CuGenDBv2

Gene ID	Cucsat.G12897
Organism	Cucumis sativus L. var. sativus cv. B10 (Cucumber (B10) v3)
Description	protein SPA, chloroplastic
Genome location	ctg1838:6763633..6766900
RNA-Seq Expression	Cucsat.G12897
Synteny	Cucsat.G12897
Gene Ontology terms	GO:0010206 - photosystem II repair (biological process) GO:0009507 - chloroplast (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0003756 - protein disulfide isomerase activity (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

XP_004136388.1 protein disulfide-isomerase LQY1, chloroplastic [Cucumis sativus]

1.88e-112

100

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Query:  MTVAPSLSRLHSPFLYCPLKPTPSTSLSVTFSGNQRSPPSYPRIRAIDLDQNTVVALSVGLVSVAIGIGIPVFYETQIDNAAKRENTQPCFPCSGSGAQR
        MTVAPSLSRLHSPFLYCPLKPTPSTSLSVTFSGNQRSPPSYPRIRAIDLDQNTVVALSVGLVSVAIGIGIPVFYETQIDNAAKRENTQPCFPCSGSGAQR
Subjt:  MTVAPSLSRLHSPFLYCPLKPTPSTSLSVTFSGNQRSPPSYPRIRAIDLDQNTVVALSVGLVSVAIGIGIPVFYETQIDNAAKRENTQPCFPCSGSGAQR

Query:  CRFCMGTGNVTVELGGDDKEVSRCINCDGVGTLTCTTCQGSGIQPRYLDRREFKDDD
        CRFCMGTGNVTVELGGDDKEVSRCINCDGVGTLTCTTCQGSGIQPRYLDRREFKDDD
Subjt:  CRFCMGTGNVTVELGGDDKEVSRCINCDGVGTLTCTTCQGSGIQPRYLDRREFKDDD

XP_008466492.1 PREDICTED: protein SPA, chloroplastic [Cucumis melo]

1.81e-110

98.09

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Query:  MTVAPSLSRLHSPFLYCPLKPTPSTSLSVTFSGNQRSPPSYPRIRAIDLDQNTVVALSVGLVSVAIGIGIPVFYETQIDNAAKRENTQPCFPCSGSGAQR
        MTVAPSLSRLHSPFLYCPLKPT STSLSVTFSGNQRSPPSYPRIRAIDLDQNTVVALSVGLVSVA+GIGIPVFYETQIDNAAKRENTQPCFPCSGSGAQR
Subjt:  MTVAPSLSRLHSPFLYCPLKPTPSTSLSVTFSGNQRSPPSYPRIRAIDLDQNTVVALSVGLVSVAIGIGIPVFYETQIDNAAKRENTQPCFPCSGSGAQR

Query:  CRFCMGTGNVTVELGGDDKEVSRCINCDGVGTLTCTTCQGSGIQPRYLDRREFKDDD
        CRFCMGTGNVTVELGGD+KEVSRCINCDGVGTLTCTTCQGSGIQPRYLDRREFKDDD
Subjt:  CRFCMGTGNVTVELGGDDKEVSRCINCDGVGTLTCTTCQGSGIQPRYLDRREFKDDD

XP_022142253.1 protein SPA, chloroplastic [Momordica charantia]

3.78e-103

92.36

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Query:  MTVAPSLSRLHSPFLYCPLKPTPSTSLSVTFSGNQRSPPSYPRIRAIDLDQNTVVALSVGLVSVAIGIGIPVFYETQIDNAAKRENTQPCFPCSGSGAQR
        MT APSLSRLHSPFLY PLKPT + SLS+TFS NQRSP SYPRIRAIDLDQNTVVALSVGLVSVA+GIGIPVFYETQIDNAAKRENTQPCFPCSGSGAQ+
Subjt:  MTVAPSLSRLHSPFLYCPLKPTPSTSLSVTFSGNQRSPPSYPRIRAIDLDQNTVVALSVGLVSVAIGIGIPVFYETQIDNAAKRENTQPCFPCSGSGAQR

