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Cucsat.G12444 (gene) of Cucumber (B10) v3 genome

Gene IDCucsat.G12444
OrganismCucumis sativus L. var. sativus cv. B10 (Cucumber (B10) v3)
Descriptionlight-harvesting complex-like protein OHP1, chloroplastic
Genome locationctg1837:2447216..2448650
RNA-Seq ExpressionCucsat.G12444
SyntenyCucsat.G12444
Gene Ontology termsGO:0009535 - chloroplast thylakoid membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004137791.1 light-harvesting complex-like protein OHP1, chloroplastic [Cucumis sativus]6.02e-6298.99Show/hide
Query:  MASSSVILSSLPPARALTCNHQDSRHCLFQIGYSVRANSSRARTSFRIQAAAKPPAGVELPKVEPKFQAPFLGFTKTAEIWNSRACMIGLIGIFVVELV
        MASSSVILSSLPPARALTCNHQDSRHCLFQIGYSVRANSSRARTSFRIQAAAKPPAGVELPKVEPKFQAPFLGFTKTAEIWNSRACMIGLIGIFVVEL+
Subjt:  MASSSVILSSLPPARALTCNHQDSRHCLFQIGYSVRANSSRARTSFRIQAAAKPPAGVELPKVEPKFQAPFLGFTKTAEIWNSRACMIGLIGIFVVELV
XP_008442523.1 PREDICTED: high-light-induced protein, chloroplastic [Cucumis melo]1.69e-5288.89Show/hide
Query:  MASSSVILSSLPPARALTCNHQDSRHCLFQIGYSVRANSSRARTSFRIQAAAKPPAGVELPKVEPKFQAPFLGFTKTAEIWNSRACMIGLIGIFVVELV
        MASSSVILSSLPPARALT N QD RH LFQIG SVRAN+SRAR SFR+QAAAKPPAGVELPKVEPKF+APFLGFTKTAEIWNSRACMIGLIG FVVEL+
Subjt:  MASSSVILSSLPPARALTCNHQDSRHCLFQIGYSVRANSSRARTSFRIQAAAKPPAGVELPKVEPKFQAPFLGFTKTAEIWNSRACMIGLIGIFVVELV
XP_022145630.1 light-harvesting complex-like protein OHP1, chloroplastic [Momordica charantia]6.06e-4179Show/hide
Query:  MASSSVILSS-LPPARALTCNHQDSRHCLFQIGYSVRANSSRARTSFRIQAAAKPPAGVELPKVEPKFQAPFLGFTKTAEIWNSRACMIGLIGIFVVELV
        MASSS +LSS L PARA T N QD R CLFQIG SVRAN+SRAR  FR+QAA K PAGVELPKVEPKF+APFLGFTKTAEIWNSRACM+GL+GIF+VEL+
Subjt:  MASSSVILSS-LPPARALTCNHQDSRHCLFQIGYSVRANSSRARTSFRIQAAAKPPAGVELPKVEPKFQAPFLGFTKTAEIWNSRACMIGLIGIFVVELV
XP_022934608.1 light-harvesting complex-like protein OHP1, chloroplastic [Cucurbita moschata]1.73e-4078Show/hide
Query:  MASSSVILSS-LPPARALTCNHQDSRHCLFQIGYSVRANSSRARTSFRIQAAAKPPAGVELPKVEPKFQAPFLGFTKTAEIWNSRACMIGLIGIFVVELV
        MASS+ ILSS L PARA  C+ QD R CLFQ+G SVRAN+ RAR  FR+QAA KPPAGVELPKV+PKF+APFLGFTKTAEIWNSRA MIGLIGIFVVEL+
