CuGenDBv2

Gene ID	Cucsat.G13722
Organism	Cucumis sativus L. var. sativus cv. B10 (Cucumber (B10) v3)
Description	Beta-galactosidase
Genome location	ctg184:1584249..1599636
RNA-Seq Expression	Cucsat.G13722
Synteny	Cucsat.G13722
Gene Ontology terms	GO:0015074 - DNA integration (biological process) GO:0003676 - nucleic acid binding (molecular function)
InterPro domains	IPR029472 - Retrotransposon Copia-like, N-terminal

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0056745.1 Beta-galactosidase [Cucumis melo var. makuwa]

4.23e-163

71.59

Show/hide

Query:  RQQIAALEATLGTTST-LPMYSENPVNSFSNVSSPYLTNTVAQSSMYHLSGEKLNGNNYFSWSQSVKMVLEGRQKFSFLTGEIPRPQPGDPHERYWKAED
        R  I A E++  +  T LPMYS+NPV SFSN  S Y+T ++  SS  + SGEKLNG NYFSWSQS+KM LEGR +F FLTGE  RP PGD  ER WK ED
Subjt:  RQQIAALEATLGTTST-LPMYSENPVNSFSNVSSPYLTNTVAQSSMYHLSGEKLNGNNYFSWSQSVKMVLEGRQKFSFLTGEIPRPQPGDPHERYWKAED

Query:  SILRSILINSMEPQIGKPLLFAATAKDIWDTAQTLYSKRQNASRLYTLRKQVHECKQGTMDVTSFFNKLSLIWQEMDLCRELVWRDPTDGVQYSRIEEND
        S++RS+LINSMEPQIGKPLL+AATAKD+WDT QTLYSKRQNASRLYTLRKQVH CKQGT+DVT++FNKLSL+WQEMDLCRE VW  P D  QY+++EE D
Subjt:  SILRSILINSMEPQIGKPLLFAATAKDIWDTAQTLYSKRQNASRLYTLRKQVHECKQGTMDVTSFFNKLSLIWQEMDLCRELVWRDPTDGVQYSRIEEND

Query:  RIYDFLAGLNPKFDVVRGRILGQRPIPSLMEVCSEIRLEEDRTSAMNISATPTIDSAAFSARSSNSSSDKHNGKPIPVCEHCKKQWHTKEQCWKLHGRPP
        R+YDFLAGLNPKFD V GRILGQRP+PSLMEVC E+RLEEDRT+AM +  TPTIDSAAFSARSSN  SDK+NGK IPVCEHCKKQWHTK+QCWKLHGRPP
Subjt:  RIYDFLAGLNPKFDVVRGRILGQRPIPSLMEVCSEIRLEEDRTSAMNISATPTIDSAAFSARSSNSSSDKHNGKPIPVCEHCKKQWHTKEQCWKLHGRPP

Query:  GSKKRPSNDKQNTGRAYVSES--AEPPQQSDPHKNQTDLSLATLGAIVQSGL
        G KKR SN+KQN+GRAY+SE+  A   Q +DP  +QT     TLGAI QSG+
Subjt:  GSKKRPSNDKQNTGRAYVSES--AEPPQQSDPHKNQTDLSLATLGAIVQSGL

TYJ97179.1 Beta-galactosidase [Cucumis melo var. makuwa]

9.14e-163

71.31

Show/hide

Query:  RQQIAALEATLGTTST-LPMYSENPVNSFSNVSSPYLTNTVAQSSMYHLSGEKLNGNNYFSWSQSVKMVLEGRQKFSFLTGEIPRPQPGDPHERYWKAED
        R  I A E++  +  T LPMYS+NPV SF N  S Y+T ++  SS  + SGEKLNG NYFSWSQS+KM LEGR +F FLTGEI RP PGD  ER WK ED
Subjt:  RQQIAALEATLGTTST-LPMYSENPVNSFSNVSSPYLTNTVAQSSMYHLSGEKLNGNNYFSWSQSVKMVLEGRQKFSFLTGEIPRPQPGDPHERYWKAED

