; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cucsat.G12338 (gene) of Cucumber (B10) v3 genome

Gene IDCucsat.G12338
OrganismCucumis sativus L. var. sativus cv. B10 (Cucumber (B10) v3)
DescriptionPectin lyase-like superfamily protein
Genome locationctg1837:457407..459158
RNA-Seq ExpressionCucsat.G12338
SyntenyCucsat.G12338
Gene Ontology termsGO:0005975 - carbohydrate metabolic process (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0004650 - polygalacturonase activity (molecular function)
InterPro domainsIPR000743 - Glycoside hydrolase, family 28
IPR006626 - Parallel beta-helix repeat
IPR011050 - Pectin lyase fold/virulence factor
IPR012334 - Pectin lyase fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0038107.1 polygalacturonase [Cucumis melo var. makuwa]1.20e-14891.44Show/hide
Query:  STIFTGPCKNGVVFQVDGTLMAPDGPDAWPKGYSAHQWLVFYRVYNMSLQGNGLIDGRGQKWWDLPCKPHKGKTMTGPCDSPIAIRFFMSSELRVEGVRI
        STIFTGPC+NG+VFQVDGTLMAPDGPDAWPKGYSAHQWLVFYRVYNMSLQGNGLIDGRGQKWWDLPCKPHK K+++       AIRFFMSS+LRVEGVRI
Subjt:  STIFTGPCKNGVVFQVDGTLMAPDGPDAWPKGYSAHQWLVFYRVYNMSLQGNGLIDGRGQKWWDLPCKPHKGKTMTGPCDSPIAIRFFMSSELRVEGVRI

Query:  KDSPQFHFRFDNCKDVYIDSLHITSPALSPNTDGIHIENTNGVQIFNSIVANGDDCVSIGSGSFNVEIRNITCGPGHGISIGSLGNHNSRACVSNITVRD
        KDSPQFHFRFDNCKDVYIDSLHITSPALSPNTDGIHIENTNGVQIFNSIVANGDDC+SIGSGS+NVEI NITCGPGHGISIGSLGNHNSRACVSNITVRD
Subjt:  KDSPQFHFRFDNCKDVYIDSLHITSPALSPNTDGIHIENTNGVQIFNSIVANGDDCVSIGSGSFNVEIRNITCGPGHGISIGSLGNHNSRACVSNITVRD

Query:  SIIKVSDNGVRIKTWQGGFGTV
        SIIKVSDNGVRIKTWQGG+G V
Subjt:  SIIKVSDNGVRIKTWQGGFGTV

TYK20501.1 polygalacturonase [Cucumis melo var. makuwa]2.33e-16196.4Show/hide
Query:  STIFTGPCKNGVVFQVDGTLMAPDGPDAWPKGYSAHQWLVFYRVYNMSLQGNGLIDGRGQKWWDLPCKPHKGKTMTGPCDSPIAIRFFMSSELRVEGVRI
        STIFTGPC+NG+VFQVDGTLMAPDGPDAWPKGYSAHQWLVFYRVYNMSLQGNGLIDGRGQKWWDLPCKPHKGKTMTGPCDSPIAIRFFMSS+LRVEGVRI
Subjt:  STIFTGPCKNGVVFQVDGTLMAPDGPDAWPKGYSAHQWLVFYRVYNMSLQGNGLIDGRGQKWWDLPCKPHKGKTMTGPCDSPIAIRFFMSSELRVEGVRI

Query:  KDSPQFHFRFDNCKDVYIDSLHITSPALSPNTDGIHIENTNGVQIFNSIVANGDDCVSIGSGSFNVEIRNITCGPGHGISIGSLGNHNSRACVSNITVRD
        KDSPQFHFRFDNCKDVYIDSLHITSPALSPNTDGIHIENTNGVQIFNSIVANGDDC+SIGSGS+NVEI NITCGPGHGISIGSLGNHNSRACVSNITVRD
Subjt:  KDSPQFHFRFDNCKDVYIDSLHITSPALSPNTDGIHIENTNGVQIFNSIVANGDDCVSIGSGSFNVEIRNITCGPGHGISIGSLGNHNSRACVSNITVRD

Query:  SIIKVSDNGVRIKTWQGGFGTV
        SIIKVSDNGVRIKTWQGG+G V
Subjt:  SIIKVSDNGVRIKTWQGGFGTV

XP_016900401.1 PREDICTED: polygalacturonase At1g48100, partial [Cucumis melo]7.39e-16296.4Show/hide
Query:  STIFTGPCKNGVVFQVDGTLMAPDGPDAWPKGYSAHQWLVFYRVYNMSLQGNGLIDGRGQKWWDLPCKPHKGKTMTGPCDSPIAIRFFMSSELRVEGVRI
        STIFTGPC+NG+VFQVDGTLMAPDGPDAWPKGYSAHQWLVFYRVYNMSLQGNGLIDGRGQKWWDLPCKPHKGKTMTGPCDSPIAIRFFMSS+LRVEGVRI
Subjt:  STIFTGPCKNGVVFQVDGTLMAPDGPDAWPKGYSAHQWLVFYRVYNMSLQGNGLIDGRGQKWWDLPCKPHKGKTMTGPCDSPIAIRFFMSSELRVEGVRI

