; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cucsat.G12538 (gene) of Cucumber (B10) v3 genome

Gene IDCucsat.G12538
OrganismCucumis sativus L. var. sativus cv. B10 (Cucumber (B10) v3)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationctg1837:1159804..1160883
RNA-Seq ExpressionCucsat.G12538
SyntenyCucsat.G12538
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR013103 - Reverse transcriptase, RNA-dependent DNA polymerase
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TYK30390.1 putative mitochondrial protein [Cucumis melo var. makuwa]1.61e-19879.11Show/hide
Query:  VYMKPPQGTSPPPNK--------------------------------------------TTHGIVLLLLYVDDMIITGNDQQAISDLQQYLGQHFEMKDL
        +YMKPP GTS PP+K                                            T  GIVLLLLYVDDMIITGND QAISDLQ YLGQHFEMKDL
Subjt:  VYMKPPQGTSPPPNK--------------------------------------------TTHGIVLLLLYVDDMIITGNDQQAISDLQQYLGQHFEMKDL

Query:  GSLNYFLGLEVSPRSDGYLLSQAKYASDLIARSGITDSTTSPTPLDPHVHLTSFDGVPLDDASLYRQLVGSLIYLTVTRPDIAYAVHIVSQFMAAPRTIH
        GSLNYFLGLEVS RSDGYLLSQAKYASDL+ARSGITDS T+ TPLDP+VHLT +DGVPL++ SLYRQLVGSLIYLTVTRPDI YAVHIVSQFMAAPRTIH
Subjt:  GSLNYFLGLEVSPRSDGYLLSQAKYASDLIARSGITDSTTSPTPLDPHVHLTSFDGVPLDDASLYRQLVGSLIYLTVTRPDIAYAVHIVSQFMAAPRTIH

Query:  FTAVLRILRYVKGTLGHGLQFSSQSSLVLSGYSDADWAGDPTDRRSTTGYCFYLGDSLISWRSKKQSVISRSSTESEYRALADATAELIWLRWLLADMGV
        FTAVLRILRY+KGTLGHGLQFSSQSSLVLSGYSDADWAGDPTDRRSTTGYCFYLGDSLISWRSKKQSV+SRSSTESEYRALAD TAEL+WL WLLADMGV
Subjt:  FTAVLRILRYVKGTLGHGLQFSSQSSLVLSGYSDADWAGDPTDRRSTTGYCFYLGDSLISWRSKKQSVISRSSTESEYRALADATAELIWLRWLLADMGV

Query:  PQQGPTLLHCDNRSAIQIAHNDVFHERTKHIENDCHFVRHHLLSNTLLLRSVSTIEQPA
        PQQGPTLL+CDNRSAIQIAHNDVFHERTKHIENDCHF+RHHLLSNTLLL+ VST +QPA
Subjt:  PQQGPTLLHCDNRSAIQIAHNDVFHERTKHIENDCHFVRHHLLSNTLLLRSVSTIEQPA

XP_031737568.1 uncharacterized protein LOC116402459 [Cucumis sativus]6.89e-19892.69Show/hide
Query:  NKTTHGIVLLLLYVDDMIITGNDQQAISDLQQYLGQHFEMKDLGSLNYFLGLEVSPRSDGYLLSQAKYASDLIARSGITDSTTSPTPLDPHVHLTSFDGV
         +T HGIVLLLLYVDDMIIT ND QAISDLQQYLGQHFEMKDLGSL+YFL LEVS RSDGYLLSQAKYASDLIARSGITDS TS TPLDPHVHLT FDGV
Subjt:  NKTTHGIVLLLLYVDDMIITGNDQQAISDLQQYLGQHFEMKDLGSLNYFLGLEVSPRSDGYLLSQAKYASDLIARSGITDSTTSPTPLDPHVHLTSFDGV

Query:  PLDDASLYRQLVGSLIYLTVTRPDIAYAVHIVSQFMAAPRTIHFTAVLRILRYVKGTL-GHGLQFSSQSSLVLSGYSDADWAGDPTDRRSTTGYCFYLGD
        PLDDASLYRQLVGSLIYLTVTRPDIAY VHIVSQFMAAPRT+HFT VLRILRYVK TL GHGLQFSSQSSLVLSGYSDADW GDPTDR+STTGYCFYLGD
Subjt:  PLDDASLYRQLVGSLIYLTVTRPDIAYAVHIVSQFMAAPRTIHFTAVLRILRYVKGTL-GHGLQFSSQSSLVLSGYSDADWAGDPTDRRSTTGYCFYLGD

Query:  SLISWRSKKQSVISRSSTESEYRALADATAELIWLRWLLADMGVPQQGPTLLHCDNRSAIQIAHNDVFHERTKHIENDCHFVRHHLLSNTLLLRSVSTIE
        SLISWRSKKQSVISRSST+SEYRALADATAELIWLRWLLADM VPQQGPTLLHCDNRS IQIAHNDVFHERTKHI+NDCHFVRHHLLSNTLLLRSVSTIE
Subjt:  SLISWRSKKQSVISRSSTESEYRALADATAELIWLRWLLADMGVPQQGPTLLHCDNRSAIQIAHNDVFHERTKHIENDCHFVRHHLLSNTLLLRSVSTIE

Query:  Q
        Q
Subjt:  Q

XP_031737953.1 uncharacterized protein LOC116402584 [Cucumis sativus]2.95e-21586.35Show/hide
Query:  VYMKPPQGTSPPPNK--------------------------------------------TTHGIVLLLLYVDDMIITGNDQQAISDLQQYLGQHFEMKDL
        VYMKPPQGTSPPPNK                                            TTHGIVLLLLYVDDMIITGNDQQAISDLQQYLGQHFEMKDL
Subjt:  VYMKPPQGTSPPPNK--------------------------------------------TTHGIVLLLLYVDDMIITGNDQQAISDLQQYLGQHFEMKDL

