; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cucsat.G12708 (gene) of Cucumber (B10) v3 genome

Gene IDCucsat.G12708
OrganismCucumis sativus L. var. sativus cv. B10 (Cucumber (B10) v3)
DescriptionGag-pol polyprotein
Genome locationctg1838:2817059..2819826
RNA-Seq ExpressionCucsat.G12708
SyntenyCucsat.G12708
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0038891.1 gag-pol polyprotein [Cucumis melo var. makuwa]1.91e-5263.77Show/hide
Query:  MTSYLKSLDAKAWKAVKIGWKPPTVTVDGKPVPKPEEAWTDAEEQESLRNSRALNAIHNGVDLNMFKLINSRVTAKDAWKSLEVAFEGTSKVKTSRLLLL
        M  ++K+LD KAW+A+  G++PP VTV+G  V KPE  WTDAEEQ S+ N+RA+NAI NGVDLN+FKLINS  TAK AWK LEVA+EGTSKVK SRL L+
Subjt:  MTSYLKSLDAKAWKAVKIGWKPPTVTVDGKPVPKPEEAWTDAEEQESLRNSRALNAIHNGVDLNMFKLINSRVTAKDAWKSLEVAFEGTSKVKTSRLLLL

Query:  TTKFESLRIMEEETITEYNVRVLEIANDSLILVKEFQK
        T+KFE+L++ E+ET++ YN RVLEIANDSL+L ++  K
Subjt:  TTKFESLRIMEEETITEYNVRVLEIANDSLILVKEFQK

KAA0053604.1 gag-pol polyprotein [Cucumis melo var. makuwa]3.96e-5162.88Show/hide
Query:  MTSYLKSLDAKAWKAVKIGWKPPTVTVDGKPVPKPEEAWTDAEEQESLRNSRALNAIHNGVDLNMFKLINSRVTAKDAWKSLEVAFEGTSKVKTSRLLLL
        M  ++K+LD KAW+A+  G+ PP +TV+G  VPKPE  WT+AEEQ S+ N+RALNAI NGVDLN+FKLIN  +TAK+AWK+LEVA+EGTSKVK SRL L+
Subjt:  MTSYLKSLDAKAWKAVKIGWKPPTVTVDGKPVPKPEEAWTDAEEQESLRNSRALNAIHNGVDLNMFKLINSRVTAKDAWKSLEVAFEGTSKVKTSRLLLL

Query:  TTKFESLRIMEEETITEYNVRVLEIANDSLIL
        T KFE++R+ E+E +++YN RVLE AN+SL+L
Subjt:  TTKFESLRIMEEETITEYNVRVLEIANDSLIL

KAA0060333.1 gag-pol polyprotein [Cucumis melo var. makuwa]6.53e-5162.12Show/hide
Query:  MTSYLKSLDAKAWKAVKIGWKPPTVTVDGKPVPKPEEAWTDAEEQESLRNSRALNAIHNGVDLNMFKLINSRVTAKDAWKSLEVAFEGTSKVKTSRLLLL
        M  ++K+LD KAW+A+  G+ PP +TV+G  VPKPE  WTDAEEQ S+ N++ALN+I NGVDLN+FKLINS  T K+AWK+LEVA+EGTSKVK S L L+
Subjt:  MTSYLKSLDAKAWKAVKIGWKPPTVTVDGKPVPKPEEAWTDAEEQESLRNSRALNAIHNGVDLNMFKLINSRVTAKDAWKSLEVAFEGTSKVKTSRLLLL

Query:  TTKFESLRIMEEETITEYNVRVLEIANDSLIL
        T+KFE+LR+ ++E++++YN RVLEIAN+SL+L
Subjt:  TTKFESLRIMEEETITEYNVRVLEIANDSLIL

TYJ96033.1 gag-pol polyprotein [Cucumis melo var. makuwa]3.85e-5263.77Show/hide
Query:  MTSYLKSLDAKAWKAVKIGWKPPTVTVDGKPVPKPEEAWTDAEEQESLRNSRALNAIHNGVDLNMFKLINSRVTAKDAWKSLEVAFEGTSKVKTSRLLLL
        M  ++K+LD KAW+A+  G++PP VTV+G  V KPE  WTDAEEQ S+ N+RA+NAI NGVDLN+FKLINS  TAK AWK LEVA+EGTSKVK SRL L+
Subjt:  MTSYLKSLDAKAWKAVKIGWKPPTVTVDGKPVPKPEEAWTDAEEQESLRNSRALNAIHNGVDLNMFKLINSRVTAKDAWKSLEVAFEGTSKVKTSRLLLL