Query:  SILRSILINSMEPQIGKPLLFAATAKDIWDTAQTLYSKRQNASRLYTLRKQVHECKQGTMDVTSFFNKLSLIWQEMDLCRELVWRDPTDGVQYSRIEEND
        S++RS+LINSMEPQIGKPLL+A TAKD+WDT QTLYSKRQNASRLYTLRKQVH CKQGT+DVT++FNKLSL+WQEMDLCRE VW  P D  QY+++EE D
Subjt:  SILRSILINSMEPQIGKPLLFAATAKDIWDTAQTLYSKRQNASRLYTLRKQVHECKQGTMDVTSFFNKLSLIWQEMDLCRELVWRDPTDGVQYSRIEEND

Query:  RIYDFLAGLNPKFDVVRGRILGQRPIPSLMEVCSEIRLEEDRTSAMNISATPTIDSAAFSARSSNSSSDKHNGKPIPVCEHCKKQWHTKEQCWKLHGRPP
        R+YDFLAGLNPKFD V GRILGQRP+PSLMEVC E+RLEEDRT+AM +  TPTIDSAAFSARSSN  SDK+NGK IPVCEHCKKQWHTK+QCWKLHGRPP
Subjt:  RIYDFLAGLNPKFDVVRGRILGQRPIPSLMEVCSEIRLEEDRTSAMNISATPTIDSAAFSARSSNSSSDKHNGKPIPVCEHCKKQWHTKEQCWKLHGRPP

Query:  GSKKRPSNDKQNTGRAYVSES--AEPPQQSDPHKNQTDLSLATLGAIVQSGL
        G KKR SN+KQN+GRAY+SE+  A   Q +DP  +QT     TLGAI QSG+
Subjt:  GSKKRPSNDKQNTGRAYVSES--AEPPQQSDPHKNQTDLSLATLGAIVQSGL

TYJ99952.1 Beta-galactosidase [Cucumis melo var. makuwa]

1.61e-162

71.31

Show/hide

Query:  RQQIAALEATLGTTST-LPMYSENPVNSFSNVSSPYLTNTVAQSSMYHLSGEKLNGNNYFSWSQSVKMVLEGRQKFSFLTGEIPRPQPGDPHERYWKAED
        R  I A E++  +  T LPMYS+NPV SF N  S Y+T ++  SS  + SGEKLNG NYFSWSQS+KM LEGR +F FLTGEI RP PGD  ER WK ED
Subjt:  RQQIAALEATLGTTST-LPMYSENPVNSFSNVSSPYLTNTVAQSSMYHLSGEKLNGNNYFSWSQSVKMVLEGRQKFSFLTGEIPRPQPGDPHERYWKAED

Query:  SILRSILINSMEPQIGKPLLFAATAKDIWDTAQTLYSKRQNASRLYTLRKQVHECKQGTMDVTSFFNKLSLIWQEMDLCRELVWRDPTDGVQYSRIEEND
        S++RS+LINSMEPQIGKPLL+A TAKD+WDT QTLYSKRQNASRLYTLRKQVH CKQGT+DVT++FNKLSL+WQEMDLCRE VW  P D  QY+++EE D
Subjt:  SILRSILINSMEPQIGKPLLFAATAKDIWDTAQTLYSKRQNASRLYTLRKQVHECKQGTMDVTSFFNKLSLIWQEMDLCRELVWRDPTDGVQYSRIEEND

Query:  RIYDFLAGLNPKFDVVRGRILGQRPIPSLMEVCSEIRLEEDRTSAMNISATPTIDSAAFSARSSNSSSDKHNGKPIPVCEHCKKQWHTKEQCWKLHGRPP
        R+YDFLAGLNPKFD V GRILGQRP+PSLMEVC E+RLEEDRT+AM +  TPTIDSAAFSARSSN  SDK+NGK IPVCEHCKKQWHTK+QCWKLHGRPP
Subjt:  RIYDFLAGLNPKFDVVRGRILGQRPIPSLMEVCSEIRLEEDRTSAMNISATPTIDSAAFSARSSNSSSDKHNGKPIPVCEHCKKQWHTKEQCWKLHGRPP

