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Cucsat.G12297 (gene) of Cucumber (B10) v3 genome

Gene IDCucsat.G12297
OrganismCucumis sativus L. var. sativus cv. B10 (Cucumber (B10) v3)
DescriptionRAB6-interacting golgin
Genome locationctg1837:3691207..3693935
RNA-Seq ExpressionCucsat.G12297
SyntenyCucsat.G12297
Gene Ontology termsGO:0005794 - Golgi apparatus (cellular component)
GO:0016020 - membrane (cellular component)
InterPro domainsIPR007033 - RAB6-interacting golgin


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004137876.1 GRB10-interacting GYF protein 2 [Cucumis sativus]8.40e-8498.63Show/hide
Query:  MQPEQAQQQQQLMVQNNTGSLSFSSHLSKEDEEISRSALSTFRAKEEEIERKKMEVREKVQAQLGRVEEETKRLACIREELEALADPMRKEVAQVRKKID
        MQPEQAQQQQQLMVQNNTGSLSFSSHLSKEDEEISRSALSTFRAKEEEIERKKMEVREKVQAQLGRVEEETKRLACIREELEALADPMRKEVAQVRKKID
Subjt:  MQPEQAQQQQQLMVQNNTGSLSFSSHLSKEDEEISRSALSTFRAKEEEIERKKMEVREKVQAQLGRVEEETKRLACIREELEALADPMRKEVAQVRKKID

Query:  AVNKELKPLGHTCQKKEKEYKEALEAFNDKNKEKVQLITKLMEVSS
        AVNKELKPLGHTCQKKEKEYKEALEAFNDKNKEKVQLITKLME+ S
Subjt:  AVNKELKPLGHTCQKKEKEYKEALEAFNDKNKEKVQLITKLMEVSS

XP_008442808.1 PREDICTED: uncharacterized protein LOC103486581 [Cucumis melo]2.41e-8397.95Show/hide
Query:  MQPEQAQQQQQLMVQNNTGSLSFSSHLSKEDEEISRSALSTFRAKEEEIERKKMEVREKVQAQLGRVEEETKRLACIREELEALADPMRKEVAQVRKKID
        MQPEQAQQQQQLMVQNNTGSLSFSSHLSKEDEEISRSALSTFRAKEEEIERKKMEVREKVQAQLGRVEEETKRLACIREELEALADPMRKEVAQVRK+ID
Subjt:  MQPEQAQQQQQLMVQNNTGSLSFSSHLSKEDEEISRSALSTFRAKEEEIERKKMEVREKVQAQLGRVEEETKRLACIREELEALADPMRKEVAQVRKKID

Query:  AVNKELKPLGHTCQKKEKEYKEALEAFNDKNKEKVQLITKLMEVSS
        AVNKELKPLGHTCQKKEKEYKEALEAFNDKNKEKVQLITKLME+ S
Subjt:  AVNKELKPLGHTCQKKEKEYKEALEAFNDKNKEKVQLITKLMEVSS

XP_022144720.1 uncharacterized protein LOC111014340 [Momordica charantia]9.20e-7694.29Show/hide
Query:  QQQQQLMVQNNTGSLSFSSHLSKEDEEISRSALSTFRAKEEEIERKKMEVREKVQAQLGRVEEETKRLACIREELEALADPMRKEVAQVRKKIDAVNKEL
        Q QQQLMVQNN GSLSFSSHLSKEDEEISRSALSTFRAKEEEIERKKMEVREKVQ QLGRVEEETKRLACIREELEALADPMRKEVAQVRKKIDAVNKEL
Subjt:  QQQQQLMVQNNTGSLSFSSHLSKEDEEISRSALSTFRAKEEEIERKKMEVREKVQAQLGRVEEETKRLACIREELEALADPMRKEVAQVRKKIDAVNKEL

Query:  KPLGHTCQKKEKEYKEALEAFNDKNKEKVQLITKLMEVSS
        KPLGHTCQKKEKEYK+AL+AFN+KNKEKVQLITKLME+ S
Subjt:  KPLGHTCQKKEKEYKEALEAFNDKNKEKVQLITKLMEVSS