Query:  CRFCMGTGNVTVELGGDDKEVSRCINCDGVGTLTCTTCQGSGIQPRYLDRREFKDDD
        CRFCMGTGNVTVELGGD+KEVSRCINC+GVGTLTCTTCQGSGIQPRYLDRREFKDDD
Subjt:  CRFCMGTGNVTVELGGDDKEVSRCINCDGVGTLTCTTCQGSGIQPRYLDRREFKDDD

XP_022936404.1 protein SPA, chloroplastic [Cucurbita moschata]

2.77e-105

93.63

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Query:  MTVAPSLSRLHSPFLYCPLKPTPSTSLSVTFSGNQRSPPSYPRIRAIDLDQNTVVALSVGLVSVAIGIGIPVFYETQIDNAAKRENTQPCFPCSGSGAQR
        MTVAPSLSRLHSPFLYCPLKPT S SLS+TFS NQRSP SYPRIRAIDLDQNTVVALSVGL S+A+GIGIPVFYETQIDNAAKRENTQPCFPC+GSGAQR
Subjt:  MTVAPSLSRLHSPFLYCPLKPTPSTSLSVTFSGNQRSPPSYPRIRAIDLDQNTVVALSVGLVSVAIGIGIPVFYETQIDNAAKRENTQPCFPCSGSGAQR

Query:  CRFCMGTGNVTVELGGDDKEVSRCINCDGVGTLTCTTCQGSGIQPRYLDRREFKDDD
        CRFCMGTGNVTVELGGD+KEVSRCINCDGVGTLTCTTCQGSGIQPRYLDRREFKDDD
Subjt:  CRFCMGTGNVTVELGGDDKEVSRCINCDGVGTLTCTTCQGSGIQPRYLDRREFKDDD

XP_038899789.1 protein SPA, chloroplastic [Benincasa hispida]

1.67e-106

94.9

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Query:  MTVAPSLSRLHSPFLYCPLKPTPSTSLSVTFSGNQRSPPSYPRIRAIDLDQNTVVALSVGLVSVAIGIGIPVFYETQIDNAAKRENTQPCFPCSGSGAQR
        MTVAPS+SRLHSPFLYCPLKPT STSLSVTFS NQRSP +YPRIRAIDLDQNTVVALSVGLVSVA+GIGIPVFYETQIDNAAKRENTQPCFPCSGSGAQR
Subjt:  MTVAPSLSRLHSPFLYCPLKPTPSTSLSVTFSGNQRSPPSYPRIRAIDLDQNTVVALSVGLVSVAIGIGIPVFYETQIDNAAKRENTQPCFPCSGSGAQR

Query:  CRFCMGTGNVTVELGGDDKEVSRCINCDGVGTLTCTTCQGSGIQPRYLDRREFKDDD
        CRFCMGTGNVTVELGGD+KEVSRCINCDG GTLTCTTCQGSGIQPRYLDRREFKDDD
Subjt:  CRFCMGTGNVTVELGGDDKEVSRCINCDGVGTLTCTTCQGSGIQPRYLDRREFKDDD

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LJ55 Uncharacterized protein

9.10e-113

100

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Query:  MTVAPSLSRLHSPFLYCPLKPTPSTSLSVTFSGNQRSPPSYPRIRAIDLDQNTVVALSVGLVSVAIGIGIPVFYETQIDNAAKRENTQPCFPCSGSGAQR
        MTVAPSLSRLHSPFLYCPLKPTPSTSLSVTFSGNQRSPPSYPRIRAIDLDQNTVVALSVGLVSVAIGIGIPVFYETQIDNAAKRENTQPCFPCSGSGAQR
Subjt:  MTVAPSLSRLHSPFLYCPLKPTPSTSLSVTFSGNQRSPPSYPRIRAIDLDQNTVVALSVGLVSVAIGIGIPVFYETQIDNAAKRENTQPCFPCSGSGAQR