Query:  GSKKRPSNDKQNTGRAYVSES--AEPPQQSDPHKNQTDLSLATLGAIVQSGL
        G KKR SN+KQN+GRAY+SE+  A   Q +DP  +QT     TLGAI QSG+
Subjt:  GSKKRPSNDKQNTGRAYVSES--AEPPQQSDPHKNQTDLSLATLGAIVQSGL

TYK22409.1 Beta-galactosidase [Cucumis melo var. makuwa]

8.85e-163

71.31

Show/hide

Query:  RQQIAALEATLGTTST-LPMYSENPVNSFSNVSSPYLTNTVAQSSMYHLSGEKLNGNNYFSWSQSVKMVLEGRQKFSFLTGEIPRPQPGDPHERYWKAED
        R  I A E++  +  T LPMYS+NPV SF N  S Y+T ++  SS  + SGEKLNG NYFSWSQS+KM LEGR +F FLTGEI RP PGD  ER WK ED
Subjt:  RQQIAALEATLGTTST-LPMYSENPVNSFSNVSSPYLTNTVAQSSMYHLSGEKLNGNNYFSWSQSVKMVLEGRQKFSFLTGEIPRPQPGDPHERYWKAED

Query:  SILRSILINSMEPQIGKPLLFAATAKDIWDTAQTLYSKRQNASRLYTLRKQVHECKQGTMDVTSFFNKLSLIWQEMDLCRELVWRDPTDGVQYSRIEEND
        S++RS+LINSMEPQIGKPLL+A TAKD+WDT QTLYSKRQNASRLYTLRKQVH CKQGT+DVT++FNKLSL+WQEMDLCRE VW  P D  QY+++EE D
Subjt:  SILRSILINSMEPQIGKPLLFAATAKDIWDTAQTLYSKRQNASRLYTLRKQVHECKQGTMDVTSFFNKLSLIWQEMDLCRELVWRDPTDGVQYSRIEEND

Query:  RIYDFLAGLNPKFDVVRGRILGQRPIPSLMEVCSEIRLEEDRTSAMNISATPTIDSAAFSARSSNSSSDKHNGKPIPVCEHCKKQWHTKEQCWKLHGRPP
        R+YDFLAGLNPKFD V GRILGQRP+PSLMEVC E+RLEEDRT+AM +  TPTIDSAAFSARSSN  SDK+NGK IPVCEHCKKQWHTK+QCWKLHGRPP
Subjt:  RIYDFLAGLNPKFDVVRGRILGQRPIPSLMEVCSEIRLEEDRTSAMNISATPTIDSAAFSARSSNSSSDKHNGKPIPVCEHCKKQWHTKEQCWKLHGRPP

Query:  GSKKRPSNDKQNTGRAYVSES--AEPPQQSDPHKNQTDLSLATLGAIVQSGL
        G KKR SN+KQN+GRAY+SE+  A   Q +DP  +QT     TLGAI QSG+
Subjt:  GSKKRPSNDKQNTGRAYVSES--AEPPQQSDPHKNQTDLSLATLGAIVQSGL

TYK31050.1 Beta-galactosidase [Cucumis melo var. makuwa]

9.76e-163

71.31

Show/hide

Query:  RQQIAALEATLGTTST-LPMYSENPVNSFSNVSSPYLTNTVAQSSMYHLSGEKLNGNNYFSWSQSVKMVLEGRQKFSFLTGEIPRPQPGDPHERYWKAED
        R  I A E++  +  T LPMYS+NPV SF N  S Y+T ++  SS  + SGEKLNG NYFSWSQS+KM LEGR +F FLTGEI RP PGD  ER WK ED
Subjt:  RQQIAALEATLGTTST-LPMYSENPVNSFSNVSSPYLTNTVAQSSMYHLSGEKLNGNNYFSWSQSVKMVLEGRQKFSFLTGEIPRPQPGDPHERYWKAED