XP_022945279.1 uncharacterized protein LOC111449572 [Cucurbita moschata]9.33e-8195.21Show/hide
Query:  MQPEQAQQQQQLMVQNNTGSLSFSSHLSKEDEEISRSALSTFRAKEEEIERKKMEVREKVQAQLGRVEEETKRLACIREELEALADPMRKEVAQVRKKID
        MQPEQAQQQQQL+VQNN GSLSFSSHLSKEDEEISRSALSTFRAKEEEIERKKMEVREKVQ QLGRVEEETKRLACIREELEALADPMRKEVAQVRK+ID
Subjt:  MQPEQAQQQQQLMVQNNTGSLSFSSHLSKEDEEISRSALSTFRAKEEEIERKKMEVREKVQAQLGRVEEETKRLACIREELEALADPMRKEVAQVRKKID

Query:  AVNKELKPLGHTCQKKEKEYKEALEAFNDKNKEKVQLITKLMEVSS
        AVNKELKPLGHTCQKKEKEYKEAL+AFNDKNKEKVQLITKLME+ S
Subjt:  AVNKELKPLGHTCQKKEKEYKEALEAFNDKNKEKVQLITKLMEVSS

XP_038903091.1 GRB10-interacting GYF protein 2-like [Benincasa hispida]1.39e-8297.95Show/hide
Query:  MQPEQAQQQQQLMVQNNTGSLSFSSHLSKEDEEISRSALSTFRAKEEEIERKKMEVREKVQAQLGRVEEETKRLACIREELEALADPMRKEVAQVRKKID
        MQ EQAQQQQQLMVQNNTGSLSFSSHLSKEDEEISRSALSTFRAKEEEIERKKMEVREKVQAQLGRVEEETKRLACIREELEALADPMRKEVAQVRKKID
Subjt:  MQPEQAQQQQQLMVQNNTGSLSFSSHLSKEDEEISRSALSTFRAKEEEIERKKMEVREKVQAQLGRVEEETKRLACIREELEALADPMRKEVAQVRKKID

Query:  AVNKELKPLGHTCQKKEKEYKEALEAFNDKNKEKVQLITKLMEVSS
        AVNKELKPLGHTCQKKEKEYKEALEAFNDKNKEKVQLITKLME+ S
Subjt:  AVNKELKPLGHTCQKKEKEYKEALEAFNDKNKEKVQLITKLMEVSS

TrEMBL top hitse value%identityAlignment
A0A0A0LGI7 RAB6-interacting golgin4.07e-8498.63Show/hide
Query:  MQPEQAQQQQQLMVQNNTGSLSFSSHLSKEDEEISRSALSTFRAKEEEIERKKMEVREKVQAQLGRVEEETKRLACIREELEALADPMRKEVAQVRKKID
        MQPEQAQQQQQLMVQNNTGSLSFSSHLSKEDEEISRSALSTFRAKEEEIERKKMEVREKVQAQLGRVEEETKRLACIREELEALADPMRKEVAQVRKKID
Subjt:  MQPEQAQQQQQLMVQNNTGSLSFSSHLSKEDEEISRSALSTFRAKEEEIERKKMEVREKVQAQLGRVEEETKRLACIREELEALADPMRKEVAQVRKKID

Query:  AVNKELKPLGHTCQKKEKEYKEALEAFNDKNKEKVQLITKLMEVSS
        AVNKELKPLGHTCQKKEKEYKEALEAFNDKNKEKVQLITKLME+ S
Subjt:  AVNKELKPLGHTCQKKEKEYKEALEAFNDKNKEKVQLITKLMEVSS

A0A1S3B6L6 RAB6-interacting golgin1.16e-8397.95Show/hide
Query:  MQPEQAQQQQQLMVQNNTGSLSFSSHLSKEDEEISRSALSTFRAKEEEIERKKMEVREKVQAQLGRVEEETKRLACIREELEALADPMRKEVAQVRKKID
        MQPEQAQQQQQLMVQNNTGSLSFSSHLSKEDEEISRSALSTFRAKEEEIERKKMEVREKVQAQLGRVEEETKRLACIREELEALADPMRKEVAQVRK+ID
Subjt:  MQPEQAQQQQQLMVQNNTGSLSFSSHLSKEDEEISRSALSTFRAKEEEIERKKMEVREKVQAQLGRVEEETKRLACIREELEALADPMRKEVAQVRKKID

