CuGenDBv2

Gene ID	Cucsat.G13434
Organism	Cucumis sativus L. var. sativus cv. B10 (Cucumber (B10) v3)
Description	Mitochondrial
Genome location	ctg1838:6645805..6648462
RNA-Seq Expression	Cucsat.G13434
Synteny	Cucsat.G13434
Gene Ontology terms	GO:0005762 - mitochondrial large ribosomal subunit (cellular component)
InterPro domains	IPR019716 - Ribosomal protein L53, mitochondrial

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0063266.1 Mitochondrial [Cucumis melo var. makuwa]

3.64e-77

92.06

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Query:  MLKFLSKVKIEFNALDPRLACCMEFLAQCNASKAKESNPACQLIVKRRTDDHPPQIAVTFVNGVEEVFDATSTPAQTIRSMILEKGQLLETEQMFREAGE
        MLKFLSKVKIEFNALDPRLACCMEFLAQCNA+K+KESNPACQLIVKRRTDDHPPQIAVTFVNGVEEVFDATS  AQTIR+MILEKGQLLETEQMFREAGE
Subjt:  MLKFLSKVKIEFNALDPRLACCMEFLAQCNASKAKESNPACQLIVKRRTDDHPPQIAVTFVNGVEEVFDATSTPAQTIRSMILEKGQLLETEQMFREAGE

Query:  AWPVIIPDEELKQPFTGIKVRAFLLP
        AWPVIIP+EELKQP T IKVRA  LP
Subjt:  AWPVIIPDEELKQPFTGIKVRAFLLP

KAG7024167.1 hypothetical protein SDJN02_12980, partial [Cucurbita argyrosperma subsp. argyrosperma]

3.25e-74

90.48

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Query:  MLKFLSKVKIEFNALDPRLACCMEFLAQCNASKAKESNPACQLIVKRRTDDHPPQIAVTFVNGVEEVFDATSTPAQTIRSMILEKGQLLETEQMFREAGE
        MLKFLSKV+IEFNALDPRLA CMEFLAQCNA KAKESNPACQLIVKRRTDDHPPQIAVTFVNGVEEVFDATSTP+QTIR+MILEKGQLLETEQMFREAGE
Subjt:  MLKFLSKVKIEFNALDPRLACCMEFLAQCNASKAKESNPACQLIVKRRTDDHPPQIAVTFVNGVEEVFDATSTPAQTIRSMILEKGQLLETEQMFREAGE

Query:  AWPVIIPDEELKQPFTGIKVRAFLLP
         WPVIIPDEEL QP   IKVR  LLP
Subjt:  AWPVIIPDEELKQPFTGIKVRAFLLP

XP_004147839.1 uncharacterized protein LOC101217531 [Cucumis sativus]

2.42e-80

99.17

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Query:  MLKFLSKVKIEFNALDPRLACCMEFLAQCNASKAKESNPACQLIVKRRTDDHPPQIAVTFVNGVEEVFDATSTPAQTIRSMILEKGQLLETEQMFREAGE
        MLKFLSKVKIEFNALDPRLACCMEFLAQCNASKAKESNPACQLIVKRRTDDHPPQIAVTFVNGVEEVFDATSTPAQTIRSMILEKGQLLETEQMFREAGE
Subjt:  MLKFLSKVKIEFNALDPRLACCMEFLAQCNASKAKESNPACQLIVKRRTDDHPPQIAVTFVNGVEEVFDATSTPAQTIRSMILEKGQLLETEQMFREAGE

Query:  AWPVIIPDEELKQPFTGIKVR
        AWPVIIPDEELKQPFTGIK R
Subjt:  AWPVIIPDEELKQPFTGIKVR

XP_008466507.1 PREDICTED: uncharacterized protein LOC103503897 [Cucumis melo]

2.05e-74

92.56

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Query:  MLKFLSKVKIEFNALDPRLACCMEFLAQCNASKAKESNPACQLIVKRRTDDHPPQIAVTFVNGVEEVFDATSTPAQTIRSMILEKGQLLETEQMFREAGE
        MLKFLSKVKIEFNALDPRLACCMEFLAQCNA+K+KESNPACQLIVKRRTDDHPPQIAVTFVNGVEEVFDATS  AQTIR+MILEKGQLLETEQMFREAGE
Subjt:  MLKFLSKVKIEFNALDPRLACCMEFLAQCNASKAKESNPACQLIVKRRTDDHPPQIAVTFVNGVEEVFDATSTPAQTIRSMILEKGQLLETEQMFREAGE

