; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cucsat.G13517 (gene) of Cucumber (B10) v3 genome

Gene IDCucsat.G13517
OrganismCucumis sativus L. var. sativus cv. B10 (Cucumber (B10) v3)
DescriptionRNA-binding protein 38
Genome locationctg1838:8143840..8147575
RNA-Seq ExpressionCucsat.G13517
SyntenyCucsat.G13517
Gene Ontology termsGO:0030154 - cell differentiation (biological process)
GO:0003729 - mRNA binding (molecular function)
InterPro domainsIPR000504 - RNA recognition motif domain
IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily
IPR035979 - RNA-binding domain superfamily
IPR037366 - BOULE/DAZ family


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6591668.1 putative RNA-binding protein ARP1, partial [Cucurbita argyrosperma subsp. sororia]8.60e-9958.39Show/hide
Query:  YPHYRSQFGDTTFTKVFVGGLAWETPTDQMQTYFEQFGDILEAVIITDKNTSKSKGYGFVTFRDPESARRACANPNPIIDGRRANCNIAALGRPRPSPPR
        YPHYRSQFGDTTFTKVFVGGLAWETPTD+M+ YFEQFGDILEAVIITDKNTSKSKGYGFVTFRD ESARRACANPNP+IDGRRANCNIAA+GRPRPSPPR
Subjt:  YPHYRSQFGDTTFTKVFVGGLAWETPTDQMQTYFEQFGDILEAVIITDKNTSKSKGYGFVTFRDPESARRACANPNPIIDGRRANCNIAALGRPRPSPPR

Query:  GCSFTLIIYIFVMNIVGLVLLFLIKIVLYLGRGQSSVNPYQGSTMQAQATPSYGGVPSPLNQPPIPPPPPPAPPVVYSPYGYPAYSPDYGYTTTIKQCTI
        G                              RGQ  VNPYQGSTMQA   PSY GVP PLNQPP+PPPPPP   VVYSPYGYP Y+PDYGY         
Subjt:  GCSFTLIIYIFVMNIVGLVLLFLIKIVLYLGRGQSSVNPYQGSTMQAQATPSYGGVPSPLNQPPIPPPPPPAPPVVYSPYGYPAYSPDYGYTTTIKQCTI

Query:  HKFNSHKCINKLHIIMVIHQEEQHSQILHNHINILDYYYLL-------------HMSTTLPPP----PPP-------QFEPSSFNYPPQPQPQIIRHRFS
                          HQ  QH Q      N   Y Y L             H      PP    PPP       QFE  SF+YPP     +IRHRF+
Subjt:  HKFNSHKCINKLHIIMVIHQEEQHSQILHNHINILDYYYLL-------------HMSTTLPPP----PPP-------QFEPSSFNYPPQPQPQIIRHRFS

Query:  STDSQTSQQTPTEAEAGGVTSD
        STDSQTSQQTP EAEA  VTS+
Subjt:  STDSQTSQQTPTEAEAGGVTSD

XP_004136431.1 RNA-binding protein 38 [Cucumis sativus]2.09e-13971.92Show/hide
Query:  MANYPHYRSQFGDTTFTKVFVGGLAWETPTDQMQTYFEQFGDILEAVIITDKNTSKSKGYGFVTFRDPESARRACANPNPIIDGRRANCNIAALGRPRPS
        MANYPHYRSQFGDTTFTKVFVGGLAWETPTDQMQTYFEQFGDILEAVIITDKNTSKSKGYGFVTFRDPESARRACANPNPIIDGRRANCNIAALGRPRPS
Subjt:  MANYPHYRSQFGDTTFTKVFVGGLAWETPTDQMQTYFEQFGDILEAVIITDKNTSKSKGYGFVTFRDPESARRACANPNPIIDGRRANCNIAALGRPRPS

Query:  PPRGCSFTLIIYIFVMNIVGLVLLFLIKIVLYLGRGQSSVNPYQGSTMQAQATPSYGGVPSPLNQPPIPPPPPPAPPVVYSPYGYPAYSPDYGY------
        PPRG                              RGQSSVNPYQGSTMQAQATPSYGGVPSPLNQPPIPPPPPPAPPVVYSPYGYPAYSPDYGY      
Subjt:  PPRGCSFTLIIYIFVMNIVGLVLLFLIKIVLYLGRGQSSVNPYQGSTMQAQATPSYGGVPSPLNQPPIPPPPPPAPPVVYSPYGYPAYSPDYGY------

Query:  --TTTIKQCTIHKFNSHKC--INKLHIIMVIHQEEQHSQILHNHINILDYYYLLHMSTTLPPPPPPQFEPSSFNYPPQPQPQIIRHRFSSTDSQTSQQTP
             ++Q  +++   +     ++        Q  QH ++L      L   Y+ +     PPPPPPQFEPSSFNYPPQPQPQIIRHRFSSTDSQTSQQTP
Subjt:  --TTTIKQCTIHKFNSHKC--INKLHIIMVIHQEEQHSQILHNHINILDYYYLLHMSTTLPPPPPPQFEPSSFNYPPQPQPQIIRHRFSSTDSQTSQQTP