Query:  CRFCMGTGNVTVELGGDDKEVSRCINCDGVGTLTCTTCQGSGIQPRYLDRREFKDDD
        CRFCMGTGNVTVELGGDDKEVSRCINCDGVGTLTCTTCQGSGIQPRYLDRREFKDDD
Subjt:  CRFCMGTGNVTVELGGDDKEVSRCINCDGVGTLTCTTCQGSGIQPRYLDRREFKDDD

A0A1S3CRE4 protein SPA, chloroplastic

8.75e-111

98.09

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Query:  MTVAPSLSRLHSPFLYCPLKPTPSTSLSVTFSGNQRSPPSYPRIRAIDLDQNTVVALSVGLVSVAIGIGIPVFYETQIDNAAKRENTQPCFPCSGSGAQR
        MTVAPSLSRLHSPFLYCPLKPT STSLSVTFSGNQRSPPSYPRIRAIDLDQNTVVALSVGLVSVA+GIGIPVFYETQIDNAAKRENTQPCFPCSGSGAQR
Subjt:  MTVAPSLSRLHSPFLYCPLKPTPSTSLSVTFSGNQRSPPSYPRIRAIDLDQNTVVALSVGLVSVAIGIGIPVFYETQIDNAAKRENTQPCFPCSGSGAQR

Query:  CRFCMGTGNVTVELGGDDKEVSRCINCDGVGTLTCTTCQGSGIQPRYLDRREFKDDD
        CRFCMGTGNVTVELGGD+KEVSRCINCDGVGTLTCTTCQGSGIQPRYLDRREFKDDD
Subjt:  CRFCMGTGNVTVELGGDDKEVSRCINCDGVGTLTCTTCQGSGIQPRYLDRREFKDDD

A0A6J1CMU6 protein SPA, chloroplastic

1.83e-103

92.36

Show/hide

Query:  MTVAPSLSRLHSPFLYCPLKPTPSTSLSVTFSGNQRSPPSYPRIRAIDLDQNTVVALSVGLVSVAIGIGIPVFYETQIDNAAKRENTQPCFPCSGSGAQR
        MT APSLSRLHSPFLY PLKPT + SLS+TFS NQRSP SYPRIRAIDLDQNTVVALSVGLVSVA+GIGIPVFYETQIDNAAKRENTQPCFPCSGSGAQ+
Subjt:  MTVAPSLSRLHSPFLYCPLKPTPSTSLSVTFSGNQRSPPSYPRIRAIDLDQNTVVALSVGLVSVAIGIGIPVFYETQIDNAAKRENTQPCFPCSGSGAQR

Query:  CRFCMGTGNVTVELGGDDKEVSRCINCDGVGTLTCTTCQGSGIQPRYLDRREFKDDD
        CRFCMGTGNVTVELGGD+KEVSRCINC+GVGTLTCTTCQGSGIQPRYLDRREFKDDD
Subjt:  CRFCMGTGNVTVELGGDDKEVSRCINCDGVGTLTCTTCQGSGIQPRYLDRREFKDDD

A0A6J1F877 protein SPA, chloroplastic

1.34e-105

93.63

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Query:  MTVAPSLSRLHSPFLYCPLKPTPSTSLSVTFSGNQRSPPSYPRIRAIDLDQNTVVALSVGLVSVAIGIGIPVFYETQIDNAAKRENTQPCFPCSGSGAQR
        MTVAPSLSRLHSPFLYCPLKPT S SLS+TFS NQRSP SYPRIRAIDLDQNTVVALSVGL S+A+GIGIPVFYETQIDNAAKRENTQPCFPC+GSGAQR
Subjt:  MTVAPSLSRLHSPFLYCPLKPTPSTSLSVTFSGNQRSPPSYPRIRAIDLDQNTVVALSVGLVSVAIGIGIPVFYETQIDNAAKRENTQPCFPCSGSGAQR

