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Cucsat.G1299 (gene) of Cucumber (B10) v3 genome

Gene IDCucsat.G1299
OrganismCucumis sativus L. var. sativus cv. B10 (Cucumber (B10) v3)
DescriptionDNA-directed RNA polymerase subunit
Genome locationctg1:11105001..11107430
RNA-Seq ExpressionCucsat.G1299
SyntenyCucsat.G1299
Gene Ontology termsGO:0001193 - maintenance of transcriptional fidelity during DNA-templated transcription elongation from RNA polymerase II promoter (biological process)
GO:0006283 - transcription-coupled nucleotide-excision repair (biological process)
GO:0006367 - transcription initiation from RNA polymerase II promoter (biological process)
GO:0006379 - mRNA cleavage (biological process)
GO:0005665 - RNA polymerase II, core complex (cellular component)
GO:0005730 - nucleolus (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001222 - Zinc finger, TFIIS-type
IPR001529 - DNA-directed RNA polymerase, M/15kDa subunit
IPR012164 - DNA-directed RNA polymerase subunit/transcription factor S
IPR019761 - DNA-directed RNA polymerase M, 15kDa subunit, conserved site
IPR034012 - Pol II subunit B9, C-terminal zinc ribbon


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA8527386.1 hypothetical protein F0562_034899 [Nyssa sinensis]4.87e-8296.49Show/hide
Query:  MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQEVADNNCVYRNEIHHAVGERTQVLQDVAADPTLPRTKAVRCAQCNHGEAVFFQATARGEEGMTLF
        MSTMKFCRECNNILYPKED+++KILLYACRNCDHQEVADNNCVYRNEIHHAVGERTQVLQDVAADPTLPRTK+VRCAQCNHGEAVFFQATARGEEGMTLF
Subjt:  MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQEVADNNCVYRNEIHHAVGERTQVLQDVAADPTLPRTKAVRCAQCNHGEAVFFQATARGEEGMTLF

Query:  FVCCNPNCGHRWRD
        FVCCNPNCGHRWRD
Subjt:  FVCCNPNCGHRWRD

XP_008438942.1 PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 9A [Cucumis melo]5.07e-84100Show/hide
Query:  MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQEVADNNCVYRNEIHHAVGERTQVLQDVAADPTLPRTKAVRCAQCNHGEAVFFQATARGEEGMTLF
        MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQEVADNNCVYRNEIHHAVGERTQVLQDVAADPTLPRTKAVRCAQCNHGEAVFFQATARGEEGMTLF
Subjt:  MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQEVADNNCVYRNEIHHAVGERTQVLQDVAADPTLPRTKAVRCAQCNHGEAVFFQATARGEEGMTLF

Query:  FVCCNPNCGHRWRD
        FVCCNPNCGHRWRD
Subjt:  FVCCNPNCGHRWRD

XP_024019992.1 DNA-directed RNA polymerases II, IV and V subunit 9A [Morus notabilis]1.20e-8297.37Show/hide
Query:  MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQEVADNNCVYRNEIHHAVGERTQVLQDVAADPTLPRTKAVRCAQCNHGEAVFFQATARGEEGMTLF
        MSTMKFCRECNNILYPKEDRD+KILLYACRNCDHQEVADNNCVYRNEIHH+VGERTQVLQDVAADPTLPRTK+VRCAQCNHGEAVFFQATARGEEGMTLF
Subjt:  MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQEVADNNCVYRNEIHHAVGERTQVLQDVAADPTLPRTKAVRCAQCNHGEAVFFQATARGEEGMTLF

Query:  FVCCNPNCGHRWRD
        FVCCNPNCGHRWRD
Subjt:  FVCCNPNCGHRWRD

XP_024963039.1 DNA-directed RNA polymerases II, IV and V subunit 9A [Cynara cardunculus var. scolymus]3.43e-8297.37Show/hide
Query:  MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQEVADNNCVYRNEIHHAVGERTQVLQDVAADPTLPRTKAVRCAQCNHGEAVFFQATARGEEGMTLF
        MSTMKFCRECNNILYPKED+D+KILLYACRNCDHQEVADNNCVYRNEIHHAVGERTQVLQDVAADPTLPRTKAVRCAQC HGEAVFFQATARGEEGMTLF
Subjt:  MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQEVADNNCVYRNEIHHAVGERTQVLQDVAADPTLPRTKAVRCAQCNHGEAVFFQATARGEEGMTLF