Query:  TEAEAGGVTSDIQSPTS
        TEAEAGGVTSDIQSPTS
Subjt:  TEAEAGGVTSDIQSPTS

XP_022152706.1 RNA-binding protein 38 [Momordica charantia]4.03e-10160.06Show/hide
Query:  YPHYRSQFGDTTFTKVFVGGLAWETPTDQMQTYFEQFGDILEAVIITDKNTSKSKGYGFVTFRDPESARRACANPNPIIDGRRANCNIAALGRPRPSPPR
        Y HYRSQFGDTTFTKVFVGGLAWETPT++M+ YFEQFG+ILEAVIITDKNT+KSKGYGFVTFRDPESARRACANPNP+IDGRRANCNIAALGRPRPSPPR
Subjt:  YPHYRSQFGDTTFTKVFVGGLAWETPTDQMQTYFEQFGDILEAVIITDKNTSKSKGYGFVTFRDPESARRACANPNPIIDGRRANCNIAALGRPRPSPPR

Query:  GCSFTLIIYIFVMNIVGLVLLFLIKIVLYLGRGQSSVNPYQGSTMQAQATPSYGGVPSPLNQPPIPPPPPPAPPVVYSPYGYPAYSPDYGY-TTTIKQCT
        G                              R Q  +NPYQGSTMQA  TPSY GVP+PLNQPP+PP PPP PPVVYSPYGYP+YSPDYGY    +    
Subjt:  GCSFTLIIYIFVMNIVGLVLLFLIKIVLYLGRGQSSVNPYQGSTMQAQATPSYGGVPSPLNQPPIPPPPPPAPPVVYSPYGYPAYSPDYGY-TTTIKQCT

Query:  IHKFNSHKCINKLHIIMVIHQEEQHSQIL-HNHINILDYYYLLHMSTTLPPPPPPQFEPSSF--NYPPQPQPQIIRHRFSSTDSQTSQQTPTEAEA----
        + +   +     L+   V       S     +H + +   YL + +    P P  QFEPSS   NYPP P   ++RHRFSSTDSQTSQQTPTEAEA    
Subjt:  IHKFNSHKCINKLHIIMVIHQEEQHSQIL-HNHINILDYYYLLHMSTTLPPPPPPQFEPSSF--NYPPQPQPQIIRHRFSSTDSQTSQQTPTEAEA----

Query:  --GGVTSD
          G VTS+
Subjt:  --GGVTSD

XP_022975652.1 RNA-binding protein 38-like [Cucurbita maxima]1.99e-9958.62Show/hide
Query:  YPHYRSQFGDTTFTKVFVGGLAWETPTDQMQTYFEQFGDILEAVIITDKNTSKSKGYGFVTFRDPESARRACANPNPIIDGRRANCNIAALGRPRPSPPR
        YPHYRSQFGDTT TKVFVGGLAWETPTD+M+ YFEQFGDILEAVIITDKNTSKSKGYGFVTFRD ESARRACANPNP+IDGRRANCNIAA+GRPRPSPPR
Subjt:  YPHYRSQFGDTTFTKVFVGGLAWETPTDQMQTYFEQFGDILEAVIITDKNTSKSKGYGFVTFRDPESARRACANPNPIIDGRRANCNIAALGRPRPSPPR

Query:  GCSFTLIIYIFVMNIVGLVLLFLIKIVLYLGRGQSSVNPYQGSTMQAQATPSYGGVPSPLNQPPIPPPPPPAPPVVYSPYGYPAYSPDYGYTTTIKQCTI
        G                              RGQ  VNPYQGSTMQA   PSY GVP PLNQPP+PPPPP    VVYSPYGYP Y+PDYGY         
Subjt:  GCSFTLIIYIFVMNIVGLVLLFLIKIVLYLGRGQSSVNPYQGSTMQAQATPSYGGVPSPLNQPPIPPPPPPAPPVVYSPYGYPAYSPDYGYTTTIKQCTI

Query:  HKFNSHKCINKLHIIMVIHQEEQHSQILHNHINILDYYYLL-------------HMSTTLPPP----PPP----QFEPSSFNYPPQPQPQIIRHRFSSTD
                          HQ  QH Q      N   Y Y +             H      PP    PPP    Q+E  SF+YPP P P +IRHRF+STD
Subjt:  HKFNSHKCINKLHIIMVIHQEEQHSQILHNHINILDYYYLL-------------HMSTTLPPP----PPP----QFEPSSFNYPPQPQPQIIRHRFSSTD