Query:  KDSPQFHFRFDNCKDVYIDSLHITSPALSPNTDGIHIENTNGVQIFNSIVANGDDCVSIGSGSFNVEIRNITCGPGHGISIGSLGNHNSRACVSNITVRD
        KDSPQFHFRFDNCKDVYIDSLHITSPALSPNTDGIHIENTNGVQIFNSIVANGDDC+SIGSGS+NVEI NITCGPGHGISIGSLGNHNSRACVSNITVRD
Subjt:  KDSPQFHFRFDNCKDVYIDSLHITSPALSPNTDGIHIENTNGVQIFNSIVANGDDCVSIGSGSFNVEIRNITCGPGHGISIGSLGNHNSRACVSNITVRD

Query:  SIIKVSDNGVRIKTWQGGFGTV
        SIIKVSDNGVRIKTWQGG+G V
Subjt:  SIIKVSDNGVRIKTWQGGFGTV

XP_031737994.1 polygalacturonase At1g48100 [Cucumis sativus]1.93e-165100Show/hide
Query:  STIFTGPCKNGVVFQVDGTLMAPDGPDAWPKGYSAHQWLVFYRVYNMSLQGNGLIDGRGQKWWDLPCKPHKGKTMTGPCDSPIAIRFFMSSELRVEGVRI
        STIFTGPCKNGVVFQVDGTLMAPDGPDAWPKGYSAHQWLVFYRVYNMSLQGNGLIDGRGQKWWDLPCKPHKGKTMTGPCDSPIAIRFFMSSELRVEGVRI
Subjt:  STIFTGPCKNGVVFQVDGTLMAPDGPDAWPKGYSAHQWLVFYRVYNMSLQGNGLIDGRGQKWWDLPCKPHKGKTMTGPCDSPIAIRFFMSSELRVEGVRI

Query:  KDSPQFHFRFDNCKDVYIDSLHITSPALSPNTDGIHIENTNGVQIFNSIVANGDDCVSIGSGSFNVEIRNITCGPGHGISIGSLGNHNSRACVSNITVRD
        KDSPQFHFRFDNCKDVYIDSLHITSPALSPNTDGIHIENTNGVQIFNSIVANGDDCVSIGSGSFNVEIRNITCGPGHGISIGSLGNHNSRACVSNITVRD
Subjt:  KDSPQFHFRFDNCKDVYIDSLHITSPALSPNTDGIHIENTNGVQIFNSIVANGDDCVSIGSGSFNVEIRNITCGPGHGISIGSLGNHNSRACVSNITVRD

Query:  SIIKVSDNGVRIKTWQGGFGTV
        SIIKVSDNGVRIKTWQGGFGTV
Subjt:  SIIKVSDNGVRIKTWQGGFGTV

XP_038905655.1 polygalacturonase At1g48100-like [Benincasa hispida]1.40e-14989.78Show/hide
Query:  STIFTGPCKNGVVFQVDGTLMAPDGPDAWPKGYSAHQWLVFYRVYNMSLQGNGLIDGRGQKWWDLPCKPHKG---KTMTGPCDSPIAIRFFMSSELRVEG
        STIFTGPCKNGV FQV GTLMAPDGPDAWPK YSAHQWLVFYRVYNMSL+GNGLIDGRGQKWWDLPCKPHKG   +TM+ PCDSPIAIRFFMSS L VEG
Subjt:  STIFTGPCKNGVVFQVDGTLMAPDGPDAWPKGYSAHQWLVFYRVYNMSLQGNGLIDGRGQKWWDLPCKPHKG---KTMTGPCDSPIAIRFFMSSELRVEG

Query:  VRIKDSPQFHFRFDNCKDVYIDSLHITSPALSPNTDGIHIENTNGVQIFNSIVANGDDCVSIGSGSFNVEIRNITCGPGHGISIGSLGNHNSRACVSNIT
        +RIKDSPQFHFRFDNCKDV ID +HIT+PALSPNTDGIHIENTNGVQIFNS VANGDDC+SIGSGS+NV+IRNITCGPGHGISIGSLGNHNSRACVSNIT
Subjt:  VRIKDSPQFHFRFDNCKDVYIDSLHITSPALSPNTDGIHIENTNGVQIFNSIVANGDDCVSIGSGSFNVEIRNITCGPGHGISIGSLGNHNSRACVSNIT

