CuGenDBv2

Gene ID	Cucsat.G12177
Organism	Cucumis sativus L. var. sativus cv. B10 (Cucumber (B10) v3)
Description	ATP-dependent helicase/deoxyribonuclease subunit B
Genome location	ctg1837:1718197..1725013
RNA-Seq Expression	Cucsat.G12177
Synteny	Cucsat.G12177
Gene Ontology terms	GO:0006357 - regulation of transcription by RNA polymerase II (biological process) GO:0006979 - response to oxidative stress (biological process) GO:0009555 - pollen development (biological process) GO:0045893 - positive regulation of transcription, DNA-templated (biological process) GO:0005634 - nucleus (cellular component) GO:0005840 - ribosome (cellular component) GO:0005886 - plasma membrane (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0000981 - DNA-binding transcription factor activity, RNA polymerase II-specific (molecular function) GO:0016740 - transferase activity (molecular function) GO:0043565 - sequence-specific DNA binding (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

XP_004137681.1 uncharacterized protein LOC101203220 [Cucumis sativus]

5.86e-155

100

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Query:  MAKPPILSLLLSLLSLLPILLAYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPIYGVNREVLVPIPKPVGYTGADPYKISFQVGKEKFLVPWLLVINRKS
        MAKPPILSLLLSLLSLLPILLAYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPIYGVNREVLVPIPKPVGYTGADPYKISFQVGKEKFLVPWLLVINRKS
Subjt:  MAKPPILSLLLSLLSLLPILLAYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPIYGVNREVLVPIPKPVGYTGADPYKISFQVGKEKFLVPWLLVINRKS

Query:  AEVPMIDVHLRYSGSDLHGVTAKVVDMPHIYIDTHPHISKQFWDQQHWPKHILVRYTWEEQSEIDVTSGLYVLFGSGLTLSFILSVYILQSSKDKLARFV
        AEVPMIDVHLRYSGSDLHGVTAKVVDMPHIYIDTHPHISKQFWDQQHWPKHILVRYTWEEQSEIDVTSGLYVLFGSGLTLSFILSVYILQSSKDKLARFV
Subjt:  AEVPMIDVHLRYSGSDLHGVTAKVVDMPHIYIDTHPHISKQFWDQQHWPKHILVRYTWEEQSEIDVTSGLYVLFGSGLTLSFILSVYILQSSKDKLARFV

Query:  RETVVESSIPGVGVAKVE
        RETVVESSIPGVGVAKVE
Subjt:  RETVVESSIPGVGVAKVE

XP_008442331.1 PREDICTED: uncharacterized protein LOC103486235 isoform X1 [Cucumis melo]

7.89e-145

90.09

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Query:  MAKPPILSLLLSLLSLLPILLAYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPIYGVNREVLVPIPKPVGYTGADPYKISFQVGKEKFLVPWLLVINRKS
        M  PPILSLLLSLLSL+PI LAYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPI+GVNREVLVPIPKPVGYTGADPYKISFQVGKEKFLVPWLLVINRKS
Subjt:  MAKPPILSLLLSLLSLLPILLAYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPIYGVNREVLVPIPKPVGYTGADPYKISFQVGKEKFLVPWLLVINRKS

Query:  AEVPMIDVHLRYSGSDLHGVTAKVVDMPHIY--------------IDTHPHISKQFWDQQHWPKHILVRYTWEEQSEIDVTSGLYVLFGSGLTLSFILSV
        AEVPMIDVHLRYSGSDLHGVTAKVVDMPHI                DTHPHI+KQFWDQQHWPKHILVRYTWEEQSEIDVTSGLYVLFGSGLTLSFILS+
Subjt:  AEVPMIDVHLRYSGSDLHGVTAKVVDMPHIY--------------IDTHPHISKQFWDQQHWPKHILVRYTWEEQSEIDVTSGLYVLFGSGLTLSFILSV

Query:  YILQSSKDKLARFVRETVVESSIPGVGVAKVE
        YILQSSKDKLARFVRETVVESSIPGVGVAKVE
Subjt:  YILQSSKDKLARFVRETVVESSIPGVGVAKVE