Subjt:  MASSSVILSS-LPPARALTCNHQDSRHCLFQIGYSVRANSSRARTSFRIQAAAKPPAGVELPKVEPKFQAPFLGFTKTAEIWNSRACMIGLIGIFVVELV
XP_038905156.1 light-harvesting complex-like protein OHP1, chloroplastic [Benincasa hispida]3.16e-4381Show/hide
Query:  MASSSVILSS-LPPARALTCNHQDSRHCLFQIGYSVRANSSRARTSFRIQAAAKPPAGVELPKVEPKFQAPFLGFTKTAEIWNSRACMIGLIGIFVVELV
        MASSS ILSS L PARA  C+ QD R CLFQIG SVRAN+SR+R  FR+QAA KPPAGVELPKVEPKF+APFLGFTKTAE+WNSRACMIGLIGIFVVEL+
Subjt:  MASSSVILSS-LPPARALTCNHQDSRHCLFQIGYSVRANSSRARTSFRIQAAAKPPAGVELPKVEPKFQAPFLGFTKTAEIWNSRACMIGLIGIFVVELV
TrEMBL top hitse value%identityAlignment
A0A0A0LAI0 Uncharacterized protein2.92e-6298.99Show/hide
Query:  MASSSVILSSLPPARALTCNHQDSRHCLFQIGYSVRANSSRARTSFRIQAAAKPPAGVELPKVEPKFQAPFLGFTKTAEIWNSRACMIGLIGIFVVELV
        MASSSVILSSLPPARALTCNHQDSRHCLFQIGYSVRANSSRARTSFRIQAAAKPPAGVELPKVEPKFQAPFLGFTKTAEIWNSRACMIGLIGIFVVEL+
Subjt:  MASSSVILSSLPPARALTCNHQDSRHCLFQIGYSVRANSSRARTSFRIQAAAKPPAGVELPKVEPKFQAPFLGFTKTAEIWNSRACMIGLIGIFVVELV
A0A1S3B5V9 high-light-induced protein, chloroplastic8.16e-5388.89Show/hide
Query:  MASSSVILSSLPPARALTCNHQDSRHCLFQIGYSVRANSSRARTSFRIQAAAKPPAGVELPKVEPKFQAPFLGFTKTAEIWNSRACMIGLIGIFVVELV
        MASSSVILSSLPPARALT N QD RH LFQIG SVRAN+SRAR SFR+QAAAKPPAGVELPKVEPKF+APFLGFTKTAEIWNSRACMIGLIG FVVEL+
Subjt:  MASSSVILSSLPPARALTCNHQDSRHCLFQIGYSVRANSSRARTSFRIQAAAKPPAGVELPKVEPKFQAPFLGFTKTAEIWNSRACMIGLIGIFVVELV
A0A5A7TRS8 High-light-induced protein8.16e-5388.89Show/hide
Query:  MASSSVILSSLPPARALTCNHQDSRHCLFQIGYSVRANSSRARTSFRIQAAAKPPAGVELPKVEPKFQAPFLGFTKTAEIWNSRACMIGLIGIFVVELV
        MASSSVILSSLPPARALT N QD RH LFQIG SVRAN+SRAR SFR+QAAAKPPAGVELPKVEPKF+APFLGFTKTAEIWNSRACMIGLIG FVVEL+
Subjt:  MASSSVILSSLPPARALTCNHQDSRHCLFQIGYSVRANSSRARTSFRIQAAAKPPAGVELPKVEPKFQAPFLGFTKTAEIWNSRACMIGLIGIFVVELV
A0A6J1CV10 light-harvesting complex-like protein OHP1, chloroplastic2.93e-4179Show/hide
Query:  MASSSVILSS-LPPARALTCNHQDSRHCLFQIGYSVRANSSRARTSFRIQAAAKPPAGVELPKVEPKFQAPFLGFTKTAEIWNSRACMIGLIGIFVVELV
        MASSS +LSS L PARA T N QD R CLFQIG SVRAN+SRAR  FR+QAA K PAGVELPKVEPKF+APFLGFTKTAEIWNSRACM+GL+GIF+VEL+
