CuGenDBv2

Gene ID	Cucsat.G13887
Organism	Cucumis sativus L. var. sativus cv. B10 (Cucumber (B10) v3)
Description	kinetochore protein SPC24 homolog
Genome location	ctg184:2311836..2315471
RNA-Seq Expression	Cucsat.G13887
Synteny	Cucsat.G13887
Gene Ontology terms	GO:0051983 - regulation of chromosome segregation (biological process)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_004148609.1 kinetochore protein SPC24 homolog [Cucumis sativus]

5.24e-136

100

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Query:  MGDFATNSNIEELASFADDLVAILKDPTDVRNLNQCLEHFKTLQSSCDDDFTSVQSSLEDYEKKIKACREKTEEAKANTVADDEMEILEKELEEEIGKGH
        MGDFATNSNIEELASFADDLVAILKDPTDVRNLNQCLEHFKTLQSSCDDDFTSVQSSLEDYEKKIKACREKTEEAKANTVADDEMEILEKELEEEIGKGH
Subjt:  MGDFATNSNIEELASFADDLVAILKDPTDVRNLNQCLEHFKTLQSSCDDDFTSVQSSLEDYEKKIKACREKTEEAKANTVADDEMEILEKELEEEIGKGH

Query:  LLMEEIRLVTNEINELECRRVSVQERKQAMKKLEQQELWAQRKLSMYASVTDIIPNMEDQSKISGHIVDRNKRVVQKFEFDPAKISSFDTCNGLWNMINS
        LLMEEIRLVTNEINELECRRVSVQERKQAMKKLEQQELWAQRKLSMYASVTDIIPNMEDQSKISGHIVDRNKRVVQKFEFDPAKISSFDTCNGLWNMINS
Subjt:  LLMEEIRLVTNEINELECRRVSVQERKQAMKKLEQQELWAQRKLSMYASVTDIIPNMEDQSKISGHIVDRNKRVVQKFEFDPAKISSFDTCNGLWNMINS

Query:  P
        P
Subjt:  P

XP_008464222.1 PREDICTED: uncharacterized protein LOC103502153 [Cucumis melo]

2.29e-130

96.02

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Query:  MGDFATNSNIEELASFADDLVAILKDPTDVRNLNQCLEHFKTLQSSCDDDFTSVQSSLEDYEKKIKACREKTEEAKANTVADDEMEILEKELEEEIGKGH
        MGDFATNSNIEELASFADDLVAILKDPTDV NLNQCLEHFKTLQSSCDDDF SVQSS+EDYEKKIKACREKTEEAKANTVADDEMEILEKELEEE+GKGH
Subjt:  MGDFATNSNIEELASFADDLVAILKDPTDVRNLNQCLEHFKTLQSSCDDDFTSVQSSLEDYEKKIKACREKTEEAKANTVADDEMEILEKELEEEIGKGH

Query:  LLMEEIRLVTNEINELECRRVSVQERKQAMKKLEQQELWAQRKLSMYASVTDIIPNMEDQSKISGHIVDRNKRVVQKFEFDPAKISSFDTCNGLWNMINS
        LLMEEIRLVTNEINELE +RVSVQERKQAMKKLEQQELWAQRKLSMYASVTDIIPNM+DQSKISGHIVDRNKRVVQKFEFDP KISSFDTCNGLWNMINS
Subjt:  LLMEEIRLVTNEINELECRRVSVQERKQAMKKLEQQELWAQRKLSMYASVTDIIPNMEDQSKISGHIVDRNKRVVQKFEFDPAKISSFDTCNGLWNMINS

Query:  P
        P
Subjt:  P

XP_022950424.1 uncharacterized protein LOC111453528 [Cucurbita moschata]