XP_008442332.1 PREDICTED: uncharacterized protein LOC103486235 isoform X2 [Cucumis melo]

4.44e-150

96.33

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Query:  MAKPPILSLLLSLLSLLPILLAYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPIYGVNREVLVPIPKPVGYTGADPYKISFQVGKEKFLVPWLLVINRKS
        M  PPILSLLLSLLSL+PI LAYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPI+GVNREVLVPIPKPVGYTGADPYKISFQVGKEKFLVPWLLVINRKS
Subjt:  MAKPPILSLLLSLLSLLPILLAYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPIYGVNREVLVPIPKPVGYTGADPYKISFQVGKEKFLVPWLLVINRKS

Query:  AEVPMIDVHLRYSGSDLHGVTAKVVDMPHIYIDTHPHISKQFWDQQHWPKHILVRYTWEEQSEIDVTSGLYVLFGSGLTLSFILSVYILQSSKDKLARFV
        AEVPMIDVHLRYSGSDLHGVTAKVVDMPHIY DTHPHI+KQFWDQQHWPKHILVRYTWEEQSEIDVTSGLYVLFGSGLTLSFILS+YILQSSKDKLARFV
Subjt:  AEVPMIDVHLRYSGSDLHGVTAKVVDMPHIYIDTHPHISKQFWDQQHWPKHILVRYTWEEQSEIDVTSGLYVLFGSGLTLSFILSVYILQSSKDKLARFV

Query:  RETVVESSIPGVGVAKVE
        RETVVESSIPGVGVAKVE
Subjt:  RETVVESSIPGVGVAKVE

XP_022157271.1 uncharacterized protein LOC111024020 isoform X1 [Momordica charantia]

1.37e-144

91.74

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Query:  MAKPPILSLLLSLLSLLPILLAYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPIYGVNREVLVPIPKPVGYTGADPYKISFQVGKEKFLVPWLLVINRKS
        M +P ILSLL+ LL L+PI +AYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPI+ VNREVLVPIPKPVGYTGADPYKISFQVGKEKFL+PWLLVINRKS
Subjt:  MAKPPILSLLLSLLSLLPILLAYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPIYGVNREVLVPIPKPVGYTGADPYKISFQVGKEKFLVPWLLVINRKS

Query:  AEVPMIDVHLRYSGSDLHGVTAKVVDMPHIYIDTHPHISKQFWDQQHWPKHILVRYTWEEQSEIDVTSGLYVLFGSGLTLSFILSVYILQSSKDKLARFV
         EVPMIDVHLRYSGSDLHGVTAKV DMPHIYIDTHPHISKQFWDQQHWPKH+LVRYTWEEQSEIDVTSGLYVLFGSGLTL+FILS+YILQSSKDKLARFV
Subjt:  AEVPMIDVHLRYSGSDLHGVTAKVVDMPHIYIDTHPHISKQFWDQQHWPKHILVRYTWEEQSEIDVTSGLYVLFGSGLTLSFILSVYILQSSKDKLARFV

Query:  RETVVESSIPGVGVAKVE
        RETVVE+SIPGVGVAKVE
Subjt:  RETVVESSIPGVGVAKVE

XP_038903796.1 uncharacterized protein LOC120090293 isoform X1 [Benincasa hispida]

4.97e-147

94.04

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Query:  MAKPPILSLLLSLLSLLPILLAYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPIYGVNREVLVPIPKPVGYTGADPYKISFQVGKEKFLVPWLLVINRKS
        M +PPILSLL+SLLSL+PI LAYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPI+GVNREVLVPIPKPVGYTGADPYKISFQVGKEKFLVPWLLVINR+S
Subjt:  MAKPPILSLLLSLLSLLPILLAYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPIYGVNREVLVPIPKPVGYTGADPYKISFQVGKEKFLVPWLLVINRKS