Query:  TTKFESLRIMEEETITEYNVRVLEIANDSLILVKEFQK
        T+KFE+L++ E+ET++ YN RVLEIANDSL+L ++  K
Subjt:  TTKFESLRIMEEETITEYNVRVLEIANDSLILVKEFQK

TYK19191.1 gag-pol polyprotein [Cucumis melo var. makuwa]5.61e-5162.88Show/hide
Query:  MTSYLKSLDAKAWKAVKIGWKPPTVTVDGKPVPKPEEAWTDAEEQESLRNSRALNAIHNGVDLNMFKLINSRVTAKDAWKSLEVAFEGTSKVKTSRLLLL
        M  ++K+LD KAW+A+  G+ PP +TV+G  VPKPE  WT+AEEQ S+ N+RALNAI NGVDLN+FKLIN  +TAK+AWK+LEVA+EGTSKVK SRL L+
Subjt:  MTSYLKSLDAKAWKAVKIGWKPPTVTVDGKPVPKPEEAWTDAEEQESLRNSRALNAIHNGVDLNMFKLINSRVTAKDAWKSLEVAFEGTSKVKTSRLLLL

Query:  TTKFESLRIMEEETITEYNVRVLEIANDSLIL
        T KFE++R+ E+E +++YN RVLE AN+SL+L
Subjt:  TTKFESLRIMEEETITEYNVRVLEIANDSLIL

TrEMBL top hitse value%identityAlignment
A0A5A7TB93 Gag-pol polyprotein9.26e-5363.77Show/hide
Query:  MTSYLKSLDAKAWKAVKIGWKPPTVTVDGKPVPKPEEAWTDAEEQESLRNSRALNAIHNGVDLNMFKLINSRVTAKDAWKSLEVAFEGTSKVKTSRLLLL
        M  ++K+LD KAW+A+  G++PP VTV+G  V KPE  WTDAEEQ S+ N+RA+NAI NGVDLN+FKLINS  TAK AWK LEVA+EGTSKVK SRL L+
Subjt:  MTSYLKSLDAKAWKAVKIGWKPPTVTVDGKPVPKPEEAWTDAEEQESLRNSRALNAIHNGVDLNMFKLINSRVTAKDAWKSLEVAFEGTSKVKTSRLLLL

Query:  TTKFESLRIMEEETITEYNVRVLEIANDSLILVKEFQK
        T+KFE+L++ E+ET++ YN RVLEIANDSL+L ++  K
Subjt:  TTKFESLRIMEEETITEYNVRVLEIANDSLILVKEFQK

A0A5A7UEG1 Gag-pol polyprotein1.92e-5162.88Show/hide
Query:  MTSYLKSLDAKAWKAVKIGWKPPTVTVDGKPVPKPEEAWTDAEEQESLRNSRALNAIHNGVDLNMFKLINSRVTAKDAWKSLEVAFEGTSKVKTSRLLLL
        M  ++K+LD KAW+A+  G+ PP +TV+G  VPKPE  WT+AEEQ S+ N+RALNAI NGVDLN+FKLIN  +TAK+AWK+LEVA+EGTSKVK SRL L+
Subjt:  MTSYLKSLDAKAWKAVKIGWKPPTVTVDGKPVPKPEEAWTDAEEQESLRNSRALNAIHNGVDLNMFKLINSRVTAKDAWKSLEVAFEGTSKVKTSRLLLL

Query:  TTKFESLRIMEEETITEYNVRVLEIANDSLIL
        T KFE++R+ E+E +++YN RVLE AN+SL+L
Subjt:  TTKFESLRIMEEETITEYNVRVLEIANDSLIL

A0A5D3B9Q8 Gag-pol polyprotein1.86e-5263.77Show/hide
Query:  MTSYLKSLDAKAWKAVKIGWKPPTVTVDGKPVPKPEEAWTDAEEQESLRNSRALNAIHNGVDLNMFKLINSRVTAKDAWKSLEVAFEGTSKVKTSRLLLL
        M  ++K+LD KAW+A+  G++PP VTV+G  V KPE  WTDAEEQ S+ N+RA+NAI NGVDLN+FKLINS  TAK AWK LEVA+EGTSKVK SRL L+
Subjt:  MTSYLKSLDAKAWKAVKIGWKPPTVTVDGKPVPKPEEAWTDAEEQESLRNSRALNAIHNGVDLNMFKLINSRVTAKDAWKSLEVAFEGTSKVKTSRLLLL

Query:  TTKFESLRIMEEETITEYNVRVLEIANDSLILVKEFQK
        T+KFE+L++ E+ET++ YN RVLEIANDSL+L ++  K
Subjt:  TTKFESLRIMEEETITEYNVRVLEIANDSLILVKEFQK