Query:  SILRSILINSMEPQIGKPLLFAATAKDIWDTAQTLYSKRQNASRLYTLRKQVHECKQGTMDVTSFFNKLSLIWQEMDLCRELVWRDPTDGVQYSRIEEND
        S++RS+LINSMEPQIGKPLL+A TAKD+WDT QTLYSKRQNASRLYTLRKQVH CKQGT+DVT++FNKLSL+WQEMDLCRE VW  P D  QY+++EE D
Subjt:  SILRSILINSMEPQIGKPLLFAATAKDIWDTAQTLYSKRQNASRLYTLRKQVHECKQGTMDVTSFFNKLSLIWQEMDLCRELVWRDPTDGVQYSRIEEND

Query:  RIYDFLAGLNPKFDVVRGRILGQRPIPSLMEVCSEIRLEEDRTSAMNISATPTIDSAAFSARSSNSSSDKHNGKPIPVCEHCKKQWHTKEQCWKLHGRPP
        R+YDFLAGLNPKFD V GRILGQRP+PSLMEVC E+RLEEDRT+AM +  TPTIDSAAFSARSSN  SDK+NGK IPVCEHCKKQWHTK+QCWKLHGRPP
Subjt:  RIYDFLAGLNPKFDVVRGRILGQRPIPSLMEVCSEIRLEEDRTSAMNISATPTIDSAAFSARSSNSSSDKHNGKPIPVCEHCKKQWHTKEQCWKLHGRPP

Query:  GSKKRPSNDKQNTGRAYVSES--AEPPQQSDPHKNQTDLSLATLGAIVQSGL
        G KKR SN+KQN+GRAY+SE+  A   Q +DP  +QT     TLGAI QSG+
Subjt:  GSKKRPSNDKQNTGRAYVSES--AEPPQQSDPHKNQTDLSLATLGAIVQSGL

TrEMBL top hits

e value

%identity

Alignment

A0A5A7UT88 Beta-galactosidase

2.05e-163

71.59

Show/hide

Query:  RQQIAALEATLGTTST-LPMYSENPVNSFSNVSSPYLTNTVAQSSMYHLSGEKLNGNNYFSWSQSVKMVLEGRQKFSFLTGEIPRPQPGDPHERYWKAED
        R  I A E++  +  T LPMYS+NPV SFSN  S Y+T ++  SS  + SGEKLNG NYFSWSQS+KM LEGR +F FLTGE  RP PGD  ER WK ED
Subjt:  RQQIAALEATLGTTST-LPMYSENPVNSFSNVSSPYLTNTVAQSSMYHLSGEKLNGNNYFSWSQSVKMVLEGRQKFSFLTGEIPRPQPGDPHERYWKAED

Query:  SILRSILINSMEPQIGKPLLFAATAKDIWDTAQTLYSKRQNASRLYTLRKQVHECKQGTMDVTSFFNKLSLIWQEMDLCRELVWRDPTDGVQYSRIEEND
        S++RS+LINSMEPQIGKPLL+AATAKD+WDT QTLYSKRQNASRLYTLRKQVH CKQGT+DVT++FNKLSL+WQEMDLCRE VW  P D  QY+++EE D
Subjt:  SILRSILINSMEPQIGKPLLFAATAKDIWDTAQTLYSKRQNASRLYTLRKQVHECKQGTMDVTSFFNKLSLIWQEMDLCRELVWRDPTDGVQYSRIEEND

Query:  RIYDFLAGLNPKFDVVRGRILGQRPIPSLMEVCSEIRLEEDRTSAMNISATPTIDSAAFSARSSNSSSDKHNGKPIPVCEHCKKQWHTKEQCWKLHGRPP
        R+YDFLAGLNPKFD V GRILGQRP+PSLMEVC E+RLEEDRT+AM +  TPTIDSAAFSARSSN  SDK+NGK IPVCEHCKKQWHTK+QCWKLHGRPP
Subjt:  RIYDFLAGLNPKFDVVRGRILGQRPIPSLMEVCSEIRLEEDRTSAMNISATPTIDSAAFSARSSNSSSDKHNGKPIPVCEHCKKQWHTKEQCWKLHGRPP