Query:  AEVPMIDVHLRYSGSDLHGVTAKVVDMPHIYIDTHPHISKQFWDQQHWPKHILVRYTWEEQSEIDVTSGLYVLFGSGLTLSFILSVYILQSSKDKLARFV
        AEVPMIDVHLRYSGSDLHGVTAKVVDMPHIY DTHPHISK+FWDQQHWPKHILVRYTWEEQSEIDV SGLYVLFGSGLTLSFILS++ILQSSKDKLARFV
Subjt:  AEVPMIDVHLRYSGSDLHGVTAKVVDMPHIYIDTHPHISKQFWDQQHWPKHILVRYTWEEQSEIDVTSGLYVLFGSGLTLSFILSVYILQSSKDKLARFV

Query:  RETVVESSIPGVGVAKVE
        RETVVESSIP VGVAKVE
Subjt:  RETVVESSIPGVGVAKVE

TrEMBL top hits

e value

%identity

Alignment

A0A0A0L9R0 Uncharacterized protein

2.84e-155

100

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Query:  MAKPPILSLLLSLLSLLPILLAYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPIYGVNREVLVPIPKPVGYTGADPYKISFQVGKEKFLVPWLLVINRKS
        MAKPPILSLLLSLLSLLPILLAYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPIYGVNREVLVPIPKPVGYTGADPYKISFQVGKEKFLVPWLLVINRKS
Subjt:  MAKPPILSLLLSLLSLLPILLAYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPIYGVNREVLVPIPKPVGYTGADPYKISFQVGKEKFLVPWLLVINRKS

Query:  AEVPMIDVHLRYSGSDLHGVTAKVVDMPHIYIDTHPHISKQFWDQQHWPKHILVRYTWEEQSEIDVTSGLYVLFGSGLTLSFILSVYILQSSKDKLARFV
        AEVPMIDVHLRYSGSDLHGVTAKVVDMPHIYIDTHPHISKQFWDQQHWPKHILVRYTWEEQSEIDVTSGLYVLFGSGLTLSFILSVYILQSSKDKLARFV
Subjt:  AEVPMIDVHLRYSGSDLHGVTAKVVDMPHIYIDTHPHISKQFWDQQHWPKHILVRYTWEEQSEIDVTSGLYVLFGSGLTLSFILSVYILQSSKDKLARFV

Query:  RETVVESSIPGVGVAKVE
        RETVVESSIPGVGVAKVE
Subjt:  RETVVESSIPGVGVAKVE

A0A1S3B5G0 uncharacterized protein LOC103486235 isoform X1

3.82e-145

90.09

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Query:  MAKPPILSLLLSLLSLLPILLAYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPIYGVNREVLVPIPKPVGYTGADPYKISFQVGKEKFLVPWLLVINRKS
        M  PPILSLLLSLLSL+PI LAYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPI+GVNREVLVPIPKPVGYTGADPYKISFQVGKEKFLVPWLLVINRKS
Subjt:  MAKPPILSLLLSLLSLLPILLAYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPIYGVNREVLVPIPKPVGYTGADPYKISFQVGKEKFLVPWLLVINRKS

Query:  AEVPMIDVHLRYSGSDLHGVTAKVVDMPHIY--------------IDTHPHISKQFWDQQHWPKHILVRYTWEEQSEIDVTSGLYVLFGSGLTLSFILSV
        AEVPMIDVHLRYSGSDLHGVTAKVVDMPHI                DTHPHI+KQFWDQQHWPKHILVRYTWEEQSEIDVTSGLYVLFGSGLTLSFILS+
Subjt:  AEVPMIDVHLRYSGSDLHGVTAKVVDMPHIY--------------IDTHPHISKQFWDQQHWPKHILVRYTWEEQSEIDVTSGLYVLFGSGLTLSFILSV

Query:  YILQSSKDKLARFVRETVVESSIPGVGVAKVE
        YILQSSKDKLARFVRETVVESSIPGVGVAKVE
Subjt:  YILQSSKDKLARFVRETVVESSIPGVGVAKVE