1.84e-104

77.61

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Query:  MGDFATNSNIEELASFADDLVAILKDPTDVRNLNQCLEHFKTLQSSCDDDFTSVQSSLEDYEKKIKACREKTEEAKANTVADDEMEILEKELEEEIGKGH
        M DFA   NIEEL S+ DDLVA+L D  DV+ LNQCLEHFKTLQSSC DDF++VQSS++DYEKKI+ACR+KTEEA+ +TV+DDE++ILEKEL EE+GKG+
Subjt:  MGDFATNSNIEELASFADDLVAILKDPTDVRNLNQCLEHFKTLQSSCDDDFTSVQSSLEDYEKKIKACREKTEEAKANTVADDEMEILEKELEEEIGKGH

Query:  LLMEEIRLVTNEINELECRRVSVQERKQAMKKLEQQELWAQRKLSMYASVTDIIPNMEDQSKISGHIVDRNKRVVQKFEFDPAKISSFDTCNGLWNMINS
        LLMEEIR++T+EIN+L+ +R+SVQERKQAMKKLEQQEL  QRKLSMYASVTDIIPNM+DQSKISGHIVDRNKRVVQ+FEFDP  ISSFD CNG+WNMINS
Subjt:  LLMEEIRLVTNEINELECRRVSVQERKQAMKKLEQQELWAQRKLSMYASVTDIIPNMEDQSKISGHIVDRNKRVVQKFEFDPAKISSFDTCNGLWNMINS

Query:  P
        P
Subjt:  P

XP_022978290.1 uncharacterized protein LOC111478320 [Cucurbita maxima]

1.12e-105

78.61

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Query:  MGDFATNSNIEELASFADDLVAILKDPTDVRNLNQCLEHFKTLQSSCDDDFTSVQSSLEDYEKKIKACREKTEEAKANTVADDEMEILEKELEEEIGKGH
        M DFA   NIEE+ S+ DDLVA+L D  DV+ LNQCLEHFKTLQSSC DDF++VQSS++DYEKKI+ACR+KTEEAKA+TVADDE++ILEKEL EE+GKG+
Subjt:  MGDFATNSNIEELASFADDLVAILKDPTDVRNLNQCLEHFKTLQSSCDDDFTSVQSSLEDYEKKIKACREKTEEAKANTVADDEMEILEKELEEEIGKGH

Query:  LLMEEIRLVTNEINELECRRVSVQERKQAMKKLEQQELWAQRKLSMYASVTDIIPNMEDQSKISGHIVDRNKRVVQKFEFDPAKISSFDTCNGLWNMINS
        LLMEEIR++T+EIN+L+ +R+SVQERKQAMKKLEQQEL  QRKLSMYASVTDIIPNM+DQSKISGHIVDRNKRVVQ+FEFDP  ISSFD CNG+WNMINS
Subjt:  LLMEEIRLVTNEINELECRRVSVQERKQAMKKLEQQELWAQRKLSMYASVTDIIPNMEDQSKISGHIVDRNKRVVQKFEFDPAKISSFDTCNGLWNMINS

Query:  P
        P
Subjt:  P

XP_038883770.1 kinetochore protein SPC24 homolog [Benincasa hispida]

1.63e-114

83.58

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Query:  MGDFATNSNIEELASFADDLVAILKDPTDVRNLNQCLEHFKTLQSSCDDDFTSVQSSLEDYEKKIKACREKTEEAKANTVADDEMEILEKELEEEIGKGH
        MGDF + SNIE   SFADDLVA+LKDP DV++LNQCLEHFK LQSSCDDDF+SVQS ++DYEKKIKAC++KTEEAKANTV DDEM ILEKEL+EE+GKGH
Subjt:  MGDFATNSNIEELASFADDLVAILKDPTDVRNLNQCLEHFKTLQSSCDDDFTSVQSSLEDYEKKIKACREKTEEAKANTVADDEMEILEKELEEEIGKGH