Query:  SQTSQQTPTEAEAGGVTSD
        SQTSQQTPTEAEA  VTS+
Subjt:  SQTSQQTPTEAEAGGVTSD

XP_038897135.1 RNA-binding protein 38 [Benincasa hispida]2.89e-11564.15Show/hide
Query:  YPHYRSQFGDTTFTKVFVGGLAWETPTDQMQTYFEQFGDILEAVIITDKNTSKSKGYGFVTFRDPESARRACANPNPIIDGRRANCNIAALGRPRPSPPR
        YPHYRSQFGDTTFTKVFVGGLAWETPTD M+TYFEQFGDILEAVIITDKNTSKSKGYGFVTFRD ESARRACAN NPIIDGRRANCNIAALGRPRPSPPR
Subjt:  YPHYRSQFGDTTFTKVFVGGLAWETPTDQMQTYFEQFGDILEAVIITDKNTSKSKGYGFVTFRDPESARRACANPNPIIDGRRANCNIAALGRPRPSPPR

Query:  GCSFTLIIYIFVMNIVGLVLLFLIKIVLYLGRGQSSVNPYQGSTMQAQATPSYGGVPSPLNQPPIPPPPPPAPPVVYSPYGYPAYSPDYGY-------TT
        G                              RGQSSVNPYQGSTMQ QATPSYGGVPSPLNQPP+PPPPPP PP+VYSPYGYPAYSPDYGY         
Subjt:  GCSFTLIIYIFVMNIVGLVLLFLIKIVLYLGRGQSSVNPYQGSTMQAQATPSYGGVPSPLNQPPIPPPPPPAPPVVYSPYGYPAYSPDYGY-------TT

Query:  TIKQCTIHKFNSHKCINKLHIIMVIHQEEQHSQILHNHINILDYYYLLHMSTTLPPPPPP-------QFEPSSFNYPPQPQPQIIRHRFSSTDSQTSQQT
         ++Q  I++ + +     L            S   H+   +L   Y+ +      PPP P       QFE +S NYPP     +IRHRFSSTDSQTSQQT
Subjt:  TIKQCTIHKFNSHKCINKLHIIMVIHQEEQHSQILHNHINILDYYYLLHMSTTLPPPPPP-------QFEPSSFNYPPQPQPQIIRHRFSSTDSQTSQQT

Query:  PTEAEAGGVTSDIQSPTS
        PTE EAGGVTSD QSPTS
Subjt:  PTEAEAGGVTSDIQSPTS

TrEMBL top hitse value%identityAlignment
A0A0A0LGV2 RRM domain-containing protein1.01e-13971.92Show/hide
Query:  MANYPHYRSQFGDTTFTKVFVGGLAWETPTDQMQTYFEQFGDILEAVIITDKNTSKSKGYGFVTFRDPESARRACANPNPIIDGRRANCNIAALGRPRPS
        MANYPHYRSQFGDTTFTKVFVGGLAWETPTDQMQTYFEQFGDILEAVIITDKNTSKSKGYGFVTFRDPESARRACANPNPIIDGRRANCNIAALGRPRPS
Subjt:  MANYPHYRSQFGDTTFTKVFVGGLAWETPTDQMQTYFEQFGDILEAVIITDKNTSKSKGYGFVTFRDPESARRACANPNPIIDGRRANCNIAALGRPRPS

Query:  PPRGCSFTLIIYIFVMNIVGLVLLFLIKIVLYLGRGQSSVNPYQGSTMQAQATPSYGGVPSPLNQPPIPPPPPPAPPVVYSPYGYPAYSPDYGY------
        PPRG                              RGQSSVNPYQGSTMQAQATPSYGGVPSPLNQPPIPPPPPPAPPVVYSPYGYPAYSPDYGY      
Subjt:  PPRGCSFTLIIYIFVMNIVGLVLLFLIKIVLYLGRGQSSVNPYQGSTMQAQATPSYGGVPSPLNQPPIPPPPPPAPPVVYSPYGYPAYSPDYGY------

Query:  --TTTIKQCTIHKFNSHKC--INKLHIIMVIHQEEQHSQILHNHINILDYYYLLHMSTTLPPPPPPQFEPSSFNYPPQPQPQIIRHRFSSTDSQTSQQTP
             ++Q  +++   +     ++        Q  QH ++L      L   Y+ +     PPPPPPQFEPSSFNYPPQPQPQIIRHRFSSTDSQTSQQTP
Subjt:  --TTTIKQCTIHKFNSHKC--INKLHIIMVIHQEEQHSQILHNHINILDYYYLLHMSTTLPPPPPPQFEPSSFNYPPQPQPQIIRHRFSSTDSQTSQQTP

Query:  TEAEAGGVTSDIQSPTS
        TEAEAGGVTSDIQSPTS
Subjt:  TEAEAGGVTSDIQSPTS

A0A5D3E5S6 RNA-binding protein 38-like1.55e-8273.37Show/hide
Query:  MANYPHYRSQFGDTTFTKVFVGGLAWETPTDQMQTYFEQFGDILEAVIITDKNTSKSKGYGFVTFRDPESARRACANPNPIIDGRRANCNIAALGRPRPS
        MANYPHYRSQFGDTTFTKVFVGGLAWETPTDQM+TYFEQFGDILEAV                TFRDPESARRACANPNPIIDGRRANCNIAALGRPRPS
Subjt:  MANYPHYRSQFGDTTFTKVFVGGLAWETPTDQMQTYFEQFGDILEAVIITDKNTSKSKGYGFVTFRDPESARRACANPNPIIDGRRANCNIAALGRPRPS