Query:  AWPVIIPDEELKQPFTGIKVR
        AWPVIIP+EELKQP T IK R
Subjt:  AWPVIIPDEELKQPFTGIKVR

XP_038896893.1 uncharacterized protein LOC120085105 [Benincasa hispida]

1.82e-75

94.21

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Query:  MLKFLSKVKIEFNALDPRLACCMEFLAQCNASKAKESNPACQLIVKRRTDDHPPQIAVTFVNGVEEVFDATSTPAQTIRSMILEKGQLLETEQMFREAGE
        MLKFLSKVKIEFNALDPRLA CMEFLAQCNA KAKESNPACQLIVKRRTDDHPPQIAVTFVNGVEEVFDATSTPAQTIR+MILEKGQLLETEQMFREAGE
Subjt:  MLKFLSKVKIEFNALDPRLACCMEFLAQCNASKAKESNPACQLIVKRRTDDHPPQIAVTFVNGVEEVFDATSTPAQTIRSMILEKGQLLETEQMFREAGE

Query:  AWPVIIPDEELKQPFTGIKVR
         WPVIIPDEELKQP +GIK R
Subjt:  AWPVIIPDEELKQPFTGIKVR

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LGG5 Uncharacterized protein

1.17e-80

99.17

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Query:  MLKFLSKVKIEFNALDPRLACCMEFLAQCNASKAKESNPACQLIVKRRTDDHPPQIAVTFVNGVEEVFDATSTPAQTIRSMILEKGQLLETEQMFREAGE
        MLKFLSKVKIEFNALDPRLACCMEFLAQCNASKAKESNPACQLIVKRRTDDHPPQIAVTFVNGVEEVFDATSTPAQTIRSMILEKGQLLETEQMFREAGE
Subjt:  MLKFLSKVKIEFNALDPRLACCMEFLAQCNASKAKESNPACQLIVKRRTDDHPPQIAVTFVNGVEEVFDATSTPAQTIRSMILEKGQLLETEQMFREAGE

Query:  AWPVIIPDEELKQPFTGIKVR
        AWPVIIPDEELKQPFTGIK R
Subjt:  AWPVIIPDEELKQPFTGIKVR

A0A1S3CRE8 uncharacterized protein LOC103503897

9.94e-75

92.56

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Query:  MLKFLSKVKIEFNALDPRLACCMEFLAQCNASKAKESNPACQLIVKRRTDDHPPQIAVTFVNGVEEVFDATSTPAQTIRSMILEKGQLLETEQMFREAGE
        MLKFLSKVKIEFNALDPRLACCMEFLAQCNA+K+KESNPACQLIVKRRTDDHPPQIAVTFVNGVEEVFDATS  AQTIR+MILEKGQLLETEQMFREAGE
Subjt:  MLKFLSKVKIEFNALDPRLACCMEFLAQCNASKAKESNPACQLIVKRRTDDHPPQIAVTFVNGVEEVFDATSTPAQTIRSMILEKGQLLETEQMFREAGE

Query:  AWPVIIPDEELKQPFTGIKVR
        AWPVIIP+EELKQP T IK R
Subjt:  AWPVIIPDEELKQPFTGIKVR

A0A5D3E6Q7 Mitochondrial

1.76e-77

92.06

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Query:  MLKFLSKVKIEFNALDPRLACCMEFLAQCNASKAKESNPACQLIVKRRTDDHPPQIAVTFVNGVEEVFDATSTPAQTIRSMILEKGQLLETEQMFREAGE
        MLKFLSKVKIEFNALDPRLACCMEFLAQCNA+K+KESNPACQLIVKRRTDDHPPQIAVTFVNGVEEVFDATS  AQTIR+MILEKGQLLETEQMFREAGE
Subjt:  MLKFLSKVKIEFNALDPRLACCMEFLAQCNASKAKESNPACQLIVKRRTDDHPPQIAVTFVNGVEEVFDATSTPAQTIRSMILEKGQLLETEQMFREAGE

Query:  AWPVIIPDEELKQPFTGIKVRAFLLP
        AWPVIIP+EELKQP T IKVRA  LP
Subjt:  AWPVIIPDEELKQPFTGIKVRAFLLP

A0A6J1IEW0 uncharacterized protein LOC111473560 isoform X1

3.99e-72

90.91

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Query:  MLKFLSKVKIEFNALDPRLACCMEFLAQCNASKAKESNPACQLIVKRRTDDHPPQIAVTFVNGVEEVFDATSTPAQTIRSMILEKGQLLETEQMFREAGE
        MLKFLSKVKIEFNALDPRL  CMEFLAQCNA KAKESNPACQLIVKRRTDDHPPQI VTFVNGVEEVFDATSTPAQTIR+MILEKGQLLETEQMFREAGE
Subjt:  MLKFLSKVKIEFNALDPRLACCMEFLAQCNASKAKESNPACQLIVKRRTDDHPPQIAVTFVNGVEEVFDATSTPAQTIRSMILEKGQLLETEQMFREAGE