Query:  GSLNYFLGLEVSPRSDGYLLSQAKYASDLIARSGITDSTTSPTPLDPHVHLTSFDGVPLDDASLYRQLVGSLIYLTVTRPDIAYAVHIVSQFMAAPRTIH
        GSLNYFLGLEVS RSDGYLLSQAKYASDLIARSGITDSTTS TPLDPHVHLT FDGVPLDDASLYRQLVGSLIYLTVTRPDIAYAVHIVSQFMAAPRTIH
Subjt:  GSLNYFLGLEVSPRSDGYLLSQAKYASDLIARSGITDSTTSPTPLDPHVHLTSFDGVPLDDASLYRQLVGSLIYLTVTRPDIAYAVHIVSQFMAAPRTIH

Query:  FTAVLRILRYVKGTLGHGLQFSSQSSLVLSGYSDADWAGDPTDRRSTTGYCFYLGDSLISWRSKKQSVISRSSTESEYRALADATAELIWLRWLLADMGV
        FTAVLRILRYVKGTLGHGLQFSSQSSLVLSGYSDADWAGDPTDRRSTTGYCFYLGDSLISWRSKKQSVISRSSTESEYRALADATAELIWLRWLLADMGV
Subjt:  FTAVLRILRYVKGTLGHGLQFSSQSSLVLSGYSDADWAGDPTDRRSTTGYCFYLGDSLISWRSKKQSVISRSSTESEYRALADATAELIWLRWLLADMGV

Query:  PQQGPTLLHCDNRSAIQIAHNDVFHERTKHIENDCHFVRHHLLSNTLLLRSVSTIEQPA
        PQQGPTLLHCDNRSAIQIAHNDVFHERTKHIENDCHF RHHLLSNTLLL SVSTIEQPA
Subjt:  PQQGPTLLHCDNRSAIQIAHNDVFHERTKHIENDCHFVRHHLLSNTLLLRSVSTIEQPA

XP_031741718.1 uncharacterized protein LOC116403914 [Cucumis sativus]1.29e-20195.92Show/hide
Query:  LLLLYVDDMIITGNDQQAISDLQQYLGQHFEMKDLGSLNYFLGLEVSPRSDGYLLSQAKYASDLIARSGITDSTTSPTPLDPHVHLTSFDGVPLDDASLY
        ++L +   MIITGND QAISDLQQYLGQHFEMKDLGSLNYFLGLEVS RSDGYLLSQAKYASDLIARSGITDSTTS TPLDPHVHLT FDGVPLDDASLY
Subjt:  LLLLYVDDMIITGNDQQAISDLQQYLGQHFEMKDLGSLNYFLGLEVSPRSDGYLLSQAKYASDLIARSGITDSTTSPTPLDPHVHLTSFDGVPLDDASLY

Query:  RQLVGSLIYLTVTRPDIAYAVHIVSQFMAAPRTIHFTAVLRILRYVKGTLGHGLQFSSQSSLVLSGYSDADWAGDPTDRRSTTGYCFYLGDSLISWRSKK
        RQLVGSLIYLTVTRPDIAY VHIVSQFMAAPRTIHFTAVLRILRYVKGTLGHGLQFSSQSSLVLSGYSDADWAGDPTDRRSTTGYCFYLGDSLISWRSKK
Subjt:  RQLVGSLIYLTVTRPDIAYAVHIVSQFMAAPRTIHFTAVLRILRYVKGTLGHGLQFSSQSSLVLSGYSDADWAGDPTDRRSTTGYCFYLGDSLISWRSKK

Query:  QSVISRSSTESEYRALADATAELIWLRWLLADMGVPQQGPTLLHCDNRSAIQIAHNDVFHERTKHIENDCHFVRHHLLSNTLLLRSVSTIEQPA
        QSVISRSSTESEYRALADATAELIWLRWLLADMGVPQQGPTLLHCDNRSAIQIAHNDVFHERTKHIENDCHFVRHHLLSNTLLLRSVSTIEQPA
Subjt:  QSVISRSSTESEYRALADATAELIWLRWLLADMGVPQQGPTLLHCDNRSAIQIAHNDVFHERTKHIENDCHFVRHHLLSNTLLLRSVSTIEQPA

XP_031742866.1 uncharacterized protein LOC116404492 [Cucumis sativus]1.53e-21398.99Show/hide
Query:  MKPPQGTSPPPNKTTHGIVLLLLYVDDMIITGNDQQAISDLQQYLGQHFEMKDLGSLNYFLGLEVSPRSDGYLLSQAKYASDLIARSGITDSTTSPTPLD
        MKPPQGTSPPPNKTTHGIVLLLLYVDDMIITGNDQQAISDLQQYLGQHFEMKDLGSLNYFLGLEVS RSDGYLLSQAKYASDLIARSGITDSTTS TPLD
Subjt:  MKPPQGTSPPPNKTTHGIVLLLLYVDDMIITGNDQQAISDLQQYLGQHFEMKDLGSLNYFLGLEVSPRSDGYLLSQAKYASDLIARSGITDSTTSPTPLD