Query:  PPRGCSFTLIIYIFVMNIVGLVLLFLIKIVLYLGRGQSSVNPYQGSTMQAQATPSYGGVPSPLNQPPIPPPPPPAPPVVYSPYG
        PPRG                              RGQSSVNPYQG+TMQAQA+PSYGGVPSPLNQPPIPPPPPPAPPVVYSPYG
Subjt:  PPRGCSFTLIIYIFVMNIVGLVLLFLIKIVLYLGRGQSSVNPYQGSTMQAQATPSYGGVPSPLNQPPIPPPPPPAPPVVYSPYG

A0A6J1DIJ5 RNA-binding protein 381.95e-10160.06Show/hide
Query:  YPHYRSQFGDTTFTKVFVGGLAWETPTDQMQTYFEQFGDILEAVIITDKNTSKSKGYGFVTFRDPESARRACANPNPIIDGRRANCNIAALGRPRPSPPR
        Y HYRSQFGDTTFTKVFVGGLAWETPT++M+ YFEQFG+ILEAVIITDKNT+KSKGYGFVTFRDPESARRACANPNP+IDGRRANCNIAALGRPRPSPPR
Subjt:  YPHYRSQFGDTTFTKVFVGGLAWETPTDQMQTYFEQFGDILEAVIITDKNTSKSKGYGFVTFRDPESARRACANPNPIIDGRRANCNIAALGRPRPSPPR

Query:  GCSFTLIIYIFVMNIVGLVLLFLIKIVLYLGRGQSSVNPYQGSTMQAQATPSYGGVPSPLNQPPIPPPPPPAPPVVYSPYGYPAYSPDYGY-TTTIKQCT
        G                              R Q  +NPYQGSTMQA  TPSY GVP+PLNQPP+PP PPP PPVVYSPYGYP+YSPDYGY    +    
Subjt:  GCSFTLIIYIFVMNIVGLVLLFLIKIVLYLGRGQSSVNPYQGSTMQAQATPSYGGVPSPLNQPPIPPPPPPAPPVVYSPYGYPAYSPDYGY-TTTIKQCT

Query:  IHKFNSHKCINKLHIIMVIHQEEQHSQIL-HNHINILDYYYLLHMSTTLPPPPPPQFEPSSF--NYPPQPQPQIIRHRFSSTDSQTSQQTPTEAEA----
        + +   +     L+   V       S     +H + +   YL + +    P P  QFEPSS   NYPP P   ++RHRFSSTDSQTSQQTPTEAEA    
Subjt:  IHKFNSHKCINKLHIIMVIHQEEQHSQIL-HNHINILDYYYLLHMSTTLPPPPPPQFEPSSF--NYPPQPQPQIIRHRFSSTDSQTSQQTPTEAEA----

Query:  --GGVTSD
          G VTS+
Subjt:  --GGVTSD

A0A6J1F8X9 RNA-binding protein 38-like8.66e-9958.39Show/hide
Query:  YPHYRSQFGDTTFTKVFVGGLAWETPTDQMQTYFEQFGDILEAVIITDKNTSKSKGYGFVTFRDPESARRACANPNPIIDGRRANCNIAALGRPRPSPPR
        YPHYRSQFGDTTFTKVFVGGLAWETPTD+M+ YFEQFGDILEAVIITDKNTSKSKGYGFVTFRD ESARRACANPNP+IDGRRANCNIAA+GRPRPSPPR
Subjt:  YPHYRSQFGDTTFTKVFVGGLAWETPTDQMQTYFEQFGDILEAVIITDKNTSKSKGYGFVTFRDPESARRACANPNPIIDGRRANCNIAALGRPRPSPPR

Query:  GCSFTLIIYIFVMNIVGLVLLFLIKIVLYLGRGQSSVNPYQGSTMQAQATPSYGGVPSPLNQPPIPPPPPPAPPVVYSPYGYPAYSPDYGYTTTIKQCTI
        G                              RGQ  VNPYQGSTMQA   PSY GVP PLNQPP+PPPPPP   VVYSPYGYP Y+ DYGY         
Subjt:  GCSFTLIIYIFVMNIVGLVLLFLIKIVLYLGRGQSSVNPYQGSTMQAQATPSYGGVPSPLNQPPIPPPPPPAPPVVYSPYGYPAYSPDYGYTTTIKQCTI

Query:  HKFNSHKCINKLHIIMVIHQEEQHSQILHNHINILDYYYLL-------------HMSTTLPPP----PPP-------QFEPSSFNYPPQPQPQIIRHRFS
                          HQ  QH Q      N   Y Y L             H      PP    PPP       QFE  SF+YPP P   +IRHRF+
Subjt:  HKFNSHKCINKLHIIMVIHQEEQHSQILHNHINILDYYYLL-------------HMSTTLPPP----PPP-------QFEPSSFNYPPQPQPQIIRHRFS