Query:  FVCCNPNCGHRWRD
        FVCCNPNCGHRWRD
Subjt:  FVCCNPNCGHRWRD

XP_030503042.1 DNA-directed RNA polymerases II, IV and V subunit 9A [Cannabis sativa]1.45e-8399.12Show/hide
Query:  MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQEVADNNCVYRNEIHHAVGERTQVLQDVAADPTLPRTKAVRCAQCNHGEAVFFQATARGEEGMTLF
        MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQEVADNNCVYRNEIHH+VGERTQVLQDVAADPTLPRTKAVRCAQCNHGEAVFFQATARGEEGMTLF
Subjt:  MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQEVADNNCVYRNEIHHAVGERTQVLQDVAADPTLPRTKAVRCAQCNHGEAVFFQATARGEEGMTLF

Query:  FVCCNPNCGHRWRD
        FVCCNPNCGHRWRD
Subjt:  FVCCNPNCGHRWRD

TrEMBL top hitse value%identityAlignment
A0A0A0L816 DNA-directed RNA polymerase subunit2.46e-84100Show/hide
Query:  MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQEVADNNCVYRNEIHHAVGERTQVLQDVAADPTLPRTKAVRCAQCNHGEAVFFQATARGEEGMTLF
        MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQEVADNNCVYRNEIHHAVGERTQVLQDVAADPTLPRTKAVRCAQCNHGEAVFFQATARGEEGMTLF
Subjt:  MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQEVADNNCVYRNEIHHAVGERTQVLQDVAADPTLPRTKAVRCAQCNHGEAVFFQATARGEEGMTLF

Query:  FVCCNPNCGHRWRD
        FVCCNPNCGHRWRD
Subjt:  FVCCNPNCGHRWRD

A0A5A7U5C7 DNA-directed RNA polymerase subunit2.46e-84100Show/hide
Query:  MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQEVADNNCVYRNEIHHAVGERTQVLQDVAADPTLPRTKAVRCAQCNHGEAVFFQATARGEEGMTLF
        MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQEVADNNCVYRNEIHHAVGERTQVLQDVAADPTLPRTKAVRCAQCNHGEAVFFQATARGEEGMTLF
Subjt:  MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQEVADNNCVYRNEIHHAVGERTQVLQDVAADPTLPRTKAVRCAQCNHGEAVFFQATARGEEGMTLF

Query:  FVCCNPNCGHRWRD
        FVCCNPNCGHRWRD
Subjt:  FVCCNPNCGHRWRD

A0A6J1CBU6 DNA-directed RNA polymerase subunit2.46e-84100Show/hide
Query:  MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQEVADNNCVYRNEIHHAVGERTQVLQDVAADPTLPRTKAVRCAQCNHGEAVFFQATARGEEGMTLF
        MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQEVADNNCVYRNEIHHAVGERTQVLQDVAADPTLPRTKAVRCAQCNHGEAVFFQATARGEEGMTLF
Subjt:  MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQEVADNNCVYRNEIHHAVGERTQVLQDVAADPTLPRTKAVRCAQCNHGEAVFFQATARGEEGMTLF

Query:  FVCCNPNCGHRWRD
        FVCCNPNCGHRWRD
Subjt:  FVCCNPNCGHRWRD

A0A6J1FM50 DNA-directed RNA polymerase subunit2.46e-84100Show/hide
Query:  MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQEVADNNCVYRNEIHHAVGERTQVLQDVAADPTLPRTKAVRCAQCNHGEAVFFQATARGEEGMTLF
        MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQEVADNNCVYRNEIHHAVGERTQVLQDVAADPTLPRTKAVRCAQCNHGEAVFFQATARGEEGMTLF
Subjt:  MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQEVADNNCVYRNEIHHAVGERTQVLQDVAADPTLPRTKAVRCAQCNHGEAVFFQATARGEEGMTLF

Query:  FVCCNPNCGHRWRD
        FVCCNPNCGHRWRD
Subjt:  FVCCNPNCGHRWRD

A0A6J1I879 DNA-directed RNA polymerase subunit2.46e-84100Show/hide
Query:  MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQEVADNNCVYRNEIHHAVGERTQVLQDVAADPTLPRTKAVRCAQCNHGEAVFFQATARGEEGMTLF
        MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQEVADNNCVYRNEIHHAVGERTQVLQDVAADPTLPRTKAVRCAQCNHGEAVFFQATARGEEGMTLF
Subjt:  MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQEVADNNCVYRNEIHHAVGERTQVLQDVAADPTLPRTKAVRCAQCNHGEAVFFQATARGEEGMTLF