Query:  AVNKELKPLGHTCQKKEKEYKEALEAFNDKNKEKVQLITKLMEVSS
        AVNKELKPLGHTCQKKEKEYKEALEAFNDKNKEKVQLITKLME+ S
Subjt:  AVNKELKPLGHTCQKKEKEYKEALEAFNDKNKEKVQLITKLMEVSS

A0A5D3DPH8 RAB6-interacting golgin1.16e-8397.95Show/hide
Query:  MQPEQAQQQQQLMVQNNTGSLSFSSHLSKEDEEISRSALSTFRAKEEEIERKKMEVREKVQAQLGRVEEETKRLACIREELEALADPMRKEVAQVRKKID
        MQPEQAQQQQQLMVQNNTGSLSFSSHLSKEDEEISRSALSTFRAKEEEIERKKMEVREKVQAQLGRVEEETKRLACIREELEALADPMRKEVAQVRK+ID
Subjt:  MQPEQAQQQQQLMVQNNTGSLSFSSHLSKEDEEISRSALSTFRAKEEEIERKKMEVREKVQAQLGRVEEETKRLACIREELEALADPMRKEVAQVRKKID

Query:  AVNKELKPLGHTCQKKEKEYKEALEAFNDKNKEKVQLITKLMEVSS
        AVNKELKPLGHTCQKKEKEYKEALEAFNDKNKEKVQLITKLME+ S
Subjt:  AVNKELKPLGHTCQKKEKEYKEALEAFNDKNKEKVQLITKLMEVSS

A0A6J1G0J9 RAB6-interacting golgin4.52e-8195.21Show/hide
Query:  MQPEQAQQQQQLMVQNNTGSLSFSSHLSKEDEEISRSALSTFRAKEEEIERKKMEVREKVQAQLGRVEEETKRLACIREELEALADPMRKEVAQVRKKID
        MQPEQAQQQQQL+VQNN GSLSFSSHLSKEDEEISRSALSTFRAKEEEIERKKMEVREKVQ QLGRVEEETKRLACIREELEALADPMRKEVAQVRK+ID
Subjt:  MQPEQAQQQQQLMVQNNTGSLSFSSHLSKEDEEISRSALSTFRAKEEEIERKKMEVREKVQAQLGRVEEETKRLACIREELEALADPMRKEVAQVRKKID

Query:  AVNKELKPLGHTCQKKEKEYKEALEAFNDKNKEKVQLITKLMEVSS
        AVNKELKPLGHTCQKKEKEYKEAL+AFNDKNKEKVQLITKLME+ S
Subjt:  AVNKELKPLGHTCQKKEKEYKEALEAFNDKNKEKVQLITKLMEVSS

A0A6J1KYK3 RAB6-interacting golgin4.52e-8195.21Show/hide
Query:  MQPEQAQQQQQLMVQNNTGSLSFSSHLSKEDEEISRSALSTFRAKEEEIERKKMEVREKVQAQLGRVEEETKRLACIREELEALADPMRKEVAQVRKKID
        MQPEQAQQQQQL+VQNN GSLSFSSHLSKEDEEISRSALSTFRAKEEEIERKKMEVREKVQ QLGRVEEETKRLACIREELEALADPMRKEVAQVRK+ID
Subjt:  MQPEQAQQQQQLMVQNNTGSLSFSSHLSKEDEEISRSALSTFRAKEEEIERKKMEVREKVQAQLGRVEEETKRLACIREELEALADPMRKEVAQVRKKID