Query:  LLMEEIRLVTNEINELECRRVSVQERKQAMKKLEQQELWAQRKLSMYASVTDIIPNMEDQSKISGHIVDRNKRVVQKFEFDPAKISSFDTCNGLWNMINS
        LLMEEIRLVTNEINELE +R+S+QERKQAMKKLEQQELWAQRKLSMYASVTDIIPNM+DQSKISGHIVDR+KR+VQ+FEFD  KISSFD CNG+WNMINS
Subjt:  LLMEEIRLVTNEINELECRRVSVQERKQAMKKLEQQELWAQRKLSMYASVTDIIPNMEDQSKISGHIVDRNKRVVQKFEFDPAKISSFDTCNGLWNMINS

Query:  P
        P
Subjt:  P

TrEMBL top hits

e value

%identity

Alignment

A0A1S3CKZ4 uncharacterized protein LOC103502153

1.11e-130

96.02

Show/hide

Query:  MGDFATNSNIEELASFADDLVAILKDPTDVRNLNQCLEHFKTLQSSCDDDFTSVQSSLEDYEKKIKACREKTEEAKANTVADDEMEILEKELEEEIGKGH
        MGDFATNSNIEELASFADDLVAILKDPTDV NLNQCLEHFKTLQSSCDDDF SVQSS+EDYEKKIKACREKTEEAKANTVADDEMEILEKELEEE+GKGH
Subjt:  MGDFATNSNIEELASFADDLVAILKDPTDVRNLNQCLEHFKTLQSSCDDDFTSVQSSLEDYEKKIKACREKTEEAKANTVADDEMEILEKELEEEIGKGH

Query:  LLMEEIRLVTNEINELECRRVSVQERKQAMKKLEQQELWAQRKLSMYASVTDIIPNMEDQSKISGHIVDRNKRVVQKFEFDPAKISSFDTCNGLWNMINS
        LLMEEIRLVTNEINELE +RVSVQERKQAMKKLEQQELWAQRKLSMYASVTDIIPNM+DQSKISGHIVDRNKRVVQKFEFDP KISSFDTCNGLWNMINS
Subjt:  LLMEEIRLVTNEINELECRRVSVQERKQAMKKLEQQELWAQRKLSMYASVTDIIPNMEDQSKISGHIVDRNKRVVQKFEFDPAKISSFDTCNGLWNMINS

Query:  P
        P
Subjt:  P

A0A6J1CQL9 uncharacterized protein LOC111013852 isoform X2

4.76e-99

76.12

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Query:  MGDFATNSNIEELASFADDLVAILKDPTDVRNLNQCLEHFKTLQSSCDDDFTSVQSSLEDYEKKIKACREKTEEAKANTVADDEMEILEKELEEEIGKGH
        MGDF+   NIEEL S+ +DLVA+LKD  DV+ LNQCLEH K LQS CDDDF++V +    YEKKI+ACR+KTEEAKA TVAD EM++LE+ELEEE+ K H
Subjt:  MGDFATNSNIEELASFADDLVAILKDPTDVRNLNQCLEHFKTLQSSCDDDFTSVQSSLEDYEKKIKACREKTEEAKANTVADDEMEILEKELEEEIGKGH

Query:  LLMEEIRLVTNEINELECRRVSVQERKQAMKKLEQQELWAQRKLSMYASVTDIIPNMEDQSKISGHIVDRNKRVVQKFEFDPAKISSFDTCNGLWNMINS
        LLMEEIRLVT+EINEL+C+R+SVQERKQAMKKLEQQEL AQRKLSMYASVTDIIPNM+DQSKISGHIVDRNKRVVQKFE DP K S+FD CN +W+MINS
Subjt:  LLMEEIRLVTNEINELECRRVSVQERKQAMKKLEQQELWAQRKLSMYASVTDIIPNMEDQSKISGHIVDRNKRVVQKFEFDPAKISSFDTCNGLWNMINS