Query:  GSKKRPSNDKQNTGRAYVSES--AEPPQQSDPHKNQTDLSLATLGAIVQSGL
        G KKR SN+KQN+GRAY+SE+  A   Q +DP  +QT     TLGAI QSG+
Subjt:  GSKKRPSNDKQNTGRAYVSES--AEPPQQSDPHKNQTDLSLATLGAIVQSGL

A0A5D3BDV4 Beta-galactosidase

4.43e-163

71.31

Show/hide

Query:  RQQIAALEATLGTTST-LPMYSENPVNSFSNVSSPYLTNTVAQSSMYHLSGEKLNGNNYFSWSQSVKMVLEGRQKFSFLTGEIPRPQPGDPHERYWKAED
        R  I A E++  +  T LPMYS+NPV SF N  S Y+T ++  SS  + SGEKLNG NYFSWSQS+KM LEGR +F FLTGEI RP PGD  ER WK ED
Subjt:  RQQIAALEATLGTTST-LPMYSENPVNSFSNVSSPYLTNTVAQSSMYHLSGEKLNGNNYFSWSQSVKMVLEGRQKFSFLTGEIPRPQPGDPHERYWKAED

Query:  SILRSILINSMEPQIGKPLLFAATAKDIWDTAQTLYSKRQNASRLYTLRKQVHECKQGTMDVTSFFNKLSLIWQEMDLCRELVWRDPTDGVQYSRIEEND
        S++RS+LINSMEPQIGKPLL+A TAKD+WDT QTLYSKRQNASRLYTLRKQVH CKQGT+DVT++FNKLSL+WQEMDLCRE VW  P D  QY+++EE D
Subjt:  SILRSILINSMEPQIGKPLLFAATAKDIWDTAQTLYSKRQNASRLYTLRKQVHECKQGTMDVTSFFNKLSLIWQEMDLCRELVWRDPTDGVQYSRIEEND

Query:  RIYDFLAGLNPKFDVVRGRILGQRPIPSLMEVCSEIRLEEDRTSAMNISATPTIDSAAFSARSSNSSSDKHNGKPIPVCEHCKKQWHTKEQCWKLHGRPP
        R+YDFLAGLNPKFD V GRILGQRP+PSLMEVC E+RLEEDRT+AM +  TPTIDSAAFSARSSN  SDK+NGK IPVCEHCKKQWHTK+QCWKLHGRPP
Subjt:  RIYDFLAGLNPKFDVVRGRILGQRPIPSLMEVCSEIRLEEDRTSAMNISATPTIDSAAFSARSSNSSSDKHNGKPIPVCEHCKKQWHTKEQCWKLHGRPP

Query:  GSKKRPSNDKQNTGRAYVSES--AEPPQQSDPHKNQTDLSLATLGAIVQSGL
        G KKR SN+KQN+GRAY+SE+  A   Q +DP  +QT     TLGAI QSG+
Subjt:  GSKKRPSNDKQNTGRAYVSES--AEPPQQSDPHKNQTDLSLATLGAIVQSGL

A0A5D3BJK7 Beta-galactosidase

7.79e-163

71.31

Show/hide

Query:  RQQIAALEATLGTTST-LPMYSENPVNSFSNVSSPYLTNTVAQSSMYHLSGEKLNGNNYFSWSQSVKMVLEGRQKFSFLTGEIPRPQPGDPHERYWKAED
        R  I A E++  +  T LPMYS+NPV SF N  S Y+T ++  SS  + SGEKLNG NYFSWSQS+KM LEGR +F FLTGEI RP PGD  ER WK ED
Subjt:  RQQIAALEATLGTTST-LPMYSENPVNSFSNVSSPYLTNTVAQSSMYHLSGEKLNGNNYFSWSQSVKMVLEGRQKFSFLTGEIPRPQPGDPHERYWKAED