Query:  VRDSIIKVSDNGVRIKTWQGGFGTV
        VRDSIIKVSDNGVRIKTWQGG+G V
Subjt:  VRDSIIKVSDNGVRIKTWQGGFGTV

TrEMBL top hitse value%identityAlignment
A0A0A0LEQ6 Uncharacterized protein5.82e-166100Show/hide
Query:  STIFTGPCKNGVVFQVDGTLMAPDGPDAWPKGYSAHQWLVFYRVYNMSLQGNGLIDGRGQKWWDLPCKPHKGKTMTGPCDSPIAIRFFMSSELRVEGVRI
        STIFTGPCKNGVVFQVDGTLMAPDGPDAWPKGYSAHQWLVFYRVYNMSLQGNGLIDGRGQKWWDLPCKPHKGKTMTGPCDSPIAIRFFMSSELRVEGVRI
Subjt:  STIFTGPCKNGVVFQVDGTLMAPDGPDAWPKGYSAHQWLVFYRVYNMSLQGNGLIDGRGQKWWDLPCKPHKGKTMTGPCDSPIAIRFFMSSELRVEGVRI

Query:  KDSPQFHFRFDNCKDVYIDSLHITSPALSPNTDGIHIENTNGVQIFNSIVANGDDCVSIGSGSFNVEIRNITCGPGHGISIGSLGNHNSRACVSNITVRD
        KDSPQFHFRFDNCKDVYIDSLHITSPALSPNTDGIHIENTNGVQIFNSIVANGDDCVSIGSGSFNVEIRNITCGPGHGISIGSLGNHNSRACVSNITVRD
Subjt:  KDSPQFHFRFDNCKDVYIDSLHITSPALSPNTDGIHIENTNGVQIFNSIVANGDDCVSIGSGSFNVEIRNITCGPGHGISIGSLGNHNSRACVSNITVRD

Query:  SIIKVSDNGVRIKTWQGGFGTV
        SIIKVSDNGVRIKTWQGGFGTV
Subjt:  SIIKVSDNGVRIKTWQGGFGTV

A0A1S4DWP4 polygalacturonase At1g481003.58e-16296.4Show/hide
Query:  STIFTGPCKNGVVFQVDGTLMAPDGPDAWPKGYSAHQWLVFYRVYNMSLQGNGLIDGRGQKWWDLPCKPHKGKTMTGPCDSPIAIRFFMSSELRVEGVRI
        STIFTGPC+NG+VFQVDGTLMAPDGPDAWPKGYSAHQWLVFYRVYNMSLQGNGLIDGRGQKWWDLPCKPHKGKTMTGPCDSPIAIRFFMSS+LRVEGVRI
Subjt:  STIFTGPCKNGVVFQVDGTLMAPDGPDAWPKGYSAHQWLVFYRVYNMSLQGNGLIDGRGQKWWDLPCKPHKGKTMTGPCDSPIAIRFFMSSELRVEGVRI

Query:  KDSPQFHFRFDNCKDVYIDSLHITSPALSPNTDGIHIENTNGVQIFNSIVANGDDCVSIGSGSFNVEIRNITCGPGHGISIGSLGNHNSRACVSNITVRD
        KDSPQFHFRFDNCKDVYIDSLHITSPALSPNTDGIHIENTNGVQIFNSIVANGDDC+SIGSGS+NVEI NITCGPGHGISIGSLGNHNSRACVSNITVRD
Subjt:  KDSPQFHFRFDNCKDVYIDSLHITSPALSPNTDGIHIENTNGVQIFNSIVANGDDCVSIGSGSFNVEIRNITCGPGHGISIGSLGNHNSRACVSNITVRD

Query:  SIIKVSDNGVRIKTWQGGFGTV
        SIIKVSDNGVRIKTWQGG+G V
Subjt:  SIIKVSDNGVRIKTWQGGFGTV

A0A5A7T924 Polygalacturonase5.79e-14991.44Show/hide
Query:  STIFTGPCKNGVVFQVDGTLMAPDGPDAWPKGYSAHQWLVFYRVYNMSLQGNGLIDGRGQKWWDLPCKPHKGKTMTGPCDSPIAIRFFMSSELRVEGVRI
        STIFTGPC+NG+VFQVDGTLMAPDGPDAWPKGYSAHQWLVFYRVYNMSLQGNGLIDGRGQKWWDLPCKPHK K+++       AIRFFMSS+LRVEGVRI
Subjt:  STIFTGPCKNGVVFQVDGTLMAPDGPDAWPKGYSAHQWLVFYRVYNMSLQGNGLIDGRGQKWWDLPCKPHKGKTMTGPCDSPIAIRFFMSSELRVEGVRI

Query:  KDSPQFHFRFDNCKDVYIDSLHITSPALSPNTDGIHIENTNGVQIFNSIVANGDDCVSIGSGSFNVEIRNITCGPGHGISIGSLGNHNSRACVSNITVRD
        KDSPQFHFRFDNCKDVYIDSLHITSPALSPNTDGIHIENTNGVQIFNSIVANGDDC+SIGSGS+NVEI NITCGPGHGISIGSLGNHNSRACVSNITVRD
Subjt:  KDSPQFHFRFDNCKDVYIDSLHITSPALSPNTDGIHIENTNGVQIFNSIVANGDDCVSIGSGSFNVEIRNITCGPGHGISIGSLGNHNSRACVSNITVRD