Query:  PHVHLTSFDGVPLDDASLYRQLVGSLIYLTVTRPDIAYAVHIVSQFMAAPRTIHFTAVLRILRYVKGTLGHGLQFSSQSSLVLSGYSDADWAGDPTDRRS
        PHVHLT FDGVPLDDASLYRQLVGSLIYLTVTRPDIAYAVHIVSQFMAAPRTIHFTAVLRILRYVKGTLGHGLQFSSQSSLVLSGYSDADWAGDPTDRRS
Subjt:  PHVHLTSFDGVPLDDASLYRQLVGSLIYLTVTRPDIAYAVHIVSQFMAAPRTIHFTAVLRILRYVKGTLGHGLQFSSQSSLVLSGYSDADWAGDPTDRRS

Query:  TTGYCFYLGDSLISWRSKKQSVISRSSTESEYRALADATAELIWLRWLLADMGVPQQGPTLLHCDNRSAIQIAHNDVFHERTKHIENDCHFVRHHLL
        TTGYCFYLGDSLISWRSKKQSVISRSSTESEYRALADATAELIWLRWLLADMGVPQQGPTLLHCDNRSAIQIAHNDVFHERTKHIENDCHFVRHHLL
Subjt:  TTGYCFYLGDSLISWRSKKQSVISRSSTESEYRALADATAELIWLRWLLADMGVPQQGPTLLHCDNRSAIQIAHNDVFHERTKHIENDCHFVRHHLL

TrEMBL top hitse value%identityAlignment
A0A1S4E5D2 uncharacterized mitochondrial protein AtMg00810-like3.08e-19678.55Show/hide
Query:  VYMKPPQGTSPPPNK--------------------------------------------TTHGIVLLLLYVDDMIITGNDQQAISDLQQYLGQHFEMKDL
        VYMKPP GTS PP+K                                            T  GIVLLLLYVDDMIITGND QAISDLQ YLGQHFEMKDL
Subjt:  VYMKPPQGTSPPPNK--------------------------------------------TTHGIVLLLLYVDDMIITGNDQQAISDLQQYLGQHFEMKDL

Query:  GSLNYFLGLEVSPRSDGYLLSQAKYASDLIARSGITDSTTSPTPLDPHVHLTSFDGVPLDDASLYRQLVGSLIYLTVTRPDIAYAVHIVSQFMAAPRTIH
        GSLNYFLGLEVS RSDGYLLSQAKY SDL+ARSGITDS T+ TPLDP+VHLT +DGVPL++ S YRQLVGSLIYLTVT P IAYAVHIVSQFMA PRTIH
Subjt:  GSLNYFLGLEVSPRSDGYLLSQAKYASDLIARSGITDSTTSPTPLDPHVHLTSFDGVPLDDASLYRQLVGSLIYLTVTRPDIAYAVHIVSQFMAAPRTIH

Query:  FTAVLRILRYVKGTLGHGLQFSSQSSLVLSGYSDADWAGDPTDRRSTTGYCFYLGDSLISWRSKKQSVISRSSTESEYRALADATAELIWLRWLLADMGV
        FTAVLRILRY+KGTLGHGLQFSSQSSLVLSGYSDADWAGDPTDRRSTTGYCFYLGDSLISWRSKKQSV+SRSST+SEYRALAD TAEL+WLRWLLADMGV
Subjt:  FTAVLRILRYVKGTLGHGLQFSSQSSLVLSGYSDADWAGDPTDRRSTTGYCFYLGDSLISWRSKKQSVISRSSTESEYRALADATAELIWLRWLLADMGV

Query:  PQQGPTLLHCDNRSAIQIAHNDVFHERTKHIENDCHFVRHHLLSNTLLLRSVSTIEQPA
        PQQGPTLL+CDNRSAIQIAHNDVFHERTKHIENDCHF+RHHLLSNTLLL+ VST EQPA
Subjt:  PQQGPTLLHCDNRSAIQIAHNDVFHERTKHIENDCHFVRHHLLSNTLLLRSVSTIEQPA

A0A5A7U2E5 Putative mitochondrial protein5.29e-19579.39Show/hide
Query:  VYMKPPQGTSPPPNK--------------------------------------------TTHGIVLLLLYVDDMIITGNDQQAISDLQQYLGQHFEMKDL
        VYMKP  GTS PP+K                                            T  GIVLLLLYVDDMIITGND QAISDLQ YLGQHFEMKDL
Subjt:  VYMKPPQGTSPPPNK--------------------------------------------TTHGIVLLLLYVDDMIITGNDQQAISDLQQYLGQHFEMKDL

Query:  GSLNYFLGLEVSPRSDGYLLSQAKYASDLIARSGITDSTTSPTPLDPHVHLTSFDGVPLDDASLYRQLVGSLIYLTVTRPDIAYAVHIVSQFMAAPRTIH
        GSLNYFLGLEVS RSDGYLLSQAKYA DL+ARSGITDS T+ TPL+P+VHLT +DGVPL++ SLYRQLVGSLIYLTVTRPDIAYAVHIVSQFMAAPRTIH
Subjt:  GSLNYFLGLEVSPRSDGYLLSQAKYASDLIARSGITDSTTSPTPLDPHVHLTSFDGVPLDDASLYRQLVGSLIYLTVTRPDIAYAVHIVSQFMAAPRTIH

Query:  FTAVLRILRYVKGTLGHGLQFSSQSSLVLSGYSDADWAGDPTDRRSTTGYCFYLGDSLISWRSKKQSVISRSSTESEYRALADATAELIWLRWLLADMGV
        FTAVLRILRYVKGTLGHGLQFSSQSSLVLSGYSDADWAGDPTDRRSTTGYCFYLGDSLISWR+KKQSV+SRSSTESEY ALADATAEL+WLRWLLADMGV
Subjt:  FTAVLRILRYVKGTLGHGLQFSSQSSLVLSGYSDADWAGDPTDRRSTTGYCFYLGDSLISWRSKKQSVISRSSTESEYRALADATAELIWLRWLLADMGV