Query:  SILRSILINSMEPQIGKPLLFAATAKDIWDTAQTLYSKRQNASRLYTLRKQVHECKQGTMDVTSFFNKLSLIWQEMDLCRELVWRDPTDGVQYSRIEEND
        S++RS+LINSMEPQIGKPLL+A TAKD+WDT QTLYSKRQNASRLYTLRKQVH CKQGT+DVT++FNKLSL+WQEMDLCRE VW  P D  QY+++EE D
Subjt:  SILRSILINSMEPQIGKPLLFAATAKDIWDTAQTLYSKRQNASRLYTLRKQVHECKQGTMDVTSFFNKLSLIWQEMDLCRELVWRDPTDGVQYSRIEEND

Query:  RIYDFLAGLNPKFDVVRGRILGQRPIPSLMEVCSEIRLEEDRTSAMNISATPTIDSAAFSARSSNSSSDKHNGKPIPVCEHCKKQWHTKEQCWKLHGRPP
        R+YDFLAGLNPKFD V GRILGQRP+PSLMEVC E+RLEEDRT+AM +  TPTIDSAAFSARSSN  SDK+NGK IPVCEHCKKQWHTK+QCWKLHGRPP
Subjt:  RIYDFLAGLNPKFDVVRGRILGQRPIPSLMEVCSEIRLEEDRTSAMNISATPTIDSAAFSARSSNSSSDKHNGKPIPVCEHCKKQWHTKEQCWKLHGRPP

Query:  GSKKRPSNDKQNTGRAYVSES--AEPPQQSDPHKNQTDLSLATLGAIVQSGL
        G KKR SN+KQN+GRAY+SE+  A   Q +DP  +QT     TLGAI QSG+
Subjt:  GSKKRPSNDKQNTGRAYVSES--AEPPQQSDPHKNQTDLSLATLGAIVQSGL

A0A5D3DGL7 Beta-galactosidase

4.28e-163

71.31

Show/hide

Query:  RQQIAALEATLGTTST-LPMYSENPVNSFSNVSSPYLTNTVAQSSMYHLSGEKLNGNNYFSWSQSVKMVLEGRQKFSFLTGEIPRPQPGDPHERYWKAED
        R  I A E++  +  T LPMYS+NPV SF N  S Y+T ++  SS  + SGEKLNG NYFSWSQS+KM LEGR +F FLTGEI RP PGD  ER WK ED
Subjt:  RQQIAALEATLGTTST-LPMYSENPVNSFSNVSSPYLTNTVAQSSMYHLSGEKLNGNNYFSWSQSVKMVLEGRQKFSFLTGEIPRPQPGDPHERYWKAED

Query:  SILRSILINSMEPQIGKPLLFAATAKDIWDTAQTLYSKRQNASRLYTLRKQVHECKQGTMDVTSFFNKLSLIWQEMDLCRELVWRDPTDGVQYSRIEEND
        S++RS+LINSMEPQIGKPLL+A TAKD+WDT QTLYSKRQNASRLYTLRKQVH CKQGT+DVT++FNKLSL+WQEMDLCRE VW  P D  QY+++EE D
Subjt:  SILRSILINSMEPQIGKPLLFAATAKDIWDTAQTLYSKRQNASRLYTLRKQVHECKQGTMDVTSFFNKLSLIWQEMDLCRELVWRDPTDGVQYSRIEEND

Query:  RIYDFLAGLNPKFDVVRGRILGQRPIPSLMEVCSEIRLEEDRTSAMNISATPTIDSAAFSARSSNSSSDKHNGKPIPVCEHCKKQWHTKEQCWKLHGRPP
        R+YDFLAGLNPKFD V GRILGQRP+PSLMEVC E+RLEEDRT+AM +  TPTIDSAAFSARSSN  SDK+NGK IPVCEHCKKQWHTK+QCWKLHGRPP
Subjt:  RIYDFLAGLNPKFDVVRGRILGQRPIPSLMEVCSEIRLEEDRTSAMNISATPTIDSAAFSARSSNSSSDKHNGKPIPVCEHCKKQWHTKEQCWKLHGRPP