Query:  SIIKVSDNGVRIKTWQGGFGTV
        SIIKVSDNGVRIKTWQGG+G V
Subjt:  SIIKVSDNGVRIKTWQGGFGTV

A0A5D3DA93 Polygalacturonase1.13e-16196.4Show/hide
Query:  STIFTGPCKNGVVFQVDGTLMAPDGPDAWPKGYSAHQWLVFYRVYNMSLQGNGLIDGRGQKWWDLPCKPHKGKTMTGPCDSPIAIRFFMSSELRVEGVRI
        STIFTGPC+NG+VFQVDGTLMAPDGPDAWPKGYSAHQWLVFYRVYNMSLQGNGLIDGRGQKWWDLPCKPHKGKTMTGPCDSPIAIRFFMSS+LRVEGVRI
Subjt:  STIFTGPCKNGVVFQVDGTLMAPDGPDAWPKGYSAHQWLVFYRVYNMSLQGNGLIDGRGQKWWDLPCKPHKGKTMTGPCDSPIAIRFFMSSELRVEGVRI

Query:  KDSPQFHFRFDNCKDVYIDSLHITSPALSPNTDGIHIENTNGVQIFNSIVANGDDCVSIGSGSFNVEIRNITCGPGHGISIGSLGNHNSRACVSNITVRD
        KDSPQFHFRFDNCKDVYIDSLHITSPALSPNTDGIHIENTNGVQIFNSIVANGDDC+SIGSGS+NVEI NITCGPGHGISIGSLGNHNSRACVSNITVRD
Subjt:  KDSPQFHFRFDNCKDVYIDSLHITSPALSPNTDGIHIENTNGVQIFNSIVANGDDCVSIGSGSFNVEIRNITCGPGHGISIGSLGNHNSRACVSNITVRD

Query:  SIIKVSDNGVRIKTWQGGFGTV
        SIIKVSDNGVRIKTWQGG+G V
Subjt:  SIIKVSDNGVRIKTWQGGFGTV

A0A6J1FAK7 polygalacturonase At1g48100-like9.67e-14888Show/hide
Query:  STIFTGPCKNGVVFQVDGTLMAPDGPDAWPKGYSAHQWLVFYRVYNMSLQGNGLIDGRGQKWWDLPCKPH---KGKTMTGPCDSPIAIRFFMSSELRVEG
        STIFTGPCK+G+VFQVDGT +APDGPDAWPK YSAHQWLVFYRV NMSL+GNG+IDGRGQKWWDLPCKPH   KG+T  GPCDSPIAIRFFMSS L VEG
Subjt:  STIFTGPCKNGVVFQVDGTLMAPDGPDAWPKGYSAHQWLVFYRVYNMSLQGNGLIDGRGQKWWDLPCKPH---KGKTMTGPCDSPIAIRFFMSSELRVEG

Query:  VRIKDSPQFHFRFDNCKDVYIDSLHITSPALSPNTDGIHIENTNGVQIFNSIVANGDDCVSIGSGSFNVEIRNITCGPGHGISIGSLGNHNSRACVSNIT
        +RIKDSPQFHFRFDNC+DVYIDSL IT+PA SPNTDGIHIENTNGVQI NS+VANGDDC+SIGSGS+NV+IRNITCGPGHGISIGSLGNHNSRACVSNIT
Subjt:  VRIKDSPQFHFRFDNCKDVYIDSLHITSPALSPNTDGIHIENTNGVQIFNSIVANGDDCVSIGSGSFNVEIRNITCGPGHGISIGSLGNHNSRACVSNIT

Query:  VRDSIIKVSDNGVRIKTWQGGFGTV
        VRDSIIKVSDNGVRIKTWQGGFG V
Subjt:  VRDSIIKVSDNGVRIKTWQGGFGTV

SwissProt top hitse value%identityAlignment
P05117 Polygalacturonase-21.2e-5145.41Show/hide
Query:  FTGPCKNGVVFQVDGTLMAPDGPDAWPKGYSAHQWLVFYRVYNMSLQGNGLIDGRGQKWWDLPCKPHKGKTMTGPC-DSPIAIRFFMSSELRVEGVRIKD
        F+GPC++ +  ++ G+L A      +        W+ F  V N+ + G G I+G GQ WW   CK +K      PC D+P A+ F+    L+V  ++ K+
Subjt:  FTGPCKNGVVFQVDGTLMAPDGPDAWPKGYSAHQWLVFYRVYNMSLQGNGLIDGRGQKWWDLPCKPHKGKTMTGPC-DSPIAIRFFMSSELRVEGVRIKD