A0A5D3D6K4 Gag-pol polyprotein2.72e-5162.88Show/hide
Query:  MTSYLKSLDAKAWKAVKIGWKPPTVTVDGKPVPKPEEAWTDAEEQESLRNSRALNAIHNGVDLNMFKLINSRVTAKDAWKSLEVAFEGTSKVKTSRLLLL
        M  ++K+LD KAW+A+  G+ PP +TV+G  VPKPE  WT+AEEQ S+ N+RALNAI NGVDLN+FKLIN  +TAK+AWK+LEVA+EGTSKVK SRL L+
Subjt:  MTSYLKSLDAKAWKAVKIGWKPPTVTVDGKPVPKPEEAWTDAEEQESLRNSRALNAIHNGVDLNMFKLINSRVTAKDAWKSLEVAFEGTSKVKTSRLLLL

Query:  TTKFESLRIMEEETITEYNVRVLEIANDSLIL
        T KFE++R+ E+E +++YN RVLE AN+SL+L
Subjt:  TTKFESLRIMEEETITEYNVRVLEIANDSLIL

A0A5D3DER3 Gag-pol polyprotein3.16e-5162.12Show/hide
Query:  MTSYLKSLDAKAWKAVKIGWKPPTVTVDGKPVPKPEEAWTDAEEQESLRNSRALNAIHNGVDLNMFKLINSRVTAKDAWKSLEVAFEGTSKVKTSRLLLL
        M  ++K+LD KAW+A+  G+ PP +TV+G  VPKPE  WTDAEEQ S+ N++ALN+I NGVDLN+FKLINS  T K+AWK+LEVA+EGTSKVK S L L+
Subjt:  MTSYLKSLDAKAWKAVKIGWKPPTVTVDGKPVPKPEEAWTDAEEQESLRNSRALNAIHNGVDLNMFKLINSRVTAKDAWKSLEVAFEGTSKVKTSRLLLL

Query:  TTKFESLRIMEEETITEYNVRVLEIANDSLIL
        T+KFE+LR+ ++E++++YN RVLEIAN+SL+L
Subjt:  TTKFESLRIMEEETITEYNVRVLEIANDSLIL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACGTCATACCTAAAGTCTCTGGATGCAAAGGCCTGGAAAGCAGTTAAAATTGGATGGAAACCACCTACGGTTACTGTTGATGGTAAGCCTGTGCCAAAACCAGAGGA
AGCCTGGACTGATGCAGAGGAGCAGGAATCCTTGAGAAATTCTCGAGCTCTCAATGCCATACATAATGGAGTCGACCTGAACATGTTCAAATTAATCAACTCCCGTGTTA
CAGCAAAAGACGCATGGAAAAGCCTTGAAGTAGCATTTGAGGGAACATCTAAAGTAAAGACCTCTCGTCTACTGCTGTTGACTACTAAGTTTGAATCACTAAGAATAATG
GAAGAAGAAACCATAACTGAGTACAATGTACGGGTTCTGGAAATTGCCAATGATTCTTTGATCTTGGTGAAGGAATTCCAGAAGCAAAGCTAG
mRNA sequenceShow/hide mRNA sequence
ATGACGTCATACCTAAAGTCTCTGGATGCAAAGGCCTGGAAAGCAGTTAAAATTGGATGGAAACCACCTACGGTTACTGTTGATGGTAAGCCTGTGCCAAAACCAGAGGA
AGCCTGGACTGATGCAGAGGAGCAGGAATCCTTGAGAAATTCTCGAGCTCTCAATGCCATACATAATGGAGTCGACCTGAACATGTTCAAATTAATCAACTCCCGTGTTA
CAGCAAAAGACGCATGGAAAAGCCTTGAAGTAGCATTTGAGGGAACATCTAAAGTAAAGACCTCTCGTCTACTGCTGTTGACTACTAAGTTTGAATCACTAAGAATAATG
GAAGAAGAAACCATAACTGAGTACAATGTACGGGTTCTGGAAATTGCCAATGATTCTTTGATCTTGGTGAAGGAATTCCAGAAGCAAAGCTAG
Protein sequenceShow/hide protein sequence
MTSYLKSLDAKAWKAVKIGWKPPTVTVDGKPVPKPEEAWTDAEEQESLRNSRALNAIHNGVDLNMFKLINSRVTAKDAWKSLEVAFEGTSKVKTSRLLLLTTKFESLRIM
EEETITEYNVRVLEIANDSLILVKEFQKQS