Query:  PQQGPTLLHCDNRSAIQIAHNDVFHERTKHIENDCHFVRHHLLSNTLLLRSVSTIEQPA
        PQQGPTLLHCDNRSAIQIAHNDVFHERTKHIENDCHF+RHHLLS+TLLL+ VST EQPA
Subjt:  PQQGPTLLHCDNRSAIQIAHNDVFHERTKHIENDCHFVRHHLLSNTLLLRSVSTIEQPA

A0A5A7UNP5 Putative mitochondrial protein3.43e-19379.11Show/hide
Query:  VYMKPPQGTSPPPNK--------------------------------------------TTHGIVLLLLYVDDMIITGNDQQAISDLQQYLGQHFEMKDL
        VYMKPP GTS PP+K                                            T  GIVLLLLYVDDMIITGND QAISDLQ YLGQHFEMKDL
Subjt:  VYMKPPQGTSPPPNK--------------------------------------------TTHGIVLLLLYVDDMIITGNDQQAISDLQQYLGQHFEMKDL

Query:  GSLNYFLGLEVSPRSDGYLLSQAKYASDLIARSGITDSTTSPTPLDPHVHLTSFDGVPLDDASLYRQLVGSLIYLTVTRPDIAYAVHIVSQFMAAPRTIH
        GSLNYFLG EVS RSDGYLLSQAKYASDL+ARSGIT+S T+ TPLDP+VHLT +DGVPL++ SLYRQLVGSLIYLTVTRPDIAY VHIVSQFMAAPRTIH
Subjt:  GSLNYFLGLEVSPRSDGYLLSQAKYASDLIARSGITDSTTSPTPLDPHVHLTSFDGVPLDDASLYRQLVGSLIYLTVTRPDIAYAVHIVSQFMAAPRTIH

Query:  FTAVLRILRYVKGTLGHGLQFSSQSSLVLSGYSDADWAGDPTDRRSTTGYCFYLGDSLISWRSKKQSVISRSSTESEYRALADATAELIWLRWLLADMGV
        FTAVLRILRY+KGTLGHGLQFSSQSSLVLSGYSDADW GDPTDRRSTTGYCFYLGDSLISWRSKKQSV+SRSSTESEYRALAD TAEL+WLRWLLADMGV
Subjt:  FTAVLRILRYVKGTLGHGLQFSSQSSLVLSGYSDADWAGDPTDRRSTTGYCFYLGDSLISWRSKKQSVISRSSTESEYRALADATAELIWLRWLLADMGV

Query:  PQQGPTLLHCDNRSAIQIAHNDVFHERTKHIENDCHFVRHHLLSNTLLLRSVSTIEQPA
        PQQGPTLL+CDNRSAIQIAHNDVFHERTKHIENDCHF+RHHLLSNTLLL+ VST EQPA
Subjt:  PQQGPTLLHCDNRSAIQIAHNDVFHERTKHIENDCHFVRHHLLSNTLLLRSVSTIEQPA

A0A5A7VBA1 Retrovirus-related Pol polyprotein from transposon TNT 1-941.71e-19379.67Show/hide
Query:  VYMKPPQGTSPPPNK--------------------------------------------TTHGIVLLLLYVDDMIITGNDQQAISDLQQYLGQHFEMKDL
        VYMKPP GTS PP+K                                            T  GIVLLLLYVDDMIITGND QAISDLQ YLGQHFEMKDL
Subjt:  VYMKPPQGTSPPPNK--------------------------------------------TTHGIVLLLLYVDDMIITGNDQQAISDLQQYLGQHFEMKDL

Query:  GSLNYFLGLEVSPRSDGYLLSQAKYASDLIARSGITDSTTSPTPLDPHVHLTSFDGVPLDDASLYRQLVGSLIYLTVTRPDIAYAVHIVSQFMAAPRTIH
        GSLNYFLGLEVS RSDGYLLSQ KYASDL+ARSGITDS T+ TPLD +VHLT +DGVPLD+ SLYRQLVGSLIYLTVTRPDIAYAVHIVSQFMAAPRTIH
Subjt:  GSLNYFLGLEVSPRSDGYLLSQAKYASDLIARSGITDSTTSPTPLDPHVHLTSFDGVPLDDASLYRQLVGSLIYLTVTRPDIAYAVHIVSQFMAAPRTIH

Query:  FTAVLRILRYVKGTLGHGLQFSSQSSLVLSGYSDADWAGDPTDRRSTTGYCFYLGDSLISWRSKKQSVISRSSTESEYRALADATAELIWLRWLLADMGV
        FTAVLRILRY+KGTLGHGLQFSSQSSLVLSGYSDADWAGDPTDRRSTTGYCFYLGDSLISWRSKKQSV+SRSSTESEYRALAD TAEL+WLRWLLADMG 
Subjt:  FTAVLRILRYVKGTLGHGLQFSSQSSLVLSGYSDADWAGDPTDRRSTTGYCFYLGDSLISWRSKKQSVISRSSTESEYRALADATAELIWLRWLLADMGV

Query:  PQQGPTLLHCDNRSAIQIAHNDVFHERTKHIENDCHFVRHHLLSNTLLLRSVSTIEQPA
        PQQGPTLLHCDNRSAIQIAHNDVFHERTKHIENDCHF+R HLLSNTLLL+ VST EQPA
Subjt:  PQQGPTLLHCDNRSAIQIAHNDVFHERTKHIENDCHFVRHHLLSNTLLLRSVSTIEQPA