Query:  AVNKELKPLGHTCQKKEKEYKEALEAFNDKNKEKVQLITKLMEVSS
        AVNKELKPLGHTCQKKEKEYKEAL+AFNDKNKEKVQLITKLME+ S
Subjt:  AVNKELKPLGHTCQKKEKEYKEALEAFNDKNKEKVQLITKLMEVSS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G36410.1 Family of unknown function (DUF662)2.8e-4972.6Show/hide
Query:  QPEQAQQQQQLMVQNNTGSLSFSSHLSKEDEEISRSALSTFRAKEEEIERKKMEVREKVQAQLGRVEEETKRLACIREELEALADPMRKEVAQVRKKIDA
        QP+   QQQ   +  +TGSLSFSSH+S+EDEE++RSALS FRAKE+EIE+++MEVRE++QAQLGRVE+ETKRL+ IREELE++ADPMRKEV+ VRKKID+
Subjt:  QPEQAQQQQQLMVQNNTGSLSFSSHLSKEDEEISRSALSTFRAKEEEIERKKMEVREKVQAQLGRVEEETKRLACIREELEALADPMRKEVAQVRKKIDA

Query:  VNKELKPLGHTCQKKEKEYKEALEAFNDKNKEKVQLITKLMEVSSL
        VNKELKPLG T QKKE+EYKEAL+ FN+KN+EKVQLITKLME+  L
Subjt:  VNKELKPLGHTCQKKEKEYKEALEAFNDKNKEKVQLITKLMEVSSL

AT2G36410.2 Family of unknown function (DUF662)6.3e-4973.43Show/hide
Query:  QPEQAQQQQQLMVQNNTGSLSFSSHLSKEDEEISRSALSTFRAKEEEIERKKMEVREKVQAQLGRVEEETKRLACIREELEALADPMRKEVAQVRKKIDA
        QP+   QQQ   +  +TGSLSFSSH+S+EDEE++RSALS FRAKE+EIE+++MEVRE++QAQLGRVE+ETKRL+ IREELE++ADPMRKEV+ VRKKID+
Subjt:  QPEQAQQQQQLMVQNNTGSLSFSSHLSKEDEEISRSALSTFRAKEEEIERKKMEVREKVQAQLGRVEEETKRLACIREELEALADPMRKEVAQVRKKIDA

Query:  VNKELKPLGHTCQKKEKEYKEALEAFNDKNKEKVQLITKLMEV
        VNKELKPLG T QKKE+EYKEAL+ FN+KN+EKVQLITKLME+
Subjt:  VNKELKPLGHTCQKKEKEYKEALEAFNDKNKEKVQLITKLMEV

AT2G36410.3 Family of unknown function (DUF662)9.1e-4872.73Show/hide
Query:  QPEQAQQQQQLMVQNNTGSLSFSSHLSKEDEEISRSALSTFRAKEEEIERKKMEVREKVQAQLGRVEEETKRLACIREELEALADPMRKEVAQVRKKIDA
        QP+   QQQ   +  +TGSLSFSSH+S+EDEE++RSALS FRAKE+EIE+++MEVRE++QAQLGRVE+ETKRL+ IREELE++ADPMRKEV+ VRKKID+
Subjt:  QPEQAQQQQQLMVQNNTGSLSFSSHLSKEDEEISRSALSTFRAKEEEIERKKMEVREKVQAQLGRVEEETKRLACIREELEALADPMRKEVAQVRKKIDA

Query:  VNKELKPLGHTCQKKEKEYKEALEAFNDKNKEKVQLITKLMEV
        VNKELKPLG T QKK  EYKEAL+ FN+KN+EKVQLITKLME+
Subjt:  VNKELKPLGHTCQKKEKEYKEALEAFNDKNKEKVQLITKLMEV

AT3G09980.1 Family of unknown function (DUF662)6.7e-5184.25Show/hide
Query:  TGSLSFSSHLSKEDEEISRSALSTFRAKEEEIERKKMEVREKVQAQLGRVEEETKRLACIREELEALADPMRKEVAQVRKKIDAVNKELKPLGHTCQKKE
        +GS+SFSS +SKEDEE+SR+ALS FRAKEEEIE+KKME+RE+VQAQLGRVEEETKRLA IREELE LADPMRKEVA VRKKID+VNKELKPLGHT QKKE
Subjt:  TGSLSFSSHLSKEDEEISRSALSTFRAKEEEIERKKMEVREKVQAQLGRVEEETKRLACIREELEALADPMRKEVAQVRKKIDAVNKELKPLGHTCQKKE