Query:  STDSQTSQQTPTEAEAGGVTSD
        STDSQTSQQTP EAEA  VTS+
Subjt:  STDSQTSQQTPTEAEAGGVTSD

A0A6J1IJV9 RNA-binding protein 38-like9.62e-10058.62Show/hide
Query:  YPHYRSQFGDTTFTKVFVGGLAWETPTDQMQTYFEQFGDILEAVIITDKNTSKSKGYGFVTFRDPESARRACANPNPIIDGRRANCNIAALGRPRPSPPR
        YPHYRSQFGDTT TKVFVGGLAWETPTD+M+ YFEQFGDILEAVIITDKNTSKSKGYGFVTFRD ESARRACANPNP+IDGRRANCNIAA+GRPRPSPPR
Subjt:  YPHYRSQFGDTTFTKVFVGGLAWETPTDQMQTYFEQFGDILEAVIITDKNTSKSKGYGFVTFRDPESARRACANPNPIIDGRRANCNIAALGRPRPSPPR

Query:  GCSFTLIIYIFVMNIVGLVLLFLIKIVLYLGRGQSSVNPYQGSTMQAQATPSYGGVPSPLNQPPIPPPPPPAPPVVYSPYGYPAYSPDYGYTTTIKQCTI
        G                              RGQ  VNPYQGSTMQA   PSY GVP PLNQPP+PPPPP    VVYSPYGYP Y+PDYGY         
Subjt:  GCSFTLIIYIFVMNIVGLVLLFLIKIVLYLGRGQSSVNPYQGSTMQAQATPSYGGVPSPLNQPPIPPPPPPAPPVVYSPYGYPAYSPDYGYTTTIKQCTI

Query:  HKFNSHKCINKLHIIMVIHQEEQHSQILHNHINILDYYYLL-------------HMSTTLPPP----PPP----QFEPSSFNYPPQPQPQIIRHRFSSTD
                          HQ  QH Q      N   Y Y +             H      PP    PPP    Q+E  SF+YPP P P +IRHRF+STD
Subjt:  HKFNSHKCINKLHIIMVIHQEEQHSQILHNHINILDYYYLL-------------HMSTTLPPP----PPP----QFEPSSFNYPPQPQPQIIRHRFSSTD

Query:  SQTSQQTPTEAEAGGVTSD
        SQTSQQTPTEAEA  VTS+
Subjt:  SQTSQQTPTEAEAGGVTSD

SwissProt top hitse value%identityAlignment
D3Z4I3 RNA-binding protein 241.3e-2460.44Show/hide
Query:  DTTFTKVFVGGLAWETPTDQMQTYFEQFGDILEAVIITDKNTSKSKGYGFVTFRDPESARRACANPNPIIDGRRANCNIAALG-RPRPSPP
        DTT+TK+FVGGL + T    ++ YFE FGDI EAV+ITD+ T KS+GYGFVT  D  +A RAC +PNPIIDGR+AN N+A LG +PR   P
Subjt:  DTTFTKVFVGGLAWETPTDQMQTYFEQFGDILEAVIITDKNTSKSKGYGFVTFRDPESARRACANPNPIIDGRRANCNIAALG-RPRPSPP

Q5ZMA3 RNA-binding protein 247.9e-2560.44Show/hide
Query:  DTTFTKVFVGGLAWETPTDQMQTYFEQFGDILEAVIITDKNTSKSKGYGFVTFRDPESARRACANPNPIIDGRRANCNIAALG-RPRPSPP
        DTT+TK+FVGGL + T    ++ YFE FGDI EAV+ITD+ T KS+GYGFVT  D  +A RAC +PNPIIDGR+AN N+A LG +PR   P
Subjt:  DTTFTKVFVGGLAWETPTDQMQTYFEQFGDILEAVIITDKNTSKSKGYGFVTFRDPESARRACANPNPIIDGRRANCNIAALG-RPRPSPP

Q6P8A7 RNA-binding protein 247.9e-2560.44Show/hide
Query:  DTTFTKVFVGGLAWETPTDQMQTYFEQFGDILEAVIITDKNTSKSKGYGFVTFRDPESARRACANPNPIIDGRRANCNIAALG-RPRPSPP
        DTT+TK+FVGGL + T    ++ YFE FGDI EAV+ITD+ T KS+GYGFVT  D  +A RAC +PNPIIDGR+AN N+A LG +PR   P
Subjt:  DTTFTKVFVGGLAWETPTDQMQTYFEQFGDILEAVIITDKNTSKSKGYGFVTFRDPESARRACANPNPIIDGRRANCNIAALG-RPRPSPP