A0A5D3E4B0 Putative mitochondrial protein7.80e-19979.11Show/hide
Query:  VYMKPPQGTSPPPNK--------------------------------------------TTHGIVLLLLYVDDMIITGNDQQAISDLQQYLGQHFEMKDL
        +YMKPP GTS PP+K                                            T  GIVLLLLYVDDMIITGND QAISDLQ YLGQHFEMKDL
Subjt:  VYMKPPQGTSPPPNK--------------------------------------------TTHGIVLLLLYVDDMIITGNDQQAISDLQQYLGQHFEMKDL

Query:  GSLNYFLGLEVSPRSDGYLLSQAKYASDLIARSGITDSTTSPTPLDPHVHLTSFDGVPLDDASLYRQLVGSLIYLTVTRPDIAYAVHIVSQFMAAPRTIH
        GSLNYFLGLEVS RSDGYLLSQAKYASDL+ARSGITDS T+ TPLDP+VHLT +DGVPL++ SLYRQLVGSLIYLTVTRPDI YAVHIVSQFMAAPRTIH
Subjt:  GSLNYFLGLEVSPRSDGYLLSQAKYASDLIARSGITDSTTSPTPLDPHVHLTSFDGVPLDDASLYRQLVGSLIYLTVTRPDIAYAVHIVSQFMAAPRTIH

Query:  FTAVLRILRYVKGTLGHGLQFSSQSSLVLSGYSDADWAGDPTDRRSTTGYCFYLGDSLISWRSKKQSVISRSSTESEYRALADATAELIWLRWLLADMGV
        FTAVLRILRY+KGTLGHGLQFSSQSSLVLSGYSDADWAGDPTDRRSTTGYCFYLGDSLISWRSKKQSV+SRSSTESEYRALAD TAEL+WL WLLADMGV
Subjt:  FTAVLRILRYVKGTLGHGLQFSSQSSLVLSGYSDADWAGDPTDRRSTTGYCFYLGDSLISWRSKKQSVISRSSTESEYRALADATAELIWLRWLLADMGV

Query:  PQQGPTLLHCDNRSAIQIAHNDVFHERTKHIENDCHFVRHHLLSNTLLLRSVSTIEQPA
        PQQGPTLL+CDNRSAIQIAHNDVFHERTKHIENDCHF+RHHLLSNTLLL+ VST +QPA
Subjt:  PQQGPTLLHCDNRSAIQIAHNDVFHERTKHIENDCHFVRHHLLSNTLLLRSVSTIEQPA

SwissProt top hitse value%identityAlignment
P04146 Copia protein5.8e-4734.11Show/hide
Query:  VLLLLYVDDMIITGNDQQAISDLQQYLGQHFEMKDLGSLNYFLGLEVSPRSDGYLLSQAKYASDLIARSGITDSTTSPTPLDPHVHLTSFDGVPLDDASL
        + +LLYVDD++I   D   +++ ++YL + F M DL  + +F+G+ +  + D   LSQ+ Y   ++++  + +     TPL   ++    +    D  + 
Subjt:  VLLLLYVDDMIITGNDQQAISDLQQYLGQHFEMKDLGSLNYFLGLEVSPRSDGYLLSQAKYASDLIARSGITDSTTSPTPLDPHVHLTSFDGVPLDDASL

Query:  YRQLVGSLIYLTV-TRPDIAYAVHIVSQFMAAPRTIHFTAVLRILRYVKGTLGHGLQFSSQSSL--VLSGYSDADWAGDPTDRRSTTGYCFYLGD-SLIS
         R L+G L+Y+ + TRPD+  AV+I+S++ +   +  +  + R+LRY+KGT+   L F    +    + GY D+DWAG   DR+STTGY F + D +LI 
Subjt:  YRQLVGSLIYLTV-TRPDIAYAVHIVSQFMAAPRTIHFTAVLRILRYVKGTLGHGLQFSSQSSL--VLSGYSDADWAGDPTDRRSTTGYCFYLGD-SLIS

Query:  WRSKKQSVISRSSTESEYRALADATAELIWLRWLLADMGVPQQGPTLLHCDNRSAIQIAHNDVFHERTKHIENDCHFVRHHLLSNTLLLRSVSTIEQPA
        W +K+Q+ ++ SSTE+EY AL +A  E +WL++LL  + +  + P  ++ DN+  I IA+N   H+R KHI+   HF R  + +N + L  + T  Q A
Subjt:  WRSKKQSVISRSSTESEYRALADATAELIWLRWLLADMGVPQQGPTLLHCDNRSAIQIAHNDVFHERTKHIENDCHFVRHHLLSNTLLLRSVSTIEQPA

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-941.5e-5039.41Show/hide
Query:  HGIVLLLLYVDDMIITGNDQQAISDLQQYLGQHFEMKDLGSLNYFLGLEV--SPRSDGYLLSQAKYASDLIARSGITDSTTSPTPLDPHVHL------TS
        +  ++LLLYVDDM+I G D+  I+ L+  L + F+MKDLG     LG+++     S    LSQ KY   ++ R  + ++    TPL  H+ L      T+
Subjt:  HGIVLLLLYVDDMIITGNDQQAISDLQQYLGQHFEMKDLGSLNYFLGLEV--SPRSDGYLLSQAKYASDLIARSGITDSTTSPTPLDPHVHL------TS