Query:  P
        P
Subjt:  P

A0A6J1CR83 uncharacterized protein LOC111013852 isoform X1

1.48e-103

77.61

Show/hide

Query:  MGDFATNSNIEELASFADDLVAILKDPTDVRNLNQCLEHFKTLQSSCDDDFTSVQSSLEDYEKKIKACREKTEEAKANTVADDEMEILEKELEEEIGKGH
        MGDF+   NIEEL S+ +DLVA+LKD  DV+ LNQCLEH K LQS CDDDF++V SS++DYEKKI+ACR+KTEEAKA TVAD EM++LE+ELEEE+ K H
Subjt:  MGDFATNSNIEELASFADDLVAILKDPTDVRNLNQCLEHFKTLQSSCDDDFTSVQSSLEDYEKKIKACREKTEEAKANTVADDEMEILEKELEEEIGKGH

Query:  LLMEEIRLVTNEINELECRRVSVQERKQAMKKLEQQELWAQRKLSMYASVTDIIPNMEDQSKISGHIVDRNKRVVQKFEFDPAKISSFDTCNGLWNMINS
        LLMEEIRLVT+EINEL+C+R+SVQERKQAMKKLEQQEL AQRKLSMYASVTDIIPNM+DQSKISGHIVDRNKRVVQKFE DP K S+FD CN +W+MINS
Subjt:  LLMEEIRLVTNEINELECRRVSVQERKQAMKKLEQQELWAQRKLSMYASVTDIIPNMEDQSKISGHIVDRNKRVVQKFEFDPAKISSFDTCNGLWNMINS

Query:  P
        P
Subjt:  P

A0A6J1GFS1 uncharacterized protein LOC111453528

8.93e-105

77.61

Show/hide

Query:  MGDFATNSNIEELASFADDLVAILKDPTDVRNLNQCLEHFKTLQSSCDDDFTSVQSSLEDYEKKIKACREKTEEAKANTVADDEMEILEKELEEEIGKGH
        M DFA   NIEEL S+ DDLVA+L D  DV+ LNQCLEHFKTLQSSC DDF++VQSS++DYEKKI+ACR+KTEEA+ +TV+DDE++ILEKEL EE+GKG+
Subjt:  MGDFATNSNIEELASFADDLVAILKDPTDVRNLNQCLEHFKTLQSSCDDDFTSVQSSLEDYEKKIKACREKTEEAKANTVADDEMEILEKELEEEIGKGH

Query:  LLMEEIRLVTNEINELECRRVSVQERKQAMKKLEQQELWAQRKLSMYASVTDIIPNMEDQSKISGHIVDRNKRVVQKFEFDPAKISSFDTCNGLWNMINS
        LLMEEIR++T+EIN+L+ +R+SVQERKQAMKKLEQQEL  QRKLSMYASVTDIIPNM+DQSKISGHIVDRNKRVVQ+FEFDP  ISSFD CNG+WNMINS
Subjt:  LLMEEIRLVTNEINELECRRVSVQERKQAMKKLEQQELWAQRKLSMYASVTDIIPNMEDQSKISGHIVDRNKRVVQKFEFDPAKISSFDTCNGLWNMINS

Query:  P
        P
Subjt:  P

A0A6J1IPN8 uncharacterized protein LOC111478320

5.40e-106

78.61

Show/hide

Query:  MGDFATNSNIEELASFADDLVAILKDPTDVRNLNQCLEHFKTLQSSCDDDFTSVQSSLEDYEKKIKACREKTEEAKANTVADDEMEILEKELEEEIGKGH
        M DFA   NIEE+ S+ DDLVA+L D  DV+ LNQCLEHFKTLQSSC DDF++VQSS++DYEKKI+ACR+KTEEAKA+TVADDE++ILEKEL EE+GKG+
Subjt:  MGDFATNSNIEELASFADDLVAILKDPTDVRNLNQCLEHFKTLQSSCDDDFTSVQSSLEDYEKKIKACREKTEEAKANTVADDEMEILEKELEEEIGKGH

