATTCCTCAACCCAGTAGTGCTCTCTTTAGCAAGAACAATAACCCTCGGGCACCTCAGAGGAATAGTACTGATCATCGAAAACCAGAGTCTGTAGAGATTGTTTGTAACTA
CTGTCGTAAGCCAGGCCATATGAAACGTGATTGTCGGAAATTGCTATATAAGAATAGTCAACGATCTCAACATGCTCAGATAGCCTCCACATGTGATATACCAGAGGCGT
CAGTTACTATTTCTGCAGATGAGTTTGCTAAGTTTCAGAATTACCAAGAGTCATTACAAGCGTCATCTTCCTCTACTCCGATTGCATCCACTGTTGCCCCAGGTAATATA
AAGTGTCTTCTTACATCATCTACCAAATGGGTCATAGACTCTGGTGCCACAGCTCATATGACAGGATCGTGTGACGAAGAAGATTATTGGTAG
mRNA sequenceShow/hide mRNA sequence
TTTCTATACTCAGGTAAAGAGCAAGTGCATAGAATGTTTGAAGTTTGTATGCAATTTTTTCGTGCGGAACAGAAAGCTGAGTCTGTCACCAGCTACTTTATGCGGCTTAA
GAAGATCATTGCCGAGCTTGGCTTGTTGTTACCTTTTAGTCCTGATGTTAAAGTTCAACAAGTTCAACGAGAGAAGATGGCTGTTATGATTTTTCTGAATGGACTCTTAC
CTGAATTTGGAATGGCAAAGACACAGATTCTCTCTGACTCCAAGATTCCATCATTAGATGATGCCTTCACTCGAGTCCTTCGCATTGAAAGCTCTCCGACTAGTGTGTCT
ATTCCTCAACCCAGTAGTGCTCTCTTTAGCAAGAACAATAACCCTCGGGCACCTCAGAGGAATAGTACTGATCATCGAAAACCAGAGTCTGTAGAGATTGTTTGTAACTA
CTGTCGTAAGCCAGGCCATATGAAACGTGATTGTCGGAAATTGCTATATAAGAATAGTCAACGATCTCAACATGCTCAGATAGCCTCCACATGTGATATACCAGAGGCGT
CAGTTACTATTTCTGCAGATGAGTTTGCTAAGTTTCAGAATTACCAAGAGTCATTACAAGCGTCATCTTCCTCTACTCCGATTGCATCCACTGTTGCCCCAGGTAATATA
AAGTGTCTTCTTACATCATCTACCAAATGGGTCATAGACTCTGGTGCCACAGCTCATATGACAGGATCGTGTGACGAAGAAGATTATTGGTAG
Protein sequenceShow/hide protein sequence
FLYSGKEQVHRMFEVCMQFFRAEQKAESVTSYFMRLKKIIAELGLLLPFSPDVKVQQVQREKMAVMIFLNGLLPEFGMAKTQILSDSKIPSLDDAFTRVLRIESSPTSVS
IPQPSSALFSKNNNPRAPQRNSTDHRKPESVEIVCNYCRKPGHMKRDCRKLLYKNSQRSQHAQIASTCDIPEASVTISADEFAKFQNYQESLQASSSSTPIASTVAPGNI
KCLLTSSTKWVIDSGATAHMTGSCDEEDYW