Query:  FDGVPLDDASLYRQLVGSLIYLTV-TRPDIAYAVHIVSQFMAAPRTIHFTAVLRILRYVKGTLGHGLQFSSQSSLVLSGYSDADWAGDPTDRRSTTGYCF
         +         Y   VGSL+Y  V TRPDIA+AV +VS+F+  P   H+ AV  ILRY++GT G  L F   S  +L GY+DAD AGD  +R+S+TGY F
Subjt:  FDGVPLDDASLYRQLVGSLIYLTV-TRPDIAYAVHIVSQFMAAPRTIHFTAVLRILRYVKGTLGHGLQFSSQSSLVLSGYSDADWAGDPTDRRSTTGYCF

Query:  YLGDSLISWRSKKQSVISRSSTESEYRALADATAELIWLRWLLADMGVPQQGPTLLHCDNRSAIQIAHNDVFHERTKHIENDCHFVRHHLLSNTLLLRSV
              ISW+SK Q  ++ S+TE+EY A  +   E+IWL+  L ++G+ Q+   +++CD++SAI ++ N ++H RTKHI+   H++R  +   +L +  +
Subjt:  YLGDSLISWRSKKQSVISRSSTESEYRALADATAELIWLRWLLADMGVPQQGPTLLHCDNRSAIQIAHNDVFHERTKHIENDCHFVRHHLLSNTLLLRSV

Query:  STIEQPA
        ST E PA
Subjt:  STIEQPA

P92519 Uncharacterized mitochondrial protein AtMg008101.1e-5046.88Show/hide
Query:  LLLYVDDMIITGNDQQAISDLQQYLGQHFEMKDLGSLNYFLGLEVSPRSDGYLLSQAKYASDLIARSGITDSTTSPTPLDPHVHLTSFDGVPLDDASLYR
        LLLYVDD+++TG+    ++ L   L   F MKDLG ++YFLG+++     G  LSQ KYA  ++  +G+ D     TPL   ++ +S       D S +R
Subjt:  LLLYVDDMIITGNDQQAISDLQQYLGQHFEMKDLGSLNYFLGLEVSPRSDGYLLSQAKYASDLIARSGITDSTTSPTPLDPHVHLTSFDGVPLDDASLYR

Query:  QLVGSLIYLTVTRPDIAYAVHIVSQFMAAPRTIHFTAVLRILRYVKGTLGHGLQFSSQSSLVLSGYSDADWAGDPTDRRSTTGYCFYLGDSLISWRSKKQ
         +VG+L YLT+TRPDI+YAV+IV Q M  P    F  + R+LRYVKGT+ HGL     S L +  + D+DWAG  + RRSTTG+C +LG ++ISW +K+Q
Subjt:  QLVGSLIYLTVTRPDIAYAVHIVSQFMAAPRTIHFTAVLRILRYVKGTLGHGLQFSSQSSLVLSGYSDADWAGDPTDRRSTTGYCFYLGDSLISWRSKKQ

Query:  SVISRSSTESEYRALADATAELIW
          +SRSSTE+EYRALA   AEL W
Subjt:  SVISRSSTESEYRALADATAELIW

Q94HW2 Retrovirus-related Pol polyprotein from transposon RE12.5e-6645.61Show/hide
Query:  IVLLLLYVDDMIITGNDQQAISDLQQYLGQHFEMKDLGSLNYFLGLEVSPRSDGYLLSQAKYASDLIARSGITDSTTSPTPLDPHVHLTSFDGVPLDDAS
        IV +L+YVDD++ITGND   + +    L Q F +KD   L+YFLG+E      G  LSQ +Y  DL+AR+ +  +    TP+ P   L+ + G  L D +
Subjt:  IVLLLLYVDDMIITGNDQQAISDLQQYLGQHFEMKDLGSLNYFLGLEVSPRSDGYLLSQAKYASDLIARSGITDSTTSPTPLDPHVHLTSFDGVPLDDAS

Query:  LYRQLVGSLIYLTVTRPDIAYAVHIVSQFMAAPRTIHFTAVLRILRYVKGTLGHGLQFSSQSSLVLSGYSDADWAGDPTDRRSTTGYCFYLGDSLISWRS
         YR +VGSL YL  TRPDI+YAV+ +SQFM  P   H  A+ RILRY+ GT  HG+     ++L L  YSDADWAGD  D  ST GY  YLG   ISW S
Subjt:  LYRQLVGSLIYLTVTRPDIAYAVHIVSQFMAAPRTIHFTAVLRILRYVKGTLGHGLQFSSQSSLVLSGYSDADWAGDPTDRRSTTGYCFYLGDSLISWRS

Query:  KKQSVISRSSTESEYRALADATAELIWLRWLLADMGVPQQGPTLLHCDNRSAIQIAHNDVFHERTKHIENDCHFVRHHLLSNTLLLRSVSTIEQPA
        KKQ  + RSSTE+EYR++A+ ++E+ W+  LL ++G+    P +++CDN  A  +  N VFH R KHI  D HF+R+ + S  L +  VST +Q A
Subjt:  KKQSVISRSSTESEYRALADATAELIWLRWLLADMGVPQQGPTLLHCDNRSAIQIAHNDVFHERTKHIENDCHFVRHHLLSNTLLLRSVSTIEQPA