Query:  SPQFHFRFDNCKDVYIDSLHITSPALSPNTDGIHIENTNGVQIFNSIVANGDDCVSIGSGSFNVEIRNITCGPGHGISIGSLGNHNSRACVSNITVRDSI
        + Q H +F++C +V   +L I + A SPNTDG+H+ NT  +QI ++I+  GDDC+SI SGS NV+  NITCGPGHGISIGSLG+ NS A VSN+TV ++ 
Subjt:  SPQFHFRFDNCKDVYIDSLHITSPALSPNTDGIHIENTNGVQIFNSIVANGDDCVSIGSGSFNVEIRNITCGPGHGISIGSLGNHNSRACVSNITVRDSI

Query:  IKVSDNGVRIKTWQGGFG
        I  ++NGVRIKTWQGG G
Subjt:  IKVSDNGVRIKTWQGGFG

P35336 Polygalacturonase6.5e-5345.21Show/hide
Query:  FTGPCKNGVVFQVDGTLMAPDGPDAWPKGYSAHQWLVFYRVYNMSLQGNGLIDGRGQKWWDLPCKPHKGKTMTGPC-DSPIAIRFFMSSELRVEGVRIKD
        F+GPCK+G+  Q+ GT+ A D    + K      WLVF  V N+ ++G G I+G G+ WW   CK +K      PC D+P A+ F+ S  + V+ ++I++
Subjt:  FTGPCKNGVVFQVDGTLMAPDGPDAWPKGYSAHQWLVFYRVYNMSLQGNGLIDGRGQKWWDLPCKPHKGKTMTGPC-DSPIAIRFFMSSELRVEGVRIKD

Query:  SPQFHFRFDNCKDVYIDSLHITSPALSPNTDGIHIENTNGVQIFNSIVANGDDCVSIGSGSFNVEIRNITCGPGHGISIGSLGNHNSRACVSNITVRDSI
        + Q H  FDNC +V   +L +T+P  SPNTDGIH+  T  + I + ++  GDDC+SI +GS  V + +ITCGPGHGISIGSLG  NS A VS++ V  + 
Subjt:  SPQFHFRFDNCKDVYIDSLHITSPALSPNTDGIHIENTNGVQIFNSIVANGDDCVSIGSGSFNVEIRNITCGPGHGISIGSLGNHNSRACVSNITVRDSI

Query:  IKVSDNGVRIKTWQGGFGT
        +  + NGVRIKTWQGG G+
Subjt:  IKVSDNGVRIKTWQGGFGT

Q02096 Polygalacturonase9.4e-5245.66Show/hide
Query:  FTGPCKNGVVFQVDGTLMAPDGPDAWPKGYSAHQWLVFYRVYNMSLQGNGLIDGRGQKWWDLPCKPHKGKTMTGPCDS-PIAIRFFMSSELRVEGVRIKD
        F+GPCK+ +  ++ GT+ A      W  G++  +W+ F  + N++L+G G  +G G+ WWD  CK  K      PC S P A+ F     L V  + IKD
Subjt:  FTGPCKNGVVFQVDGTLMAPDGPDAWPKGYSAHQWLVFYRVYNMSLQGNGLIDGRGQKWWDLPCKPHKGKTMTGPCDS-PIAIRFFMSSELRVEGVRIKD

Query:  SPQFHFRFDNCKDVYIDSLHITSPALSPNTDGIHIENTNGVQIFNSIVANGDDCVSIGSGSFNVEIRNITCGPGHGISIGSLGNHNSRACVSNITVRDSI
        S + H  FD C+DV   +L +T+P  SPNTDGIHI  T  + + NS++  GDDC+SI SGS  V   NITCGPGHGISIGSLG+ NS A VS + V    
Subjt:  SPQFHFRFDNCKDVYIDSLHITSPALSPNTDGIHIENTNGVQIFNSIVANGDDCVSIGSGSFNVEIRNITCGPGHGISIGSLGNHNSRACVSNITVRDSI

Query:  IKVSDNGVRIKTWQGGFGT
        +  + NG+RIKTWQGG G+
Subjt:  IKVSDNGVRIKTWQGGFGT

Q949Z1 Polygalacturonase At1g481002.4e-8761.78Show/hide
Query:  STIFTGPCKNGVVFQVDGTLMAPDGPDAWPKGYSAHQWLVFYRVYNMSLQGNGLIDGRGQKWWDLPCKPHK---GKTMTGPCDSPIAIRFFMSSELRVEG
        STIF+GPCK G+VFQ+DG LM PDGP+ WP+  + +QWLVFYR+   +  G G ++G GQKWWDLPCKPH+   G + +GPC SP  IRFFMS+ + V+G
Subjt:  STIFTGPCKNGVVFQVDGTLMAPDGPDAWPKGYSAHQWLVFYRVYNMSLQGNGLIDGRGQKWWDLPCKPHK---GKTMTGPCDSPIAIRFFMSSELRVEG