Q9I8B3 RNA-binding protein 24-B7.9e-2560.44Show/hide
Query:  DTTFTKVFVGGLAWETPTDQMQTYFEQFGDILEAVIITDKNTSKSKGYGFVTFRDPESARRACANPNPIIDGRRANCNIAALG-RPRPSPP
        DTT+TK+FVGGL + T    ++ YFE FGDI EAV+ITD+ T KS+GYGFVT  D  +A RAC +PNPIIDGR+AN N+A LG +PR   P
Subjt:  DTTFTKVFVGGLAWETPTDQMQTYFEQFGDILEAVIITDKNTSKSKGYGFVTFRDPESARRACANPNPIIDGRRANCNIAALG-RPRPSPP

Q9M1S3 Probable RNA-binding protein ARP14.9e-2765.22Show/hide
Query:  FGDTTFTKVFVGGLAWETPTDQMQTYFEQFGDILEAVIITDKNTSKSKGYGFVTFRDPESARRACANPNPIIDGRRANCNIAAL-GRPRPSP
        FGDT  TKVFVGGLAW+T  + M  +F ++GDILEAVII+DK T +SKGYGFVTF+D ++A RAC +  PII+GRRANCN+A+L GR R SP
Subjt:  FGDTTFTKVFVGGLAWETPTDQMQTYFEQFGDILEAVIITDKNTSKSKGYGFVTFRDPESARRACANPNPIIDGRRANCNIAAL-GRPRPSP

Arabidopsis top hitse value%identityAlignment
AT1G20880.1 RNA-binding (RRM/RBD/RNP motifs) family protein2.1e-3648.45Show/hide
Query:  ANYPHYRSQFGDTTFTKVFVGGLAWETPTDQMQTYFEQFGDILEAVIITDKNTSKSKGYGFVTFRDPESARRACANPNPIIDGRRANCNIAALGRPRPSP
        + + +  S FGDTTFTKVFVGGLAWET ++ ++ +F+Q+GDILEAV+ITDKNT +SKGYGFVTFRDPE+ARRAC +P PIIDGRRANCN+A+LGR RP  
Subjt:  ANYPHYRSQFGDTTFTKVFVGGLAWETPTDQMQTYFEQFGDILEAVIITDKNTSKSKGYGFVTFRDPESARRACANPNPIIDGRRANCNIAALGRPRPSP

Query:  PRGCSFTLIIYIFVMNIVGLVLLFLIKIVLYLGRGQSSVNPYQGSTMQAQATPSYGGVPSPLNQPPIPPPPPPAPPVVYSPYGYPAYSPDYGYT
                + Y  + +  G V                  +PY GS +Q+     +G    P +Q   PP       VVY PYG   Y PDY Y+
Subjt:  PRGCSFTLIIYIFVMNIVGLVLLFLIKIVLYLGRGQSSVNPYQGSTMQAQATPSYGGVPSPLNQPPIPPPPPPAPPVVYSPYGYPAYSPDYGYT

AT1G22330.1 RNA-binding (RRM/RBD/RNP motifs) family protein3.1e-4039.48Show/hide
Query:  MANYPHYRSQFGDTTFTKVFVGGLAWETPTDQMQTYFEQFGDILEAVIITDKNTSKSKGYGFVTFRDPESARRACANPNPIIDGRRANCNIAALGRPRPS
        M+N  +YRS FGDTT TKVFVGGLAWETPTD+M+ YF+QFG+ILEAVIITDK T KSKGYGFVTFRD +SA RA A+PNP+IDGR+ANCNIA+ GRPRPS
Subjt:  MANYPHYRSQFGDTTFTKVFVGGLAWETPTDQMQTYFEQFGDILEAVIITDKNTSKSKGYGFVTFRDPESARRACANPNPIIDGRRANCNIAALGRPRPS

Query:  PPRGCSFTLIIYIFVMNIVGLVLLFLIKIVLYLGRGQ-SSVNPYQGSTMQAQATPSYGGVPSPLNQPPIPPPPPPAPPVVYSPYGYPAYSPDYGYTTTIK
         PR                              GRGQ  S + YQG         SY G+ +P+ Q         A  ++Y  YGY  Y+ +YGY   + 
Subjt:  PPRGCSFTLIIYIFVMNIVGLVLLFLIKIVLYLGRGQ-SSVNPYQGSTMQAQATPSYGGVPSPLNQPPIPPPPPPAPPVVYSPYGYPAYSPDYGYTTTIK

Query:  QCTIHKFNSHKCINKLHIIMVIHQEEQHSQILHNHINILDYYYLLHMSTTLPPPPPPQFEPSSFNY-PPQPQPQIIRHRFSSTDSQTSQQTPTEAEAGGV
           + +   ++          ++     +    ++I    YYYL       P P P       + Y   Q Q Q  + R  S  S     +  EA     
Subjt:  QCTIHKFNSHKCINKLHIIMVIHQEEQHSQILHNHINILDYYYLLHMSTTLPPPPPPQFEPSSFNY-PPQPQPQIIRHRFSSTDSQTSQQTPTEAEAGGV