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE21.0e-6444.26Show/hide
Query:  IVLLLLYVDDMIITGNDQQAISDLQQYLGQHFEMKDLGSLNYFLGLEVSPRSDGYLLSQAKYASDLIARSGITDSTTSPTPLDPHVHLTSFDGVPLDDAS
        I+ +L+YVDD++ITGND   +      L Q F +K+   L+YFLG+E      G  LSQ +Y  DL+AR+ +  +    TP+     LT   G  L D +
Subjt:  IVLLLLYVDDMIITGNDQQAISDLQQYLGQHFEMKDLGSLNYFLGLEVSPRSDGYLLSQAKYASDLIARSGITDSTTSPTPLDPHVHLTSFDGVPLDDAS

Query:  LYRQLVGSLIYLTVTRPDIAYAVHIVSQFMAAPRTIHFTAVLRILRYVKGTLGHGLQFSSQSSLVLSGYSDADWAGDPTDRRSTTGYCFYLGDSLISWRS
         YR +VGSL YL  TRPD++YAV+ +SQ+M  P   H+ A+ R+LRY+ GT  HG+     ++L L  YSDADWAGD  D  ST GY  YLG   ISW S
Subjt:  LYRQLVGSLIYLTVTRPDIAYAVHIVSQFMAAPRTIHFTAVLRILRYVKGTLGHGLQFSSQSSLVLSGYSDADWAGDPTDRRSTTGYCFYLGDSLISWRS

Query:  KKQSVISRSSTESEYRALADATAELIWLRWLLADMGVPQQGPTLLHCDNRSAIQIAHNDVFHERTKHIENDCHFVRHHLLSNTLLLRSVSTIEQPA
        KKQ  + RSSTE+EYR++A+ ++EL W+  LL ++G+    P +++CDN  A  +  N VFH R KHI  D HF+R+ + S  L +  VST +Q A
Subjt:  KKQSVISRSSTESEYRALADATAELIWLRWLLADMGVPQQGPTLLHCDNRSAIQIAHNDVFHERTKHIENDCHFVRHHLLSNTLLLRSVSTIEQPA

Arabidopsis top hitse value%identityAlignment
AT4G23160.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 89.7e-7447.77Show/hide
Query:  LLLYVDDMIITGNDQQAISDLQQYLGQHFEMKDLGSLNYFLGLEVSPRSDGYLLSQAKYASDLIARSGITDSTTSPTPLDPHVHLTSFDGVPLDDASLYR
        +L+YVDD+II  N+  A+ +L+  L   F+++DLG L YFLGLE++  + G  + Q KYA DL+  +G+     S  P+DP V  ++  G    DA  YR
Subjt:  LLLYVDDMIITGNDQQAISDLQQYLGQHFEMKDLGSLNYFLGLEVSPRSDGYLLSQAKYASDLIARSGITDSTTSPTPLDPHVHLTSFDGVPLDDASLYR

Query:  QLVGSLIYLTVTRPDIAYAVHIVSQFMAAPRTIHFTAVLRILRYVKGTLGHGLQFSSQSSLVLSGYSDADWAGDPTDRRSTTGYCFYLGDSLISWRSKKQ
        +L+G L+YL +TR DI++AV+ +SQF  APR  H  AV++IL Y+KGT+G GL +SSQ+ + L  +SDA +      RRST GYC +LG SLISW+SKKQ
Subjt:  QLVGSLIYLTVTRPDIAYAVHIVSQFMAAPRTIHFTAVLRILRYVKGTLGHGLQFSSQSSLVLSGYSDADWAGDPTDRRSTTGYCFYLGDSLISWRSKKQ

Query:  SVISRSSTESEYRALADATAELIWLRWLLADMGVPQQGPTLLHCDNRSAIQIAHNDVFHERTKHIENDCHFVRHHLLSNTLLLRSVSTIEQ
         V+S+SS E+EYRAL+ AT E++WL     ++ +P   PTLL CDN +AI IA N VFHERTKHIE+DCH VR   +    L  S    ++
Subjt:  SVISRSSTESEYRALADATAELIWLRWLLADMGVPQQGPTLLHCDNRSAIQIAHNDVFHERTKHIENDCHFVRHHLLSNTLLLRSVSTIEQ

ATMG00240.1 Gag-Pol-related retrotransposon family protein3.4e-1851.9Show/hide
Query:  IYLTVTRPDIAYAVHIVSQFMAAPRTIHFTAVLRILRYVKGTLGHGLQFSSQSSLVLSGYSDADWAGDPTDRRSTTGYC
        +YLT+TRPD+ +AV+ +SQF +A RT    AV ++L YVKGT+G GL +S+ S L L  ++D+DWA  P  RRS TG+C
Subjt:  IYLTVTRPDIAYAVHIVSQFMAAPRTIHFTAVLRILRYVKGTLGHGLQFSSQSSLVLSGYSDADWAGDPTDRRSTTGYC

ATMG00810.1 DNA/RNA polymerases superfamily protein8.0e-5246.88Show/hide
Query:  LLLYVDDMIITGNDQQAISDLQQYLGQHFEMKDLGSLNYFLGLEVSPRSDGYLLSQAKYASDLIARSGITDSTTSPTPLDPHVHLTSFDGVPLDDASLYR
        LLLYVDD+++TG+    ++ L   L   F MKDLG ++YFLG+++     G  LSQ KYA  ++  +G+ D     TPL   ++ +S       D S +R
Subjt:  LLLYVDDMIITGNDQQAISDLQQYLGQHFEMKDLGSLNYFLGLEVSPRSDGYLLSQAKYASDLIARSGITDSTTSPTPLDPHVHLTSFDGVPLDDASLYR