Query:  VRIKDSPQFHFRFDNCKDVYIDSLHITSPALSPNTDGIHIENTNGVQIFNSIVANGDDCVSIGSGSFNVEIRNITCGPGHGISIGSLGNHNSRACVSNIT
        +RI++SPQFH +FD C+ V I+ + I+SP LSPNTDGIH+ NT  V I+NS+V+NGDDC+SIG+G  +V+I+ +TCGP HGISIGSLG HNS+ACVSNIT
Subjt:  VRIKDSPQFHFRFDNCKDVYIDSLHITSPALSPNTDGIHIENTNGVQIFNSIVANGDDCVSIGSGSFNVEIRNITCGPGHGISIGSLGNHNSRACVSNIT

Query:  VRDSIIKVSDNGVRIKTWQGGFGTV
        VR+++I+ SDNG+R+KTWQGG G+V
Subjt:  VRDSIIKVSDNGVRIKTWQGGFGTV

Q94AJ5 Probable polygalacturonase At1g801705.0e-5345.21Show/hide
Query:  TGPCKNGVVFQVDGTLMAPDGPDAWPKGYSAHQWLVFYRVYNMSLQGNGLIDGRGQKWWDLPCKPHKGKTMTGPC-DSPIAIRFFMSSELRVEGVRIKDS
        +GPCK  +  Q+ GT++AP+ PD W +G +  +WL F+ +  ++++G G ++G GQ+WW+  CK +     + PC  +P A+ F     +RVE + + DS
Subjt:  TGPCKNGVVFQVDGTLMAPDGPDAWPKGYSAHQWLVFYRVYNMSLQGNGLIDGRGQKWWDLPCKPHKGKTMTGPC-DSPIAIRFFMSSELRVEGVRIKDS

Query:  PQFHFRFDNCKDVYIDSLHITSPALSPNTDGIHIENTNGVQIFNSIVANGDDCVSIGSGSFNVEIRNITCGPGHGISIGSLGNHNSRACVSNITVRDSII
         Q H    +C+ V I  L + +PA SPNTDGIHI  + G+ I N+ V+ GDDC+SI   S  + I NI CGPGHGISIGSLG   S   V +ITV  +II
Subjt:  PQFHFRFDNCKDVYIDSLHITSPALSPNTDGIHIENTNGVQIFNSIVANGDDCVSIGSGSFNVEIRNITCGPGHGISIGSLGNHNSRACVSNITVRDSII

Query:  KVSDNGVRIKTWQGGFGTV
          + NGVRIKTWQGG G V
Subjt:  KVSDNGVRIKTWQGGFGTV

Arabidopsis top hitse value%identityAlignment
AT1G02460.1 Pectin lyase-like superfamily protein1.7e-10474.89Show/hide
Query:  STIFTGPCKNGVVFQVDGTLMAPDGPDAWPKGYSAHQWLVFYRVYNMSLQGNGLIDGRGQKWWDLPCKPH----KGKTMTGPCDSPIAIRFFMSSELRVE
        STIFTGPC++   FQVDGT++ PDGP++WP   S  QWLVFYRV  M+L+G G+IDGRGQKWWDLPCKPH    K   +TGPCDSPIA+RFFMSS LRVE
Subjt:  STIFTGPCKNGVVFQVDGTLMAPDGPDAWPKGYSAHQWLVFYRVYNMSLQGNGLIDGRGQKWWDLPCKPH----KGKTMTGPCDSPIAIRFFMSSELRVE

Query:  GVRIKDSPQFHFRFDNCKDVYIDSLHITSPALSPNTDGIHIENTNGVQIFNSIVANGDDCVSIGSGSFNVEIRNITCGP-GHGISIGSLGNHNSRACVSN
        G++IK+SPQFHFRFD C+ V+++SLHIT+P LSPNTDGIHIEN+N V I+NSI++NGDDCVSIGSGS++V+IRN+TCGP GHGISIGSLGNHNSRACVSN
Subjt:  GVRIKDSPQFHFRFDNCKDVYIDSLHITSPALSPNTDGIHIENTNGVQIFNSIVANGDDCVSIGSGSFNVEIRNITCGP-GHGISIGSLGNHNSRACVSN

Query:  ITVRDSIIKVSDNGVRIKTWQGGFGTV
        ITVRDS+IK SDNGVRIKTWQGG G+V
Subjt:  ITVRDSIIKVSDNGVRIKTWQGGFGTV

AT1G48100.1 Pectin lyase-like superfamily protein1.7e-8861.78Show/hide
Query:  STIFTGPCKNGVVFQVDGTLMAPDGPDAWPKGYSAHQWLVFYRVYNMSLQGNGLIDGRGQKWWDLPCKPHK---GKTMTGPCDSPIAIRFFMSSELRVEG
        STIF+GPCK G+VFQ+DG LM PDGP+ WP+  + +QWLVFYR+   +  G G ++G GQKWWDLPCKPH+   G + +GPC SP  IRFFMS+ + V+G
Subjt:  STIFTGPCKNGVVFQVDGTLMAPDGPDAWPKGYSAHQWLVFYRVYNMSLQGNGLIDGRGQKWWDLPCKPHK---GKTMTGPCDSPIAIRFFMSSELRVEG