Query:  FVCCNPNCGHRWRD
        FVCCNPNCGHRWRD
Subjt:  FVCCNPNCGHRWRD

SwissProt top hitse value%identityAlignment
P36954 DNA-directed RNA polymerase II subunit RPB99.6e-3858.93Show/hide
Query:  MKFCRECNNILYPKEDRDEKILLYACRNCDHQEVADNNCVYRNEIHHAVGERTQVLQDVAADPTLPRTKAVRCAQCNHGEAVFFQA-TARGEEGMTLFFV
        ++FC+ECNN+LYPKED++ +ILLYACRNCD+Q+ ADN+C+Y N+I H V E TQ++ DV+ DPTLPRT+   C +C H EAVFFQ+ +AR E+ M L++V
Subjt:  MKFCRECNNILYPKEDRDEKILLYACRNCDHQEVADNNCVYRNEIHHAVGERTQVLQDVAADPTLPRTKAVRCAQCNHGEAVFFQA-TARGEEGMTLFFV

Query:  CCNPNCGHRWRD
        C  P+CGHRW +
Subjt:  CCNPNCGHRWRD

P60898 DNA-directed RNA polymerase II subunit RPB99.6e-3858.93Show/hide
Query:  MKFCRECNNILYPKEDRDEKILLYACRNCDHQEVADNNCVYRNEIHHAVGERTQVLQDVAADPTLPRTKAVRCAQCNHGEAVFFQA-TARGEEGMTLFFV
        ++FC+ECNN+LYPKED++ +ILLYACRNCD+Q+ ADN+C+Y N+I H V E TQ++ DV+ DPTLPRT+   C +C H EAVFFQ+ +AR E+ M L++V
Subjt:  MKFCRECNNILYPKEDRDEKILLYACRNCDHQEVADNNCVYRNEIHHAVGERTQVLQDVAADPTLPRTKAVRCAQCNHGEAVFFQA-TARGEEGMTLFFV

Query:  CCNPNCGHRWRD
        C  P+CGHRW +
Subjt:  CCNPNCGHRWRD

Q32P73 DNA-directed RNA polymerase II subunit RPB99.6e-3858.93Show/hide
Query:  MKFCRECNNILYPKEDRDEKILLYACRNCDHQEVADNNCVYRNEIHHAVGERTQVLQDVAADPTLPRTKAVRCAQCNHGEAVFFQA-TARGEEGMTLFFV
        ++FC+ECNN+LYPKED++ +ILLYACRNCD+Q+ ADN+C+Y N+I H V E TQ++ DV+ DPTLPRT+   C +C H EAVFFQ+ +AR E+ M L++V
Subjt:  MKFCRECNNILYPKEDRDEKILLYACRNCDHQEVADNNCVYRNEIHHAVGERTQVLQDVAADPTLPRTKAVRCAQCNHGEAVFFQA-TARGEEGMTLFFV

Query:  CCNPNCGHRWRD
        C  P+CGHRW +
Subjt:  CCNPNCGHRWRD

Q6NLH0 DNA-directed RNA polymerases II, IV and V subunit 9A1.5e-5986.84Show/hide
Query:  MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQEVADNNCVYRNEIHHAVGERTQVLQDVAADPTLPRTKAVRCAQCNHGEAVFFQATARGEEGMTLF
        MSTMKFCRECNNILYPKED+++KILLYACRNCDHQEVADN+CVYRNE+HH+V ERTQ+L DVA+DPTLPRTKAVRC++C H EAVFFQATARGEEGMTLF
Subjt:  MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQEVADNNCVYRNEIHHAVGERTQVLQDVAADPTLPRTKAVRCAQCNHGEAVFFQATARGEEGMTLF

Query:  FVCCNPNCGHRWRD
        FVCCNPNCGHRWR+
Subjt:  FVCCNPNCGHRWRD

Q8L5V0 DNA-directed RNA polymerases II, IV and V subunit 9B2.6e-5985.96Show/hide
Query:  MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQEVADNNCVYRNEIHHAVGERTQVLQDVAADPTLPRTKAVRCAQCNHGEAVFFQATARGEEGMTLF
        MSTMKFCRECNNILYPKED+++ ILLYACRNCDHQE ADNNCVYRNE+HH+V E+TQ+L DVA+DPTLPRTKAVRCA+C HGEAVFFQATARGEEGMTLF
Subjt:  MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQEVADNNCVYRNEIHHAVGERTQVLQDVAADPTLPRTKAVRCAQCNHGEAVFFQATARGEEGMTLF