Query:  AWPVIIPDEELKQPFTGIKVR
         WPVIIPDEEL QP   IK R
Subjt:  AWPVIIPDEELKQPFTGIKVR

A0A6J1IHE6 uncharacterized protein LOC111473560 isoform X3

1.22e-72

90.91

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Query:  MLKFLSKVKIEFNALDPRLACCMEFLAQCNASKAKESNPACQLIVKRRTDDHPPQIAVTFVNGVEEVFDATSTPAQTIRSMILEKGQLLETEQMFREAGE
        MLKFLSKVKIEFNALDPRL  CMEFLAQCNA KAKESNPACQLIVKRRTDDHPPQI VTFVNGVEEVFDATSTPAQTIR+MILEKGQLLETEQMFREAGE
Subjt:  MLKFLSKVKIEFNALDPRLACCMEFLAQCNASKAKESNPACQLIVKRRTDDHPPQIAVTFVNGVEEVFDATSTPAQTIRSMILEKGQLLETEQMFREAGE

Query:  AWPVIIPDEELKQPFTGIKVR
         WPVIIPDEEL QP   IK+R
Subjt:  AWPVIIPDEELKQPFTGIKVR

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT5G39600.1 CONTAINS InterPro DOMAIN/s: Ribosomal protein L53, mitochondrial (InterPro:IPR019716); Has 50 Blast hits to 50 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).

5.3e-50

78.51

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Query:  MLKFLSKVKIEFNALDPRLACCMEFLAQCNASKAKESNPACQLIVKRRTDDHPPQIAVTFVNGVEEVFDATSTPAQTIRSMILEKGQLLETEQMFREAGE
        MLKFLSKV+IEFN LDPRLA C+EFLAQCNA KAKESNP CQ++VKRRTD+ PPQI VTFVNGVEE FDA +T AQ+IR MIL+KGQ LETEQMFREAGE
Subjt:  MLKFLSKVKIEFNALDPRLACCMEFLAQCNASKAKESNPACQLIVKRRTDDHPPQIAVTFVNGVEEVFDATSTPAQTIRSMILEKGQLLETEQMFREAGE

Query:  AWPVIIPDEELKQPFTGIKVR
         WPVIIPDEEL Q   G+K R
Subjt:  AWPVIIPDEELKQPFTGIKVR

Sequences

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CDS sequence

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ATGTTGAAGTTCCTATCTAAGGTGAAGATCGAATTCAATGCTCTCGATCCACGCTTAGCGTGTTGTATGGAATTCTTGGCGCAGTGTAATGCTTCCAAGGCGAAGGAATC
CAACCCCGCTTGCCAATTGATCGTCAAGCGCCGAACAGACGACCACCCTCCCCAGATCGCCGTCACCTTTGTCAATGGGGTCGAAGAGGTTTTTGACGCTACCTCTACTC
CTGCTCAAACAATTAGGAGTATGATTCTTGAAAAGGGTCAACTCCTTGAGACCGAGCAAATGTTCCGAGAAGCGGGGGAAGCTTGGCCAGTTATCATTCCCGATGAGGAG
CTCAAACAACCCTTTACCGGTATCAAGGTTCGTGCTTTTCTTCTCCCTTACTGTAAACCTTTTCTGGTCATCTTCTGCCGGAGTTTCATTTTTGTGTACTACCTGTGGCA
TTTTGTCGAACAATATATGTGCACGAATAGTTATTCGAACTTTCTACTTTTAAAATATATTAATTTTTTTTAA

mRNA sequence

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Protein sequence

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MLKFLSKVKIEFNALDPRLACCMEFLAQCNASKAKESNPACQLIVKRRTDDHPPQIAVTFVNGVEEVFDATSTPAQTIRSMILEKGQLLETEQMFREAGEAWPVIIPDEE
LKQPFTGIKVRAFLLPYCKPFLVIFCRSFIFVYYLWHFVEQYMCTNSYSNFLLLKYINFF

Cucsat.G13434 (gene) of Cucumber (B10) v3 genome