Query:  VRIKDSPQFHFRFDNCKDVYIDSLHITSPALSPNTDGIHIENTNGVQIFNSIVANGDDCVSIGSGSFNVEIRNITCGPGHGISIGSLGNHNSRACVSNIT
        +RI++SPQFH +FD C+ V I+ + I+SP LSPNTDGIH+ NT  V I+NS+V+NGDDC+SIG+G  +V+I+ +TCGP HGISIGSLG HNS+ACVSNIT
Subjt:  VRIKDSPQFHFRFDNCKDVYIDSLHITSPALSPNTDGIHIENTNGVQIFNSIVANGDDCVSIGSGSFNVEIRNITCGPGHGISIGSLGNHNSRACVSNIT

Query:  VRDSIIKVSDNGVRIKTWQGGFGTV
        VR+++I+ SDNG+R+KTWQGG G+V
Subjt:  VRDSIIKVSDNGVRIKTWQGGFGTV

AT1G56710.1 Pectin lyase-like superfamily protein8.9e-9064.73Show/hide
Query:  TIFTGPCKNGVVFQVDGTLMAPDGPDAWPKGYSAHQWLVFYRVYNMSLQGNGLIDGRGQKWWDLPCKPHK---GKTMTGPCDSPIAIRFFMSSELRVEGV
        T F GPC+  +V Q+DG +++PDGP +WP  Y   QW++FYRV  +S+QG+G+I+GRGQKWW+LPCKPHK   G T TGPCDSP+AIR F SS++R++G+
Subjt:  TIFTGPCKNGVVFQVDGTLMAPDGPDAWPKGYSAHQWLVFYRVYNMSLQGNGLIDGRGQKWWDLPCKPHK---GKTMTGPCDSPIAIRFFMSSELRVEGV

Query:  RIKDSPQFHFRFDNCKDVYIDSLHITSPALSPNTDGIHIENTNGVQIFNSIVANGDDCVSIGSGSFNVEIRNITCGPGHGISIGSLGNHNSRACVSNITV
           +S QFH RFDNC DV +DS+ I +PA SPNTDGIHIENT+ VQI NS+++NGDDC+SIG+G FNV+I+N+TCGP HGISIGSLG HNS+A VSNITV
Subjt:  RIKDSPQFHFRFDNCKDVYIDSLHITSPALSPNTDGIHIENTNGVQIFNSIVANGDDCVSIGSGSFNVEIRNITCGPGHGISIGSLGNHNSRACVSNITV

Query:  RDSIIKVSDNGVRIKTWQGGFGTV
         +S I  SDNGVRIKTWQGG G+V
Subjt:  RDSIIKVSDNGVRIKTWQGGFGTV

AT4G01890.1 Pectin lyase-like superfamily protein3.4e-8965.2Show/hide
Query:  STIFTGPCKNGVVFQVDGTLMAPDGPDAWPKGYSAHQWLVFYRVYNMSLQGNGLIDGRGQKWWDLPCKPHK---GKT-MTGPCDSPIAIRFFMSSELRVE
        STIFTGPC++   FQVDGT++  DGP +WP   +  QWL FYR+  M+LQG G+IDGRGQ WWDLPCKPH+    KT + GPC+SP A+RFFMSS + V+
Subjt:  STIFTGPCKNGVVFQVDGTLMAPDGPDAWPKGYSAHQWLVFYRVYNMSLQGNGLIDGRGQKWWDLPCKPHK---GKT-MTGPCDSPIAIRFFMSSELRVE

Query:  GVRIKDSPQFHFRFDNCKDVYIDSLHITSPALSPNTDGIHIENTNGVQIFNSIVANGDDCVSIGSGSFNVEIRNITCGP-GHGISIGSLGNHNSRACVSN
        G+ IK+SPQ H + D C  V+I+SL I SP  SPNTDGIHIEN+N V+I+NS+++NGDDCVSIG G+++++IRNITCGP GHGISIGSLG  NS ACVSN
Subjt:  GVRIKDSPQFHFRFDNCKDVYIDSLHITSPALSPNTDGIHIENTNGVQIFNSIVANGDDCVSIGSGSFNVEIRNITCGP-GHGISIGSLGNHNSRACVSN

Query:  ITVRDSIIKVSDNGVRIKTWQGGFGTV
        +TVRDS IK S+NGVRIKTWQGG G+V
Subjt:  ITVRDSIIKVSDNGVRIKTWQGGFGTV

AT5G14650.1 Pectin lyase-like superfamily protein1.3e-5645.41Show/hide
Query:  STIFTGP-------CKNGVVFQVDGTLMAPDGPDAWPKGYSAHQWLVFYRVYNMSLQGNGLIDGRGQKWWDLPCKPHKGKTMTGPCDSPIAIRFFMSSEL
        ST   GP       CK  +VFQ++G ++AP    AW  G    QW+ F  +  ++++G G+IDGRG  WW+       G  M  P   P A+RF+ S+ +
Subjt:  STIFTGP-------CKNGVVFQVDGTLMAPDGPDAWPKGYSAHQWLVFYRVYNMSLQGNGLIDGRGQKWWDLPCKPHKGKTMTGPCDSPIAIRFFMSSEL