Query:  TSDIQSPTS
            Q P S
Subjt:  TSDIQSPTS

AT1G76460.1 RNA-binding (RRM/RBD/RNP motifs) family protein2.9e-3848.97Show/hide
Query:  ANYPHYRSQFGDTTFTKVFVGGLAWETPTDQMQTYFEQFGDILEAVIITDKNTSKSKGYGFVTFRDPESARRACANPNPIIDGRRANCNIAALGRPRPSP
        + + +  S FGDTTFTKVFVGGLAWET ++ ++ +FEQ+G+ILEAV+I DKNT +SKGYGFVTFRDPE+ARRACA+P PIIDGRRANCN+A+LGRPRP  
Subjt:  ANYPHYRSQFGDTTFTKVFVGGLAWETPTDQMQTYFEQFGDILEAVIITDKNTSKSKGYGFVTFRDPESARRACANPNPIIDGRRANCNIAALGRPRPSP

Query:  PRGCSFTLIIYIFVMNIVGLVLLFLIKIVLYLGRGQSSVNPYQGSTMQAQATPSYGGVPSPLNQPPIPPPPPPAPPVVYSPYGYPAYSPDYGYT
        P         Y  + N+ G +                  +PY G+ +Q       G  P    Q P+P        VVY PYG  AY P+Y Y+
Subjt:  PRGCSFTLIIYIFVMNIVGLVLLFLIKIVLYLGRGQSSVNPYQGSTMQAQATPSYGGVPSPLNQPPIPPPPPPAPPVVYSPYGYPAYSPDYGYT

AT1G78260.1 RNA-binding (RRM/RBD/RNP motifs) family protein9.5e-4240.18Show/hide
Query:  MANYPHYRSQFGDTTFTKVFVGGLAWETPTDQMQTYFEQFGDILEAVIITDKNTSKSKGYGFVTFRDPESARRACANPNPIIDGRRANCNIAALGRPRPS
        M+   +YRS FGDTT+TKVFVGGLAWETPTD+M+ YFEQFG+ILEAVIITDKNT KSKGYGFVTFR+ +SA RA A+PNP+IDGR+ANCNIA+ GRPRPS
Subjt:  MANYPHYRSQFGDTTFTKVFVGGLAWETPTDQMQTYFEQFGDILEAVIITDKNTSKSKGYGFVTFRDPESARRACANPNPIIDGRRANCNIAALGRPRPS

Query:  PPRGCSFTLIIYIFVMNIVGLVLLFLIKIVLYLGRGQSSVNPYQGSTMQAQATPSYGGVPSPLNQPPIPPPPPPAPPVVYSPYGYPAYSPD-YGYTTTIK
        PPR                              GRGQ+      GS  Q Q+     G PS       P PP  AP ++Y  YGY  Y+PD +GY   + 
Subjt:  PPRGCSFTLIIYIFVMNIVGLVLLFLIKIVLYLGRGQSSVNPYQGSTMQAQATPSYGGVPSPLNQPPIPPPPPPAPPVVYSPYGYPAYSPD-YGYTTTIK

Query:  QCTIHKFNSHKCINKLHIIMVIHQEEQHSQILHNHINILDYYYLLHMSTT---------LPPPPPPQ-------FEPSSFNYPPQPQ--PQIIRHRFSST
           + +   ++   +L+           + I+ +      YYY   +            LP P  PQ         PS   YP      P +     SST
Subjt:  QCTIHKFNSHKCINKLHIIMVIHQEEQHSQILHNHINILDYYYLLHMSTT---------LPPPPPPQ-------FEPSSFNYPPQPQ--PQIIRHRFSST

Query:  DSQTSQQTPTEAEAGGVTSDIQSPTS
        +S+   Q    AE    T+  +  TS
Subjt:  DSQTSQQTPTEAEAGGVTSDIQSPTS

AT1G78260.2 RNA-binding (RRM/RBD/RNP motifs) family protein1.1e-4554.36Show/hide
Query:  MANYPHYRSQFGDTTFTKVFVGGLAWETPTDQMQTYFEQFGDILEAVIITDKNTSKSKGYGFVTFRDPESARRACANPNPIIDGRRANCNIAALGRPRPS
        M+   +YRS FGDTT+TKVFVGGLAWETPTD+M+ YFEQFG+ILEAVIITDKNT KSKGYGFVTFR+ +SA RA A+PNP+IDGR+ANCNIA+ GRPRPS
Subjt:  MANYPHYRSQFGDTTFTKVFVGGLAWETPTDQMQTYFEQFGDILEAVIITDKNTSKSKGYGFVTFRDPESARRACANPNPIIDGRRANCNIAALGRPRPS

Query:  PPRGCSFTLIIYIFVMNIVGLVLLFLIKIVLYLGRGQSSVNPYQGSTMQAQATPSYGGVPSPLNQPPIPPPPPPAPPVVYSPYGYPAYSPD-YGY
        PPR                              GRGQ+      GS  Q Q+     G PS       P PP  AP ++Y  YGY  Y+PD +GY
Subjt:  PPRGCSFTLIIYIFVMNIVGLVLLFLIKIVLYLGRGQSSVNPYQGSTMQAQATPSYGGVPSPLNQPPIPPPPPPAPPVVYSPYGYPAYSPD-YGY