Query:  CRFCMGTGNVTVELGGDDKEVSRCINCDGVGTLTCTTCQGSGIQPRYLDRREFKDDD
        CRFCMGTGNVTVELGGD+KEVSRCINCDGVGTLTCTTCQGSGIQPRYLDRREFKDDD
Subjt:  CRFCMGTGNVTVELGGDDKEVSRCINCDGVGTLTCTTCQGSGIQPRYLDRREFKDDD

A0A6J1IFD3 protein SPA, chloroplastic

1.34e-105

93.63

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Query:  MTVAPSLSRLHSPFLYCPLKPTPSTSLSVTFSGNQRSPPSYPRIRAIDLDQNTVVALSVGLVSVAIGIGIPVFYETQIDNAAKRENTQPCFPCSGSGAQR
        MTVAPSLSRLHSPFLYCPLKPT S SLS+TFS NQRSP SYPRIRAIDLDQNTVVALSVGL S+A+GIGIPVFYETQIDNAAKRENTQPCFPC+GSGAQR
Subjt:  MTVAPSLSRLHSPFLYCPLKPTPSTSLSVTFSGNQRSPPSYPRIRAIDLDQNTVVALSVGLVSVAIGIGIPVFYETQIDNAAKRENTQPCFPCSGSGAQR

Query:  CRFCMGTGNVTVELGGDDKEVSRCINCDGVGTLTCTTCQGSGIQPRYLDRREFKDDD
        CRFCMGTGNVTVELGGD+KEVSRCINCDGVGTLTCTTCQGSGIQPRYLDRREFKDDD
Subjt:  CRFCMGTGNVTVELGGDDKEVSRCINCDGVGTLTCTTCQGSGIQPRYLDRREFKDDD

SwissProt top hits

e value

%identity

Alignment

K4BVL1 Protein SPA, chloroplastic

2.2e-63

74.84

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Query:  MTVAPSLSRLHSPFLYCPLK-PTPSTS-LSVTFSGNQRSPPSYPRIRAIDLDQNTVVALSVGLVSVAIGIGIPVFYETQIDNAAKRENTQPCFPCSGSGA
        M  APSLSR  SPF+  PLK PT S+S  +  F    R   SYP I+A+DLDQNTV+A++VG++SVAIG+GIPVFYETQIDNAAKRENTQPCFPC+G+GA
Subjt:  MTVAPSLSRLHSPFLYCPLK-PTPSTS-LSVTFSGNQRSPPSYPRIRAIDLDQNTVVALSVGLVSVAIGIGIPVFYETQIDNAAKRENTQPCFPCSGSGA

Query:  QRCRFCMGTGNVTVELGGDDKEVSRCINCDGVGTLTCTTCQGSGIQPRYLDRREFKDDD
        Q+CRFCMGTG+VTVELGG + EVSRCINCDG G LTCTTCQGSGIQPRYLDRREFKDDD
Subjt:  QRCRFCMGTGNVTVELGGDDKEVSRCINCDGVGTLTCTTCQGSGIQPRYLDRREFKDDD

Q8GSJ6 Protein disulfide-isomerase LQY1, chloroplastic

1.1e-62

75.64

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Query:  APSLSRLHSPFLYCPLKPTPSTSLSVTFSG-NQRSP-PSYPRIRAIDLDQNTVVALSVGLVSVAIGIGIPVFYETQIDNAAKRENTQPCFPCSGSGAQRC
        APS  RLHSPF++CP+  TPS     +FS  N RSP  SYPRI+A +LD NTVVA+SVG+ SVA+GIGIPVFYETQIDNAAKRENTQPCFPC+G+GAQ+C
Subjt:  APSLSRLHSPFLYCPLKPTPSTSLSVTFSG-NQRSP-PSYPRIRAIDLDQNTVVALSVGLVSVAIGIGIPVFYETQIDNAAKRENTQPCFPCSGSGAQRC