A0A1S3B641 uncharacterized protein LOC103486235 isoform X2

2.15e-150

96.33

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Query:  MAKPPILSLLLSLLSLLPILLAYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPIYGVNREVLVPIPKPVGYTGADPYKISFQVGKEKFLVPWLLVINRKS
        M  PPILSLLLSLLSL+PI LAYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPI+GVNREVLVPIPKPVGYTGADPYKISFQVGKEKFLVPWLLVINRKS
Subjt:  MAKPPILSLLLSLLSLLPILLAYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPIYGVNREVLVPIPKPVGYTGADPYKISFQVGKEKFLVPWLLVINRKS

Query:  AEVPMIDVHLRYSGSDLHGVTAKVVDMPHIYIDTHPHISKQFWDQQHWPKHILVRYTWEEQSEIDVTSGLYVLFGSGLTLSFILSVYILQSSKDKLARFV
        AEVPMIDVHLRYSGSDLHGVTAKVVDMPHIY DTHPHI+KQFWDQQHWPKHILVRYTWEEQSEIDVTSGLYVLFGSGLTLSFILS+YILQSSKDKLARFV
Subjt:  AEVPMIDVHLRYSGSDLHGVTAKVVDMPHIYIDTHPHISKQFWDQQHWPKHILVRYTWEEQSEIDVTSGLYVLFGSGLTLSFILSVYILQSSKDKLARFV

Query:  RETVVESSIPGVGVAKVE
        RETVVESSIPGVGVAKVE
Subjt:  RETVVESSIPGVGVAKVE

A0A5A7TLX6 Uncharacterized protein

2.15e-150

96.33

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Query:  MAKPPILSLLLSLLSLLPILLAYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPIYGVNREVLVPIPKPVGYTGADPYKISFQVGKEKFLVPWLLVINRKS
        M  PPILSLLLSLLSL+PI LAYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPI+GVNREVLVPIPKPVGYTGADPYKISFQVGKEKFLVPWLLVINRKS
Subjt:  MAKPPILSLLLSLLSLLPILLAYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPIYGVNREVLVPIPKPVGYTGADPYKISFQVGKEKFLVPWLLVINRKS

Query:  AEVPMIDVHLRYSGSDLHGVTAKVVDMPHIYIDTHPHISKQFWDQQHWPKHILVRYTWEEQSEIDVTSGLYVLFGSGLTLSFILSVYILQSSKDKLARFV
        AEVPMIDVHLRYSGSDLHGVTAKVVDMPHIY DTHPHI+KQFWDQQHWPKHILVRYTWEEQSEIDVTSGLYVLFGSGLTLSFILS+YILQSSKDKLARFV
Subjt:  AEVPMIDVHLRYSGSDLHGVTAKVVDMPHIYIDTHPHISKQFWDQQHWPKHILVRYTWEEQSEIDVTSGLYVLFGSGLTLSFILSVYILQSSKDKLARFV

Query:  RETVVESSIPGVGVAKVE
        RETVVESSIPGVGVAKVE
Subjt:  RETVVESSIPGVGVAKVE

A0A6J1DXJ6 uncharacterized protein LOC111024020 isoform X1

6.62e-145

91.74

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Query:  MAKPPILSLLLSLLSLLPILLAYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPIYGVNREVLVPIPKPVGYTGADPYKISFQVGKEKFLVPWLLVINRKS
        M +P ILSLL+ LL L+PI +AYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPI+ VNREVLVPIPKPVGYTGADPYKISFQVGKEKFL+PWLLVINRKS
Subjt:  MAKPPILSLLLSLLSLLPILLAYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPIYGVNREVLVPIPKPVGYTGADPYKISFQVGKEKFLVPWLLVINRKS

Query:  AEVPMIDVHLRYSGSDLHGVTAKVVDMPHIYIDTHPHISKQFWDQQHWPKHILVRYTWEEQSEIDVTSGLYVLFGSGLTLSFILSVYILQSSKDKLARFV
         EVPMIDVHLRYSGSDLHGVTAKV DMPHIYIDTHPHISKQFWDQQHWPKH+LVRYTWEEQSEIDVTSGLYVLFGSGLTL+FILS+YILQSSKDKLARFV
Subjt:  AEVPMIDVHLRYSGSDLHGVTAKVVDMPHIYIDTHPHISKQFWDQQHWPKHILVRYTWEEQSEIDVTSGLYVLFGSGLTLSFILSVYILQSSKDKLARFV