Query:  GSKKRPSNDKQNTGRAYVSES--AEPPQQSDPHKNQTDLSLATLGAIVQSGL
        G KKR SN+KQN+GRAY+SE+  A   Q +DP  +QT     TLGAI QSG+
Subjt:  GSKKRPSNDKQNTGRAYVSES--AEPPQQSDPHKNQTDLSLATLGAIVQSGL

A0A5D3E603 Beta-galactosidase

4.73e-163

71.31

Show/hide

Query:  RQQIAALEATLGTTST-LPMYSENPVNSFSNVSSPYLTNTVAQSSMYHLSGEKLNGNNYFSWSQSVKMVLEGRQKFSFLTGEIPRPQPGDPHERYWKAED
        R  I A E++  +  T LPMYS+NPV SF N  S Y+T ++  SS  + SGEKLNG NYFSWSQS+KM LEGR +F FLTGEI RP PGD  ER WK ED
Subjt:  RQQIAALEATLGTTST-LPMYSENPVNSFSNVSSPYLTNTVAQSSMYHLSGEKLNGNNYFSWSQSVKMVLEGRQKFSFLTGEIPRPQPGDPHERYWKAED

Query:  SILRSILINSMEPQIGKPLLFAATAKDIWDTAQTLYSKRQNASRLYTLRKQVHECKQGTMDVTSFFNKLSLIWQEMDLCRELVWRDPTDGVQYSRIEEND
        S++RS+LINSMEPQIGKPLL+A TAKD+WDT QTLYSKRQNASRLYTLRKQVH CKQGT+DVT++FNKLSL+WQEMDLCRE VW  P D  QY+++EE D
Subjt:  SILRSILINSMEPQIGKPLLFAATAKDIWDTAQTLYSKRQNASRLYTLRKQVHECKQGTMDVTSFFNKLSLIWQEMDLCRELVWRDPTDGVQYSRIEEND

Query:  RIYDFLAGLNPKFDVVRGRILGQRPIPSLMEVCSEIRLEEDRTSAMNISATPTIDSAAFSARSSNSSSDKHNGKPIPVCEHCKKQWHTKEQCWKLHGRPP
        R+YDFLAGLNPKFD V GRILGQRP+PSLMEVC E+RLEEDRT+AM +  TPTIDSAAFSARSSN  SDK+NGK IPVCEHCKKQWHTK+QCWKLHGRPP
Subjt:  RIYDFLAGLNPKFDVVRGRILGQRPIPSLMEVCSEIRLEEDRTSAMNISATPTIDSAAFSARSSNSSSDKHNGKPIPVCEHCKKQWHTKEQCWKLHGRPP

Query:  GSKKRPSNDKQNTGRAYVSES--AEPPQQSDPHKNQTDLSLATLGAIVQSGL
        G KKR SN+KQN+GRAY+SE+  A   Q +DP  +QT     TLGAI QSG+
Subjt:  GSKKRPSNDKQNTGRAYVSES--AEPPQQSDPHKNQTDLSLATLGAIVQSGL

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G21280.1 CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

1.9e-17

26.13

Show/hide

Query:  VNSFSNVSSP-YLTNTVAQSSMYHLSGEKLNGNNYFSWSQSVKMVLEGRQKFSFLTGEIPRPQPGDPHERYWKAEDSILRSILINSMEPQIGKPLLFAAT
        V+  S+  SP YL   +   S + +     + +NY +W    +  L   +KF F+ G +P+P P  P  + W+  ++++   L+NSM  ++ + +++A T
Subjt:  VNSFSNVSSP-YLTNTVAQSSMYHLSGEKLNGNNYFSWSQSVKMVLEGRQKFSFLTGEIPRPQPGDPHERYWKAEDSILRSILINSMEPQIGKPLLFAAT