Query:  FVCCNPNCGHRWRD
        FVCCNPNC HRWR+
Subjt:  FVCCNPNCGHRWRD

Arabidopsis top hitse value%identityAlignment
AT3G16980.1 RNA polymerases M/15 Kd subunit1.1e-6086.84Show/hide
Query:  MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQEVADNNCVYRNEIHHAVGERTQVLQDVAADPTLPRTKAVRCAQCNHGEAVFFQATARGEEGMTLF
        MSTMKFCRECNNILYPKED+++KILLYACRNCDHQEVADN+CVYRNE+HH+V ERTQ+L DVA+DPTLPRTKAVRC++C H EAVFFQATARGEEGMTLF
Subjt:  MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQEVADNNCVYRNEIHHAVGERTQVLQDVAADPTLPRTKAVRCAQCNHGEAVFFQATARGEEGMTLF

Query:  FVCCNPNCGHRWRD
        FVCCNPNCGHRWR+
Subjt:  FVCCNPNCGHRWRD

AT4G16265.1 RNA polymerases M/15 Kd subunit1.8e-6085.96Show/hide
Query:  MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQEVADNNCVYRNEIHHAVGERTQVLQDVAADPTLPRTKAVRCAQCNHGEAVFFQATARGEEGMTLF
        MSTMKFCRECNNILYPKED+++ ILLYACRNCDHQE ADNNCVYRNE+HH+V E+TQ+L DVA+DPTLPRTKAVRCA+C HGEAVFFQATARGEEGMTLF
Subjt:  MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQEVADNNCVYRNEIHHAVGERTQVLQDVAADPTLPRTKAVRCAQCNHGEAVFFQATARGEEGMTLF

Query:  FVCCNPNCGHRWRD
        FVCCNPNC HRWR+
Subjt:  FVCCNPNCGHRWRD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GATTTGGGCTGTGGAATTGGAAGCCCATTTACAAGTCTACACTTTCTCCCGCCATTGGAAGAAAGCTCTTGTGTTCGGCTTGAATCCTTGATCGACGTTTCTGGAAGGAA
GCGCAGGCTTCTCTCTTCTTCTACCCTCTACAAGATGAGTACCATGAAGTTTTGCCGGGAATGTAACAACATTCTCTATCCGAAGGAGGATAGAGATGAGAAGATTCTTC
TCTATGCCTGTCGCAACTGTGATCACCAGGAAGTCGCTGACAATAACTGCGTCTATAGGAATGAGATTCATCATGCTGTAGGAGAACGCACTCAAGTTTTGCAAGATGTT
GCTGCAGATCCAACTCTCCCTCGCACTAAAGCTGTCCGATGTGCTCAATGCAACCATGGAGAAGCTGTTTTCTTCCAGGCCACTGCCAGAGGAGAGGAAGGTATGACATT
GTTCTTCGTTTGCTGCAATCCAAATTGTGGCCACAGATGGAGAGATTGA
mRNA sequenceShow/hide mRNA sequence
GATTTGGGCTGTGGAATTGGAAGCCCATTTACAAGTCTACACTTTCTCCCGCCATTGGAAGAAAGCTCTTGTGTTCGGCTTGAATCCTTGATCGACGTTTCTGGAAGGAA
GCGCAGGCTTCTCTCTTCTTCTACCCTCTACAAGATGAGTACCATGAAGTTTTGCCGGGAATGTAACAACATTCTCTATCCGAAGGAGGATAGAGATGAGAAGATTCTTC
TCTATGCCTGTCGCAACTGTGATCACCAGGAAGTCGCTGACAATAACTGCGTCTATAGGAATGAGATTCATCATGCTGTAGGAGAACGCACTCAAGTTTTGCAAGATGTT
GCTGCAGATCCAACTCTCCCTCGCACTAAAGCTGTCCGATGTGCTCAATGCAACCATGGAGAAGCTGTTTTCTTCCAGGCCACTGCCAGAGGAGAGGAAGGTATGACATT
GTTCTTCGTTTGCTGCAATCCAAATTGTGGCCACAGATGGAGAGATTGA
Protein sequenceShow/hide protein sequence
DLGCGIGSPFTSLHFLPPLEESSCVRLESLIDVSGRKRRLLSSSTLYKMSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQEVADNNCVYRNEIHHAVGERTQVLQDV
AADPTLPRTKAVRCAQCNHGEAVFFQATARGEEGMTLFFVCCNPNCGHRWRD