Subjt:  MASSSVILSS-LPPARALTCNHQDSRHCLFQIGYSVRANSSRARTSFRIQAAAKPPAGVELPKVEPKFQAPFLGFTKTAEIWNSRACMIGLIGIFVVELV
A0A6J1J0W8 light-harvesting complex-like protein OHP1, chloroplastic8.39e-4178Show/hide
Query:  MASSSVILSS-LPPARALTCNHQDSRHCLFQIGYSVRANSSRARTSFRIQAAAKPPAGVELPKVEPKFQAPFLGFTKTAEIWNSRACMIGLIGIFVVELV
        MASS+ ILSS L PARA  C+ QD R CLFQ+G SVRAN+ RAR  FR+QAA KPPAGVELPKV+PKF+APFLGFTKTAEIWNSRA MIGLIGIFVVEL+
Subjt:  MASSSVILSS-LPPARALTCNHQDSRHCLFQIGYSVRANSSRARTSFRIQAAAKPPAGVELPKVEPKFQAPFLGFTKTAEIWNSRACMIGLIGIFVVELV
SwissProt top hitse value%identityAlignment
O81208 Light-harvesting complex-like protein OHP1, chloroplastic2.9e-1373.47Show/hide
Query:  AAKPPAGVELPKVEPKFQAPFLGFTKTAEIWNSRACMIGLIGIFVVELV
        AAK P GV +PK +PK Q  FLGFT+TAEIWNSRACMIGLIG F+VEL+
Subjt:  AAKPPAGVELPKVEPKFQAPFLGFTKTAEIWNSRACMIGLIGIFVVELV
Arabidopsis top hitse value%identityAlignment
AT5G02120.1 one helix protein2.1e-1473.47Show/hide
Query:  AAKPPAGVELPKVEPKFQAPFLGFTKTAEIWNSRACMIGLIGIFVVELV
        AAK P GV +PK +PK Q  FLGFT+TAEIWNSRACMIGLIG F+VEL+
Subjt:  AAKPPAGVELPKVEPKFQAPFLGFTKTAEIWNSRACMIGLIGIFVVELV

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGTCCTCCTCTGTGATTTTATCTTCTCTTCCTCCGGCCAGAGCTCTGACTTGTAACCATCAAGACAGTCGCCACTGTCTCTTTCAAATTGGGTATTCCGTCCGTGC
CAATAGCAGCAGGGCTCGTACCTCTTTCAGGATTCAGGCCGCCGCAAAGCCTCCGGCTGGAGTTGAATTGCCAAAAGTAGAGCCGAAATTTCAAGCCCCGTTTCTTGGCT
TCACTAAAACTGCTGAAATCTGGAATTCTAGAGCCTGCATGATAGGCCTTATTGGGATTTTCGTAGTGGAGCTGGTGAGGTTTTCTTTTCTTTTTAGTATGAAGAAAACT
TTCTATCTTGTACCTTTACTACCCATGTTTACGGGTTTTATCTGTCTGCTTTTTCAG
mRNA sequenceShow/hide mRNA sequence
ATGGCGTCCTCCTCTGTGATTTTATCTTCTCTTCCTCCGGCCAGAGCTCTGACTTGTAACCATCAAGACAGTCGCCACTGTCTCTTTCAAATTGGGTATTCCGTCCGTGC
CAATAGCAGCAGGGCTCGTACCTCTTTCAGGATTCAGGCCGCCGCAAAGCCTCCGGCTGGAGTTGAATTGCCAAAAGTAGAGCCGAAATTTCAAGCCCCGTTTCTTGGCT
TCACTAAAACTGCTGAAATCTGGAATTCTAGAGCCTGCATGATAGGCCTTATTGGGATTTTCGTAGTGGAGCTGGTGAGGTTTTCTTTTCTTTTTAGTATGAAGAAAACT
TTCTATCTTGTACCTTTACTACCCATGTTTACGGGTTTTATCTGTCTGCTTTTTCAG
Protein sequenceShow/hide protein sequence
MASSSVILSSLPPARALTCNHQDSRHCLFQIGYSVRANSSRARTSFRIQAAAKPPAGVELPKVEPKFQAPFLGFTKTAEIWNSRACMIGLIGIFVVELVRFSFLFSMKKT
FYLVPLLPMFTGFICLLFQ