Query:  RFCMGTGNVTVELGGDDKEVSRCINCDGVGTLTCTTCQGSGIQPRYLDRREFKDDD
        R C+G+GNVTVELGG +KEVS CINCDG G+LTCTTCQGSG+QPRYLDRREFKDDD
Subjt:  RFCMGTGNVTVELGGDDKEVSRCINCDGVGTLTCTTCQGSGIQPRYLDRREFKDDD

Arabidopsis top hits

e value

%identity

Alignment

AT1G75690.1 DnaJ/Hsp40 cysteine-rich domain superfamily protein

7.7e-64

75.64

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Query:  APSLSRLHSPFLYCPLKPTPSTSLSVTFSG-NQRSP-PSYPRIRAIDLDQNTVVALSVGLVSVAIGIGIPVFYETQIDNAAKRENTQPCFPCSGSGAQRC
        APS  RLHSPF++CP+  TPS     +FS  N RSP  SYPRI+A +LD NTVVA+SVG+ SVA+GIGIPVFYETQIDNAAKRENTQPCFPC+G+GAQ+C
Subjt:  APSLSRLHSPFLYCPLKPTPSTSLSVTFSG-NQRSP-PSYPRIRAIDLDQNTVVALSVGLVSVAIGIGIPVFYETQIDNAAKRENTQPCFPCSGSGAQRC

Query:  RFCMGTGNVTVELGGDDKEVSRCINCDGVGTLTCTTCQGSGIQPRYLDRREFKDDD
        R C+G+GNVTVELGG +KEVS CINCDG G+LTCTTCQGSG+QPRYLDRREFKDDD
Subjt:  RFCMGTGNVTVELGGDDKEVSRCINCDGVGTLTCTTCQGSGIQPRYLDRREFKDDD

AT4G13670.1 plastid transcriptionally active 5

9.0e-04

30.48

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Query:  RAIDLDQNTVVALSVGL---VSVAIGIGIPVFYETQIDNAAKRENTQPCFPCSGSGAQRCRFCMGTGNVTVE------LGGDDKEVSRCINCDGVGTLTC
        R +D+ QN V  L        S  IG   PV      D +        C  C G G   C  C GTG   +E      +G D K    C  C+G+G   C
Subjt:  RAIDLDQNTVVALSVGL---VSVAIGIGIPVFYETQIDNAAKRENTQPCFPCSGSGAQRCRFCMGTGNVTVE------LGGDDKEVSRCINCDGVGTLTC

Query:  TTCQG
          C G
Subjt:  TTCQG

Sequences

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CDS sequence

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ATGACAGTAGCACCTTCGCTTTCCCGCCTCCATTCTCCATTTCTGTATTGTCCTCTCAAGCCAACTCCATCTACCTCTTTATCAGTCACATTCTCTGGAAATCAACGATC
GCCACCATCATATCCACGCATCAGAGCAATAGATCTTGACCAAAACACGGTGGTGGCACTTTCAGTTGGGCTGGTGAGTGTTGCAATTGGAATAGGTATTCCCGTCTTCT
ACGAAACCCAAATTGATAATGCTGCAAAGCGTGAAAATACTCAGCCCTGCTTTCCCTGCAGTGGTTCAGGAGCACAGAGATGCAGATTTTGCATGGGAACTGGCAATGTG
ACCGTAGAACTTGGTGGAGATGACAAAGAAGTCTCCCGGTGTATTAACTGTGATGGTGTTGGCACATTGACATGTACTACATGTCAGGGCTCTGGAATTCAACCTCGATA
CCTAGATCGCAGAGAATTTAAAGATGATGATTGA

mRNA sequence

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Protein sequence

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MTVAPSLSRLHSPFLYCPLKPTPSTSLSVTFSGNQRSPPSYPRIRAIDLDQNTVVALSVGLVSVAIGIGIPVFYETQIDNAAKRENTQPCFPCSGSGAQRCRFCMGTGNV
TVELGGDDKEVSRCINCDGVGTLTCTTCQGSGIQPRYLDRREFKDDD

Cucsat.G12897 (gene) of Cucumber (B10) v3 genome