Query:  RETVVESSIPGVGVAKVE
        RETVVE+SIPGVGVAKVE
Subjt:  RETVVESSIPGVGVAKVE

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT3G51610.1 unknown protein

2.1e-91

75.48

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Query:  ILSLLLSLLSLLPILLAYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPIYGVNREVLVPIPKPVGYTGADPYKISFQVGKEKFLVPWLLVINRKSAEVPM
        I +L+L  LS   +  AYRPGDIV MSKMGQYHSSRT WHD+IG+HCPI+ VNREVL+PI KP+GYTG DPYKI FQVG EKFL+ WLLVINRKS+EVPM
Subjt:  ILSLLLSLLSLLPILLAYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPIYGVNREVLVPIPKPVGYTGADPYKISFQVGKEKFLVPWLLVINRKSAEVPM

Query:  IDVHLRYSGSDLHGVTAKVVDMPHIYIDTHPHISKQFWDQQHWPKHILVRYTWEEQSEIDVTSGLYVLFGSGLTLSFILSVYILQSSKDKLARFVRETVV
        IDV+LRYSG DL GVTA+V+DMPH Y++THP I KQFWD QHWPKH+LVRYTW+EQSEIDV+SG YVLFGS LT SF+LS+Y+LQSS++KLARFVRETVV
Subjt:  IDVHLRYSGSDLHGVTAKVVDMPHIYIDTHPHISKQFWDQQHWPKHILVRYTWEEQSEIDVTSGLYVLFGSGLTLSFILSVYILQSSKDKLARFVRETVV

Query:  ESSIPGVG
        ESS   VG
Subjt:  ESSIPGVG

Sequences

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CDS sequence

Show/hide CDS sequence

ATGGCAAAGCCTCCAATTCTTTCTCTACTCCTTTCCTTATTGTCGCTCCTTCCCATTTTGCTGGCTTACAGGCCTGGAGACATTGTTCCGATGAGCAAGATGGGACAGTA
TCACTCGTCGAGAACAGTTTGGCATGATATGATAGGTCGTCATTGTCCAATTTATGGAGTTAATCGCGAGGTTCTAGTTCCTATACCGAAACCGGTCGGCTACACAGGAG
CTGATCCCTATAAAATATCCTTTCAAGTTGGAAAAGAGAAGTTTCTAGTCCCATGGCTTCTTGTGATAAATCGCAAAAGTGCAGAAGTTCCAATGATTGATGTCCACTTG
AGGTACTCTGGAAGTGATCTTCATGGTGTGACTGCCAAAGTAGTGGACATGCCTCATATCTACATTGATACACATCCACATATTAGCAAACAATTCTGGGATCAACAGCA
TTGGCCGAAGCACATTCTTGTCCGTTATACATGGGAGGAGCAATCAGAGATTGATGTGACTTCGGGATTATATGTTTTGTTCGGATCAGGTCTTACGCTATCTTTTATTC
TGTCGGTTTACATCTTGCAATCATCGAAGGACAAGTTGGCAAGGTTTGTAAGAGAAACAGTAGTTGAAAGCAGCATTCCTGGCGTAGGAGTGGCAAAAGTGGAATAG

mRNA sequence

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Protein sequence

Show/hide protein sequence

MAKPPILSLLLSLLSLLPILLAYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPIYGVNREVLVPIPKPVGYTGADPYKISFQVGKEKFLVPWLLVINRKSAEVPMIDVHL
RYSGSDLHGVTAKVVDMPHIYIDTHPHISKQFWDQQHWPKHILVRYTWEEQSEIDVTSGLYVLFGSGLTLSFILSVYILQSSKDKLARFVRETVVESSIPGVGVAKVE

Cucsat.G12177 (gene) of Cucumber (B10) v3 genome