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTAATTATCCACATTACCGATCTCAATTTGGAGATACAACTTTCACTAAAGTCTTTGTTGGTGGTCTTGCTTGGGAAACTCCCACTGACCAAATGCAAACTTATTT
TGAACAATTTGGTGACATTCTTGAAGCTGTTATTATCACTGATAAAAACACCTCCAAATCTAAAGGATATGGATTCGTCACATTTCGTGACCCTGAATCTGCAAGAAGAG
CTTGTGCCAATCCTAACCCAATAATCGATGGAAGACGTGCAAATTGTAACATTGCTGCATTGGGTCGACCTCGGCCTTCCCCTCCACGAGGTTGCTCATTTACTTTAATT
ATTTACATATTTGTTATGAATATTGTTGGTTTGGTTTTGCTTTTCTTAATAAAAATTGTTTTGTATTTAGGACGAGGGCAAAGTAGTGTAAATCCATATCAAGGAAGTAC
AATGCAGGCACAAGCAACACCATCCTATGGTGGAGTCCCGTCCCCGTTAAACCAGCCACCCATTCCTCCGCCGCCTCCGCCTGCACCCCCCGTCGTATATTCACCATACG
GATACCCAGCTTACAGTCCAGATTATGGGTACACCACCACCATCAAGCAGTGTACAATCCACAAGTTCAACAGCCACAAATGTATCAACAAACTCCATATTATTATGGTT
ATTCATCAAGAGGAACAACATTCCCAAATCCTTCACAATCACATCAACATCCTCGATTATTACTACCTCCTTCATATGTCTACTACCCTCCCCCCTCCCCCTCCTCCTCA
ATTTGAACCTTCTTCCTTCAATTATCCCCCTCAACCTCAACCACAGATAATTCGACACCGTTTTTCCTCAACAGATTCACAGACATCACAACAAACTCCAACAGAAGCTG
AAGCTGGAGGTGTTACTTCTGATATTCAAAGTCCAACCTCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCTAATTATCCACATTACCGATCTCAATTTGGAGATACAACTTTCACTAAAGTCTTTGTTGGTGGTCTTGCTTGGGAAACTCCCACTGACCAAATGCAAACTTATTT
TGAACAATTTGGTGACATTCTTGAAGCTGTTATTATCACTGATAAAAACACCTCCAAATCTAAAGGATATGGATTCGTCACATTTCGTGACCCTGAATCTGCAAGAAGAG
CTTGTGCCAATCCTAACCCAATAATCGATGGAAGACGTGCAAATTGTAACATTGCTGCATTGGGTCGACCTCGGCCTTCCCCTCCACGAGGTTGCTCATTTACTTTAATT
ATTTACATATTTGTTATGAATATTGTTGGTTTGGTTTTGCTTTTCTTAATAAAAATTGTTTTGTATTTAGGACGAGGGCAAAGTAGTGTAAATCCATATCAAGGAAGTAC
AATGCAGGCACAAGCAACACCATCCTATGGTGGAGTCCCGTCCCCGTTAAACCAGCCACCCATTCCTCCGCCGCCTCCGCCTGCACCCCCCGTCGTATATTCACCATACG
GATACCCAGCTTACAGTCCAGATTATGGGTACACCACCACCATCAAGCAGTGTACAATCCACAAGTTCAACAGCCACAAATGTATCAACAAACTCCATATTATTATGGTT
ATTCATCAAGAGGAACAACATTCCCAAATCCTTCACAATCACATCAACATCCTCGATTATTACTACCTCCTTCATATGTCTACTACCCTCCCCCCTCCCCCTCCTCCTCA
ATTTGAACCTTCTTCCTTCAATTATCCCCCTCAACCTCAACCACAGATAATTCGACACCGTTTTTCCTCAACAGATTCACAGACATCACAACAAACTCCAACAGAAGCTG
AAGCTGGAGGTGTTACTTCTGATATTCAAAGTCCAACCTCTTGA
Protein sequenceShow/hide protein sequence
MANYPHYRSQFGDTTFTKVFVGGLAWETPTDQMQTYFEQFGDILEAVIITDKNTSKSKGYGFVTFRDPESARRACANPNPIIDGRRANCNIAALGRPRPSPPRGCSFTLI
IYIFVMNIVGLVLLFLIKIVLYLGRGQSSVNPYQGSTMQAQATPSYGGVPSPLNQPPIPPPPPPAPPVVYSPYGYPAYSPDYGYTTTIKQCTIHKFNSHKCINKLHIIMV
IHQEEQHSQILHNHINILDYYYLLHMSTTLPPPPPPQFEPSSFNYPPQPQPQIIRHRFSSTDSQTSQQTPTEAEAGGVTSDIQSPTS