Query:  KEYKEALEAFNDKNKEKVQLITKLMEV
        +EYKEALEAFN+KN+EKVQLIT+LME+
Subjt:  KEYKEALEAFNDKNKEKVQLITKLMEV

AT3G52920.1 Family of unknown function (DUF662)3.8e-4674.47Show/hide
Query:  QQQQQLMVQNNTGSLSFSSHLSKEDEEISRSALSTFRAKEEEIERKKMEVREKVQAQLGRVEEETKRLACIREELEALADPMRKEVAQVRKKIDAVNKEL
        Q  QQ+M      SLSFSS +SKEDEE++RSALS FRAKE+EIE++KMEVRE+V+AQLGRVEEET+RLA IREELE +ADPMRKEV  VRKKID+VNKEL
Subjt:  QQQQQLMVQNNTGSLSFSSHLSKEDEEISRSALSTFRAKEEEIERKKMEVREKVQAQLGRVEEETKRLACIREELEALADPMRKEVAQVRKKIDAVNKEL

Query:  KPLGHTCQKKEKEYKEALEAFNDKNKEKVQLITKLMEVSSL
        KPLG T QKKE+EYKEAL+ FN+KN+EKVQLITKLME+  L
Subjt:  KPLGHTCQKKEKEYKEALEAFNDKNKEKVQLITKLMEVSSL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAGCCTGAACAAGCTCAACAACAGCAACAATTAATGGTGCAGAACAACACAGGAAGCTTAAGCTTCAGCAGCCATTTGTCTAAGGAAGATGAAGAGATTTCCAGGTC
GGCTCTTTCCACTTTCAGAGCTAAGGAAGAGGAGATCGAGAGGAAGAAGATGGAAGTAAGAGAGAAGGTTCAAGCTCAGTTAGGCCGAGTTGAAGAAGAAACCAAACGCC
TTGCTTGCATCCGTGAGGAACTTGAGGCACTGGCAGATCCAATGAGGAAGGAAGTGGCACAAGTTCGTAAAAAGATCGATGCTGTAAACAAGGAATTAAAGCCTCTGGGA
CATACTTGTCAAAAGAAGGAAAAAGAGTACAAGGAAGCCCTTGAAGCCTTTAACGACAAGAACAAGGAAAAAGTTCAGCTCATCACGAAATTAATGGAGGTAAGTTCCCT
TGAGTTCCTTTCGTTCTCCATCATCTGCACGTCAAACGTCATAAATAACCGGGTGATAGGAACCAAATTTTGCACAACTGGAGGCTATTCAATAAATTTTGAACCTTGTT
GA
mRNA sequenceShow/hide mRNA sequence
ATGCAGCCTGAACAAGCTCAACAACAGCAACAATTAATGGTGCAGAACAACACAGGAAGCTTAAGCTTCAGCAGCCATTTGTCTAAGGAAGATGAAGAGATTTCCAGGTC
GGCTCTTTCCACTTTCAGAGCTAAGGAAGAGGAGATCGAGAGGAAGAAGATGGAAGTAAGAGAGAAGGTTCAAGCTCAGTTAGGCCGAGTTGAAGAAGAAACCAAACGCC
TTGCTTGCATCCGTGAGGAACTTGAGGCACTGGCAGATCCAATGAGGAAGGAAGTGGCACAAGTTCGTAAAAAGATCGATGCTGTAAACAAGGAATTAAAGCCTCTGGGA
CATACTTGTCAAAAGAAGGAAAAAGAGTACAAGGAAGCCCTTGAAGCCTTTAACGACAAGAACAAGGAAAAAGTTCAGCTCATCACGAAATTAATGGAGGTAAGTTCCCT
TGAGTTCCTTTCGTTCTCCATCATCTGCACGTCAAACGTCATAAATAACCGGGTGATAGGAACCAAATTTTGCACAACTGGAGGCTATTCAATAAATTTTGAACCTTGTT
GA
Protein sequenceShow/hide protein sequence
MQPEQAQQQQQLMVQNNTGSLSFSSHLSKEDEEISRSALSTFRAKEEEIERKKMEVREKVQAQLGRVEEETKRLACIREELEALADPMRKEVAQVRKKIDAVNKELKPLG
HTCQKKEKEYKEALEAFNDKNKEKVQLITKLMEVSSLEFLSFSIICTSNVINNRVIGTKFCTTGGYSINFEPC