Query:  AKDIWDTAQTLYSKRQNASRLYTLRKQVHECKQGTMDVTSFFNKLSLIWQEMDLCREL-------VWRDPTDGVQYSRIEENDRIYDFLAG--LNPKFDV
        A  +W+  + ++    +  ++Y LR+++   +QG   V  +F KLS +W E+     +          + T   + +R  E ++ Y+FL G  LN  F+ 
Subjt:  AKDIWDTAQTLYSKRQNASRLYTLRKQVHECKQGTMDVTSFFNKLSLIWQEMDLCREL-------VWRDPTDGVQYSRIEENDRIYDFLAG--LNPKFDV

Query:  VRGRILGQRPIPSLMEVCSEIR
        V  +I+ Q+P PSL E  + ++
Subjt:  VRGRILGQRPIPSLMEVCSEIR

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

GGGCTTCGACAACAGATAGCAGCACTTGAGGCTACCTTAGGGACGACATCCACTCTACCGATGTATTCTGAGAATCCGGTAAACTCGTTCTCTAATGTATCCTCTCCTTA
TTTGACTAATACGGTGGCTCAGTCTTCCATGTATCATCTTTCAGGAGAAAAGTTGAATGGCAACAACTATTTCTCATGGTCTCAGTCAGTAAAGATGGTCCTCGAAGGAC
GACAAAAATTTAGCTTTCTGACAGGGGAAATACCTCGCCCCCAACCGGGCGACCCACATGAACGATATTGGAAGGCAGAAGACTCTATTCTTCGATCCATATTGATCAAT
AGTATGGAACCTCAAATTGGCAAGCCGTTATTGTTTGCTGCAACAGCCAAGGATATTTGGGACACAGCCCAGACACTTTACTCAAAACGTCAGAATGCCTCTCGTCTATA
CACGCTGAGAAAGCAAGTTCATGAATGCAAGCAAGGAACCATGGATGTCACATCCTTTTTCAATAAGCTTTCTCTTATATGGCAAGAAATGGACCTATGCAGAGAACTAG
TCTGGCGTGATCCCACTGATGGTGTACAGTACTCGAGAATTGAAGAGAATGACAGGATTTATGACTTTCTTGCTGGTCTTAATCCTAAGTTTGATGTAGTTCGAGGGCGT
ATACTAGGTCAAAGACCGATTCCCTCCCTGATGGAAGTTTGCTCTGAAATCCGCCTCGAGGAAGATCGCACAAGTGCTATGAATATTTCCGCAACCCCTACTATTGACTC
TGCTGCTTTTAGTGCAAGATCTTCTAACAGTAGCAGTGACAAGCATAATGGAAAACCAATTCCTGTCTGTGAGCATTGCAAAAAACAATGGCATACCAAAGAACAATGTT
GGAAGTTACATGGTCGTCCCCCAGGAAGTAAGAAACGCCCTTCCAATGACAAACAGAACACAGGGCGGGCGTATGTGAGTGAGTCTGCTGAACCTCCTCAACAATCCGAC
CCACACAAAAACCAAACTGATCTCAGTCTTGCCACTTTAGGTGCCATTGTCCAATCAGGACTTGAGCTCGGGGAGGATGATTGGCACTGCCCGGCATAG

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

GLRQQIAALEATLGTTSTLPMYSENPVNSFSNVSSPYLTNTVAQSSMYHLSGEKLNGNNYFSWSQSVKMVLEGRQKFSFLTGEIPRPQPGDPHERYWKAEDSILRSILIN
SMEPQIGKPLLFAATAKDIWDTAQTLYSKRQNASRLYTLRKQVHECKQGTMDVTSFFNKLSLIWQEMDLCRELVWRDPTDGVQYSRIEENDRIYDFLAGLNPKFDVVRGR
ILGQRPIPSLMEVCSEIRLEEDRTSAMNISATPTIDSAAFSARSSNSSSDKHNGKPIPVCEHCKKQWHTKEQCWKLHGRPPGSKKRPSNDKQNTGRAYVSESAEPPQQSD
PHKNQTDLSLATLGAIVQSGLELGEDDWHCPA

Cucsat.G13722 (gene) of Cucumber (B10) v3 genome