Query:  QLVGSLIYLTVTRPDIAYAVHIVSQFMAAPRTIHFTAVLRILRYVKGTLGHGLQFSSQSSLVLSGYSDADWAGDPTDRRSTTGYCFYLGDSLISWRSKKQ
         +VG+L YLT+TRPDI+YAV+IV Q M  P    F  + R+LRYVKGT+ HGL     S L +  + D+DWAG  + RRSTTG+C +LG ++ISW +K+Q
Subjt:  QLVGSLIYLTVTRPDIAYAVHIVSQFMAAPRTIHFTAVLRILRYVKGTLGHGLQFSSQSSLVLSGYSDADWAGDPTDRRSTTGYCFYLGDSLISWRSKKQ

Query:  SVISRSSTESEYRALADATAELIW
          +SRSSTE+EYRALA   AEL W
Subjt:  SVISRSSTESEYRALADATAELIW


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GTGTATATGAAGCCACCTCAGGGAACTTCTCCTCCTCCCAACAAGACAACTCATGGTATTGTTCTTCTCCTTCTTTATGTTGATGATATGATTATTACTGGTAATGATCA
ACAGGCCATATCCGACCTACAACAATATCTTGGTCAACATTTTGAGATGAAAGACCTTGGATCTCTCAATTACTTTCTCGGTCTTGAAGTCTCTCCCCGTTCAGATGGTT
ATCTGTTATCTCAAGCGAAATATGCATCTGATCTAATAGCACGCTCAGGAATTACAGACTCCACCACATCTCCAACACCGTTAGATCCTCATGTCCATCTAACTTCGTTT
GATGGTGTTCCTCTTGACGATGCAAGCTTGTATCGGCAACTTGTTGGCAGTCTTATATACCTAACAGTAACTCGCCCAGATATTGCATATGCTGTTCATATTGTCAGTCA
ATTTATGGCTGCTCCTCGAACAATTCATTTCACTGCTGTTCTACGCATACTTCGCTATGTCAAAGGCACCTTGGGACATGGTCTTCAATTCTCATCTCAGTCTTCCCTTG
TGTTGTCGGGATATTCTGATGCTGATTGGGCGGGGGATCCTACTGATCGACGATCCACTACAGGATACTGTTTTTACTTAGGTGATTCTCTCATCTCATGGCGTAGTAAG
AAACAAAGTGTTATATCTCGTTCCAGTACGGAATCTGAATATCGTGCTCTGGCTGATGCTACAGCTGAACTTATATGGCTTCGGTGGCTCCTTGCCGATATGGGTGTCCC
TCAACAGGGTCCTACCCTCCTCCATTGTGACAATCGTAGTGCCATTCAGATTGCTCACAATGATGTGTTTCATGAACGTACAAAACACATTGAAAATGACTGTCACTTTG
TTCGTCACCACCTCTTAAGCAACACCCTCCTCTTACGTTCTGTTTCTACTATTGAACAACCTGCG
mRNA sequenceShow/hide mRNA sequence
GTGTATATGAAGCCACCTCAGGGAACTTCTCCTCCTCCCAACAAGACAACTCATGGTATTGTTCTTCTCCTTCTTTATGTTGATGATATGATTATTACTGGTAATGATCA
ACAGGCCATATCCGACCTACAACAATATCTTGGTCAACATTTTGAGATGAAAGACCTTGGATCTCTCAATTACTTTCTCGGTCTTGAAGTCTCTCCCCGTTCAGATGGTT
ATCTGTTATCTCAAGCGAAATATGCATCTGATCTAATAGCACGCTCAGGAATTACAGACTCCACCACATCTCCAACACCGTTAGATCCTCATGTCCATCTAACTTCGTTT
GATGGTGTTCCTCTTGACGATGCAAGCTTGTATCGGCAACTTGTTGGCAGTCTTATATACCTAACAGTAACTCGCCCAGATATTGCATATGCTGTTCATATTGTCAGTCA
ATTTATGGCTGCTCCTCGAACAATTCATTTCACTGCTGTTCTACGCATACTTCGCTATGTCAAAGGCACCTTGGGACATGGTCTTCAATTCTCATCTCAGTCTTCCCTTG
TGTTGTCGGGATATTCTGATGCTGATTGGGCGGGGGATCCTACTGATCGACGATCCACTACAGGATACTGTTTTTACTTAGGTGATTCTCTCATCTCATGGCGTAGTAAG
AAACAAAGTGTTATATCTCGTTCCAGTACGGAATCTGAATATCGTGCTCTGGCTGATGCTACAGCTGAACTTATATGGCTTCGGTGGCTCCTTGCCGATATGGGTGTCCC
TCAACAGGGTCCTACCCTCCTCCATTGTGACAATCGTAGTGCCATTCAGATTGCTCACAATGATGTGTTTCATGAACGTACAAAACACATTGAAAATGACTGTCACTTTG
TTCGTCACCACCTCTTAAGCAACACCCTCCTCTTACGTTCTGTTTCTACTATTGAACAACCTGCG
Protein sequenceShow/hide protein sequence
VYMKPPQGTSPPPNKTTHGIVLLLLYVDDMIITGNDQQAISDLQQYLGQHFEMKDLGSLNYFLGLEVSPRSDGYLLSQAKYASDLIARSGITDSTTSPTPLDPHVHLTSF
DGVPLDDASLYRQLVGSLIYLTVTRPDIAYAVHIVSQFMAAPRTIHFTAVLRILRYVKGTLGHGLQFSSQSSLVLSGYSDADWAGDPTDRRSTTGYCFYLGDSLISWRSK
KQSVISRSSTESEYRALADATAELIWLRWLLADMGVPQQGPTLLHCDNRSAIQIAHNDVFHERTKHIENDCHFVRHHLLSNTLLLRSVSTIEQPA