; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cucsat.G12343 (gene) of Cucumber (B10) v3 genome

Gene IDCucsat.G12343
OrganismCucumis sativus L. var. sativus cv. B10 (Cucumber (B10) v3)
Descriptionstructure-specific endonuclease subunit slx1
Genome locationctg1837:617924..621297
RNA-Seq ExpressionCucsat.G12343
SyntenyCucsat.G12343
Gene Ontology termsGO:0000724 - double-strand break repair via homologous recombination (biological process)
GO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process)
GO:0033557 - Slx1-Slx4 complex (cellular component)
GO:0008821 - crossover junction endodeoxyribonuclease activity (molecular function)
GO:0017108 - 5'-flap endonuclease activity (molecular function)
InterPro domainsIPR000305 - GIY-YIG endonuclease
IPR035901 - GIY-YIG endonuclease superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004151512.1 structure-specific endonuclease subunit SLX1 [Cucumis sativus]6.89e-12098.82Show/hide
Query:  MRLLSHTFRCVKPPISNPPLSKSSSSSSKDPTLIVKSEPKPKLKQWCVYLIISSNSPIKTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACTIHG
        MRLLSHTFRCVKPPISNPPLSKSSSSSSKDPTLIVKSEPKPKLKQWCVYLIISSNSPIKTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACTIHG
Subjt:  MRLLSHTFRCVKPPISNPPLSKSSSSSSKDPTLIVKSEPKPKLKQWCVYLIISSNSPIKTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACTIHG

Query:  FKDQSQACEFESKWRKVSRKISYEKKEEDVGKQLDDQTLRLLKHRERALGKVKCLFDCSQFEFDWKLDPF
        FKDQSQACEFESKW+KVSRKISYEKKEEDVGK LDDQTLRLLKHRERALGKVKCLFDCSQFEFDWKLDPF
Subjt:  FKDQSQACEFESKWRKVSRKISYEKKEEDVGKQLDDQTLRLLKHRERALGKVKCLFDCSQFEFDWKLDPF

XP_008461838.1 PREDICTED: structure-specific endonuclease subunit slx1 [Cucumis melo]8.59e-10790.59Show/hide
Query:  MRLLSHTFRCVKPPISNPPLSKSSSSSSKDPTLIVKSEPKPKLKQWCVYLIISSNSPIKTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACTIHG
        MRLLS TFRC KPPISNP L KSSSSS+K PTLIVK E +PK KQWCVYLIISSNSPIKTYVGVTLDFDRRLKQHNGEIKGGAKAT+AGRPWICACTIHG
Subjt:  MRLLSHTFRCVKPPISNPPLSKSSSSSSKDPTLIVKSEPKPKLKQWCVYLIISSNSPIKTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACTIHG

Query:  FKDQSQACEFESKWRKVSRKISYEKKEEDVGKQLDDQTLRLLKHRERALGKVKCLFDCSQFEFDWKLDPF
        FKDQSQACEFESKW+KVSRKISYEKKE+DVGKQLD+QTLRLLKHR+RALGKVKCLFDCS FEFDWKLDPF
Subjt:  FKDQSQACEFESKWRKVSRKISYEKKEEDVGKQLDDQTLRLLKHRERALGKVKCLFDCSQFEFDWKLDPF

XP_022934184.1 structure-specific endonuclease subunit slx1 [Cucurbita moschata]3.16e-8778.7Show/hide
Query:  MRLLSHTFRCVKPPISNPPLSKSSSSSSKDPTLIVKSEPKPKLKQWCVYLIISSNSPIKTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACTIHG
        MRLLS TFR  K PIS+P +SKSSSSS+K PTLIVKSEP+PK  +WCVYLIISSN PIKTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICAC IHG
Subjt:  MRLLSHTFRCVKPPISNPPLSKSSSSSSKDPTLIVKSEPKPKLKQWCVYLIISSNSPIKTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACTIHG

Query:  FKDQSQACEFESKWRKVSRKISYEKKEEDVGKQLDDQTLRLLKHRERALGKVKCLFDCSQFEFDWKLDP
        FKDQSQACEFESKW+++ RK+ + +KEE     +DD TLRLLK R+RALGKVK LFDC+QFEFDW+LDP
Subjt:  FKDQSQACEFESKWRKVSRKISYEKKEEDVGKQLDDQTLRLLKHRERALGKVKCLFDCSQFEFDWKLDP

XP_022982643.1 structure-specific endonuclease subunit slx1 isoform X1 [Cucurbita maxima]3.16e-8777.65Show/hide
Query:  MRLLSHTFRCVKPPISNPPLSKSSSSSSKDPTLIVKSEPKPKLKQWCVYLIISSNSPIKTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACTIHG
        MRLLS TFR  K PIS+P +SKSSSSS+K PTL +KSE  P+ K+WCVYLIISSN PIKTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICAC IHG
Subjt:  MRLLSHTFRCVKPPISNPPLSKSSSSSSKDPTLIVKSEPKPKLKQWCVYLIISSNSPIKTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACTIHG

Query:  FKDQSQACEFESKWRKVSRKISYEKKEEDVGKQLDDQTLRLLKHRERALGKVKCLFDCSQFEFDWKLDPF
        FK+QSQACEFESKW+++ RK+S+ +KEE     +DDQTLRLLK R+RALGKVK LFDC+QFEFDW+LDPF
Subjt:  FKDQSQACEFESKWRKVSRKISYEKKEEDVGKQLDDQTLRLLKHRERALGKVKCLFDCSQFEFDWKLDPF

XP_038903984.1 structure-specific endonuclease subunit slx1 isoform X1 [Benincasa hispida]1.54e-10287.06Show/hide
Query:  MRLLSHTFRCVKPPISNPPLSKSSSSSSKDPTLIVKSEPKPKLKQWCVYLIISSNSPIKTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACTIHG
        MRLLS TFR  KP  SN  LSKSSSSS+KDP LIVKSEPKPK  QWCVYLIISSNSPIKTYVGVTLDFDRRLKQHNGEIKGGAKATR GRPW+CACTIHG
Subjt:  MRLLSHTFRCVKPPISNPPLSKSSSSSSKDPTLIVKSEPKPKLKQWCVYLIISSNSPIKTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACTIHG

Query:  FKDQSQACEFESKWRKVSRKISYEKKEEDVGKQLDDQTLRLLKHRERALGKVKCLFDCSQFEFDWKLDPF
        FKDQ QACEFESKW++VSRKISY+KKE+D+GKQ+DDQTLRLLKHR+RALGKVKCLFDCSQFEF+WKLDPF
Subjt:  FKDQSQACEFESKWRKVSRKISYEKKEEDVGKQLDDQTLRLLKHRERALGKVKCLFDCSQFEFDWKLDPF

TrEMBL top hitse value%identityAlignment
A0A0A0LCZ9 GIY-YIG domain-containing protein3.34e-12098.82Show/hide
Query:  MRLLSHTFRCVKPPISNPPLSKSSSSSSKDPTLIVKSEPKPKLKQWCVYLIISSNSPIKTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACTIHG
        MRLLSHTFRCVKPPISNPPLSKSSSSSSKDPTLIVKSEPKPKLKQWCVYLIISSNSPIKTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACTIHG
Subjt:  MRLLSHTFRCVKPPISNPPLSKSSSSSSKDPTLIVKSEPKPKLKQWCVYLIISSNSPIKTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACTIHG

Query:  FKDQSQACEFESKWRKVSRKISYEKKEEDVGKQLDDQTLRLLKHRERALGKVKCLFDCSQFEFDWKLDPF
        FKDQSQACEFESKW+KVSRKISYEKKEEDVGK LDDQTLRLLKHRERALGKVKCLFDCSQFEFDWKLDPF
Subjt:  FKDQSQACEFESKWRKVSRKISYEKKEEDVGKQLDDQTLRLLKHRERALGKVKCLFDCSQFEFDWKLDPF