Query:  RVEGVRIKDSPQFHFRFDNCKDVYIDSLHITSPALSPNTDGIHIENTNGVQIFNSIVANGDDCVSIGSGSFNVEIRNITCGPGHGISIGSLGNHNSRACV
         V G+ I++SPQ H +FDNC  + +     +SP  SPNTDGIH++N+    I+ S +A GDDC+SI +G  N+ I ++ CGPGHGISIG LG  N++ACV
Subjt:  RVEGVRIKDSPQFHFRFDNCKDVYIDSLHITSPALSPNTDGIHIENTNGVQIFNSIVANGDDCVSIGSGSFNVEIRNITCGPGHGISIGSLGNHNSRACV

Query:  SNITVRDSIIKVSDNGVRIKTWQGGFGTV
        SNITVRD  +  + NGVRIK+WQGG G+V
Subjt:  SNITVRDSIIKVSDNGVRIKTWQGGFGTV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TCGACTATTTTCACAGGACCGTGCAAAAATGGCGTTGTGTTTCAAGTTGATGGCACTCTTATGGCACCTGACGGGCCTGACGCTTGGCCGAAGGGTTATAGTGCTCACCA
ATGGTTGGTTTTTTATCGAGTTTATAACATGTCACTTCAAGGAAATGGCCTTATTGATGGTCGAGGCCAAAAATGGTGGGATCTTCCTTGCAAACCTCACAAGGGGAAAA
CAATGACAGGACCTTGTGACAGCCCAATTGCTATAAGATTTTTCATGAGCTCAGAGTTGAGAGTTGAAGGAGTTAGAATCAAAGACAGTCCTCAATTCCATTTTAGGTTT
GACAACTGTAAAGATGTTTATATTGATTCTCTTCACATAACATCTCCTGCTTTGAGCCCAAACACTGATGGAATCCACATTGAGAATACAAATGGTGTTCAGATTTTCAA
TTCAATAGTTGCCAATGGTGATGATTGTGTTTCAATTGGATCGGGTTCATTTAACGTAGAAATAAGAAACATTACATGTGGACCAGGTCATGGAATTAGCATTGGTAGTC
TAGGGAATCACAACTCACGAGCGTGCGTATCGAACATAACAGTTCGGGACTCAATAATTAAGGTCTCAGACAATGGTGTTCGAATCAAGACATGGCAAGGTGGATTTGGT
ACCGTA
mRNA sequenceShow/hide mRNA sequence
TCGACTATTTTCACAGGACCGTGCAAAAATGGCGTTGTGTTTCAAGTTGATGGCACTCTTATGGCACCTGACGGGCCTGACGCTTGGCCGAAGGGTTATAGTGCTCACCA
ATGGTTGGTTTTTTATCGAGTTTATAACATGTCACTTCAAGGAAATGGCCTTATTGATGGTCGAGGCCAAAAATGGTGGGATCTTCCTTGCAAACCTCACAAGGGGAAAA
CAATGACAGGACCTTGTGACAGCCCAATTGCTATAAGATTTTTCATGAGCTCAGAGTTGAGAGTTGAAGGAGTTAGAATCAAAGACAGTCCTCAATTCCATTTTAGGTTT
GACAACTGTAAAGATGTTTATATTGATTCTCTTCACATAACATCTCCTGCTTTGAGCCCAAACACTGATGGAATCCACATTGAGAATACAAATGGTGTTCAGATTTTCAA
TTCAATAGTTGCCAATGGTGATGATTGTGTTTCAATTGGATCGGGTTCATTTAACGTAGAAATAAGAAACATTACATGTGGACCAGGTCATGGAATTAGCATTGGTAGTC
TAGGGAATCACAACTCACGAGCGTGCGTATCGAACATAACAGTTCGGGACTCAATAATTAAGGTCTCAGACAATGGTGTTCGAATCAAGACATGGCAAGGTGGATTTGGT
ACCGTA
Protein sequenceShow/hide protein sequence
STIFTGPCKNGVVFQVDGTLMAPDGPDAWPKGYSAHQWLVFYRVYNMSLQGNGLIDGRGQKWWDLPCKPHKGKTMTGPCDSPIAIRFFMSSELRVEGVRIKDSPQFHFRF
DNCKDVYIDSLHITSPALSPNTDGIHIENTNGVQIFNSIVANGDDCVSIGSGSFNVEIRNITCGPGHGISIGSLGNHNSRACVSNITVRDSIIKVSDNGVRIKTWQGGFG
TV