A0A1S3CFH5 structure-specific endonuclease subunit slx14.16e-10790.59Show/hide
Query:  MRLLSHTFRCVKPPISNPPLSKSSSSSSKDPTLIVKSEPKPKLKQWCVYLIISSNSPIKTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACTIHG
        MRLLS TFRC KPPISNP L KSSSSS+K PTLIVK E +PK KQWCVYLIISSNSPIKTYVGVTLDFDRRLKQHNGEIKGGAKAT+AGRPWICACTIHG
Subjt:  MRLLSHTFRCVKPPISNPPLSKSSSSSSKDPTLIVKSEPKPKLKQWCVYLIISSNSPIKTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACTIHG

Query:  FKDQSQACEFESKWRKVSRKISYEKKEEDVGKQLDDQTLRLLKHRERALGKVKCLFDCSQFEFDWKLDPF
        FKDQSQACEFESKW+KVSRKISYEKKE+DVGKQLD+QTLRLLKHR+RALGKVKCLFDCS FEFDWKLDPF
Subjt:  FKDQSQACEFESKWRKVSRKISYEKKEEDVGKQLDDQTLRLLKHRERALGKVKCLFDCSQFEFDWKLDPF

A0A6J1DGL6 structure-specific endonuclease subunit SLX11.23e-8370.43Show/hide
Query:  FEPAPKKRNQRKNMRLLSHTFRCVKPPISNPPLSKSSSSSSKDP---TLIVKSEPKPKLKQWCVYLIISSNSPIKTYVGVTLDFDRRLKQHNGEIKGGAK
        F    ++R  R+ MRLLSHTFRC K PISNP    SSSSS+KDP   TL  +S+ KPK   WCVYLIISSNSP KTYVGVTL+F RRLKQHNGEIKGGAK
Subjt:  FEPAPKKRNQRKNMRLLSHTFRCVKPPISNPPLSKSSSSSSKDP---TLIVKSEPKPKLKQWCVYLIISSNSPIKTYVGVTLDFDRRLKQHNGEIKGGAK

Query:  ATRAGRPWICACTIHGFKDQSQACEFESKWRKVSRKISYEKKEEDVGKQLDDQTLRLLKHRERALGKVKCLFDCSQFEFDWKLDPF
        ATRAGRPW+CAC IHGFKDQSQACEFESKW++VSRKI++++K++D  +Q D+Q LRLLK+R+RAL KVK +FDCS+FEFD +LDPF
Subjt:  ATRAGRPWICACTIHGFKDQSQACEFESKWRKVSRKISYEKKEEDVGKQLDDQTLRLLKHRERALGKVKCLFDCSQFEFDWKLDPF

A0A6J1F1V2 structure-specific endonuclease subunit slx11.53e-8778.7Show/hide
Query:  MRLLSHTFRCVKPPISNPPLSKSSSSSSKDPTLIVKSEPKPKLKQWCVYLIISSNSPIKTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACTIHG
        MRLLS TFR  K PIS+P +SKSSSSS+K PTLIVKSEP+PK  +WCVYLIISSN PIKTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICAC IHG
Subjt:  MRLLSHTFRCVKPPISNPPLSKSSSSSSKDPTLIVKSEPKPKLKQWCVYLIISSNSPIKTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACTIHG

Query:  FKDQSQACEFESKWRKVSRKISYEKKEEDVGKQLDDQTLRLLKHRERALGKVKCLFDCSQFEFDWKLDP
        FKDQSQACEFESKW+++ RK+ + +KEE     +DD TLRLLK R+RALGKVK LFDC+QFEFDW+LDP
Subjt:  FKDQSQACEFESKWRKVSRKISYEKKEEDVGKQLDDQTLRLLKHRERALGKVKCLFDCSQFEFDWKLDP

A0A6J1J5C9 structure-specific endonuclease subunit slx1 isoform X11.53e-8777.65Show/hide
Query:  MRLLSHTFRCVKPPISNPPLSKSSSSSSKDPTLIVKSEPKPKLKQWCVYLIISSNSPIKTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACTIHG
        MRLLS TFR  K PIS+P +SKSSSSS+K PTL +KSE  P+ K+WCVYLIISSN PIKTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICAC IHG
Subjt:  MRLLSHTFRCVKPPISNPPLSKSSSSSSKDPTLIVKSEPKPKLKQWCVYLIISSNSPIKTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACTIHG

Query:  FKDQSQACEFESKWRKVSRKISYEKKEEDVGKQLDDQTLRLLKHRERALGKVKCLFDCSQFEFDWKLDPF
        FK+QSQACEFESKW+++ RK+S+ +KEE     +DDQTLRLLK R+RALGKVK LFDC+QFEFDW+LDPF
Subjt:  FKDQSQACEFESKWRKVSRKISYEKKEEDVGKQLDDQTLRLLKHRERALGKVKCLFDCSQFEFDWKLDPF

SwissProt top hitse value%identityAlignment
A8PWH1 Structure-specific endonuclease subunit SLX11.3e-0944.12Show/hide
Query:  YLIISSNSPIKTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACTIHGFKDQSQACEFESKWRK
        Y + S + P +TY+G T D  RRL+QHNG +K GA  TR  RPW     ++GF  +  A +FE  W+K
Subjt:  YLIISSNSPIKTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACTIHGFKDQSQACEFESKWRK

B6JY16 Structure-specific endonuclease subunit slx14.3e-1347.89Show/hide
Query:  WCVYLIISSNSPIKT-YVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACTIHGFKDQSQACEFESKWR
        +C YL++S  +  ++ Y+G T D  RRL+QHNGEIKGGA  T+  RPW  AC +HGF  +  A +FE  W+
Subjt:  WCVYLIISSNSPIKT-YVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACTIHGFKDQSQACEFESKWR

B6QFH5 Structure-specific endonuclease subunit slx11.5e-1044.44Show/hide
Query:  PKPKLKQWCVYLIISSNSPIKTYVGVTLDFDRRLKQHNGEIKGGAKATRAG--RPWICACTIHGFKDQSQACEFESKWRKV
        PKP    +C YL+ S   P   Y+G T D  RRL+QHNG  KGGAK T     RPW     I GF  ++ A +FE  W+ V
Subjt:  PKPKLKQWCVYLIISSNSPIKTYVGVTLDFDRRLKQHNGEIKGGAKATRAG--RPWICACTIHGFKDQSQACEFESKWRKV

B8MDD1 Structure-specific endonuclease subunit slx14.5e-1042.5Show/hide
Query:  KPKLKQWCVYLIISSNSPIKTYVGVTLDFDRRLKQHNGEIKGGAKATRAG--RPWICACTIHGFKDQSQACEFESKWRKV
        KP    +C YL+ S+  P   Y+G T D  RRL+QHNG  KGGAK T     RPW     + GF  ++ A +FE  W+ V
Subjt:  KPKLKQWCVYLIISSNSPIKTYVGVTLDFDRRLKQHNGEIKGGAKATRAG--RPWICACTIHGFKDQSQACEFESKWRKV

Q9P7M3 Structure-specific endonuclease subunit slx16.2e-1244.59Show/hide
Query:  WCVYLIIS--SNSPIKTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACTIHGFKDQSQACEFESKWRKV
        +C YL+ S  + S    Y+G T D  RRL+QHNGEI GGA  T+ GRPW  +C ++GF ++  A +FE  W+ +
Subjt:  WCVYLIIS--SNSPIKTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACTIHGFKDQSQACEFESKWRKV

Arabidopsis top hitse value%identityAlignment
AT2G30350.2 Excinuclease ABC, C subunit, N-terminal1.5e-0843.86Show/hide
Query:  KTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACTIHGFKDQSQACEFESKWR
        +TY+G T++  RR++QHNGEI  GA  T+  RPW     I+GF     A +FE  W+
Subjt:  KTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACTIHGFKDQSQACEFESKWR

AT5G43210.1 Excinuclease ABC, C subunit, N-terminal2.9e-4153.18Show/hide
Query:  RLLSHTFRCVKPPISNP--PLSKSSSSSSKDPTLIVKSEPK-----PKLKQWCVYLIISSNSPIKTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWIC
        RLLS TF  VK   SNP  P  K+  +S     +   S P+     PK K W VYLI+S+  PIKTYVG+T DF RRLKQHNGEI+GGAKA+ AGRPW+C
Subjt:  RLLSHTFRCVKPPISNP--PLSKSSSSSSKDPTLIVKSEPK-----PKLKQWCVYLIISSNSPIKTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWIC

Query:  ACTIHGFKDQSQACEFESKWRKVSRKISYEKKEEDVGKQLDDQTLRLLKHRERALGKVKCLFDCSQFEFDWKL
        AC I GF   SQA  FESKW+  +RK+   KK+ED+      Q+  LL+HR RAL KV+   DCS  E DWK+
Subjt:  ACTIHGFKDQSQACEFESKWRKVSRKISYEKKEEDVGKQLDDQTLRLLKHRERALGKVKCLFDCSQFEFDWKL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TTCTTTTTTAGGAAAACTTGGAGTTTCGAACCCGCGCCTAAGAAGAGGAACCAAAGAAAGAATATGAGATTGCTCTCTCACACATTTCGTTGTGTAAAACCCCCAATTTC
AAATCCACCACTATCCAAATCTTCTTCTTCCTCATCTAAGGATCCAACACTGATCGTTAAATCAGAGCCGAAGCCTAAGCTTAAGCAATGGTGTGTTTATCTCATCATCT
CCTCCAATTCTCCCATCAAAACCTATGTAGGGGTCACCCTTGACTTCGATCGACGTTTGAAACAACATAATGGTGAAATAAAAGGTGGTGCAAAAGCAACTCGAGCGGGA
CGACCCTGGATTTGTGCGTGCACAATTCATGGTTTTAAAGACCAAAGTCAAGCTTGTGAGTTTGAATCAAAATGGAGAAAAGTTTCAAGGAAAATATCCTATGAGAAGAA
GGAGGAGGATGTGGGAAAGCAATTAGATGATCAAACATTAAGATTGCTGAAGCACAGGGAAAGAGCTTTAGGAAAAGTGAAGTGTCTGTTTGATTGCAGTCAATTTGAGT
TTGATTGGAAATTGGATCCTTTCTGA
mRNA sequenceShow/hide mRNA sequence
TTCTTTTTTAGGAAAACTTGGAGTTTCGAACCCGCGCCTAAGAAGAGGAACCAAAGAAAGAATATGAGATTGCTCTCTCACACATTTCGTTGTGTAAAACCCCCAATTTC
AAATCCACCACTATCCAAATCTTCTTCTTCCTCATCTAAGGATCCAACACTGATCGTTAAATCAGAGCCGAAGCCTAAGCTTAAGCAATGGTGTGTTTATCTCATCATCT
CCTCCAATTCTCCCATCAAAACCTATGTAGGGGTCACCCTTGACTTCGATCGACGTTTGAAACAACATAATGGTGAAATAAAAGGTGGTGCAAAAGCAACTCGAGCGGGA
CGACCCTGGATTTGTGCGTGCACAATTCATGGTTTTAAAGACCAAAGTCAAGCTTGTGAGTTTGAATCAAAATGGAGAAAAGTTTCAAGGAAAATATCCTATGAGAAGAA
GGAGGAGGATGTGGGAAAGCAATTAGATGATCAAACATTAAGATTGCTGAAGCACAGGGAAAGAGCTTTAGGAAAAGTGAAGTGTCTGTTTGATTGCAGTCAATTTGAGT
TTGATTGGAAATTGGATCCTTTCTGA
Protein sequenceShow/hide protein sequence
FFFRKTWSFEPAPKKRNQRKNMRLLSHTFRCVKPPISNPPLSKSSSSSSKDPTLIVKSEPKPKLKQWCVYLIISSNSPIKTYVGVTLDFDRRLKQHNGEIKGGAKATRAG
RPWICACTIHGFKDQSQACEFESKWRKVSRKISYEKKEEDVGKQLDDQTLRLLKHRERALGKVKCLFDCSQFEFDWKLDPF