Query:  LLMEEIRLVTNEINELECRRVSVQERKQAMKKLEQQELWAQRKLSMYASVTDIIPNMEDQSKISGHIVDRNKRVVQKFEFDPAKISSFDTCNGLWNMINS
        LLMEEIR++T+EIN+L+ +R+SVQERKQAMKKLEQQEL  QRKLSMYASVTDIIPNM+DQSKISGHIVDRNKRVVQ+FEFDP  ISSFD CNG+WNMINS
Subjt:  LLMEEIRLVTNEINELECRRVSVQERKQAMKKLEQQELWAQRKLSMYASVTDIIPNMEDQSKISGHIVDRNKRVVQKFEFDPAKISSFDTCNGLWNMINS

Query:  P
        P
Subjt:  P

SwissProt top hits

e value

%identity

Alignment

Q67XT3 Kinetochore protein SPC24 homolog

1.7e-44

43.72

Show/hide

Query:  MGDFATNSNIEELASFADDLVAILKDPTDVRNLNQCLEHFKTLQSSCDDDFTSVQSSLEDYEKKIKACREKTEEAKANTVADDEMEILEKELEEEIGKGH
        MG+ + N +IE+L S+ DDL+ +L        ++Q  E FK L  +C +DF  +Q S+ED + K+ AC++KTEEA ++  A+DE+E L+KEL+EE+ +  
Subjt:  MGDFATNSNIEELASFADDLVAILKDPTDVRNLNQCLEHFKTLQSSCDDDFTSVQSSLEDYEKKIKACREKTEEAKANTVADDEMEILEKELEEEIGKGH

Query:  LLMEEIRLVTNEINELECRRVSVQERKQAMKKLEQQELWAQRKLSMYASVTDIIPNMEDQSKISGHIVDRNKRVVQKFEFDPAKISSFDTCNGLWNMIN
         L +E+RLV +E+ +L  +  S+ E KQ+ K+  + +L A++KLSMYASVT++IP+++D SKISG++VDR KR+++KF+F+  K+++++TCN +W++IN
Subjt:  LLMEEIRLVTNEINELECRRVSVQERKQAMKKLEQQELWAQRKLSMYASVTDIIPNMEDQSKISGHIVDRNKRVVQKFEFDPAKISSFDTCNGLWNMIN

Arabidopsis top hits

e value

%identity

Alignment

AT3G08880.1 unknown protein

1.2e-45

43.72

Show/hide

Query:  MGDFATNSNIEELASFADDLVAILKDPTDVRNLNQCLEHFKTLQSSCDDDFTSVQSSLEDYEKKIKACREKTEEAKANTVADDEMEILEKELEEEIGKGH
        MG+ + N +IE+L S+ DDL+ +L        ++Q  E FK L  +C +DF  +Q S+ED + K+ AC++KTEEA ++  A+DE+E L+KEL+EE+ +  
Subjt:  MGDFATNSNIEELASFADDLVAILKDPTDVRNLNQCLEHFKTLQSSCDDDFTSVQSSLEDYEKKIKACREKTEEAKANTVADDEMEILEKELEEEIGKGH

Query:  LLMEEIRLVTNEINELECRRVSVQERKQAMKKLEQQELWAQRKLSMYASVTDIIPNMEDQSKISGHIVDRNKRVVQKFEFDPAKISSFDTCNGLWNMIN
         L +E+RLV +E+ +L  +  S+ E KQ+ K+  + +L A++KLSMYASVT++IP+++D SKISG++VDR KR+++KF+F+  K+++++TCN +W++IN
Subjt:  LLMEEIRLVTNEINELECRRVSVQERKQAMKKLEQQELWAQRKLSMYASVTDIIPNMEDQSKISGHIVDRNKRVVQKFEFDPAKISSFDTCNGLWNMIN

AT5G01570.1 unknown protein

3.6e-29

38.92

Show/hide

Query:  NIEELASFADDLVAILKDPTDVRNLNQCLEHFKTLQSSCDDDFTSVQSSLEDYEKKIKACREKTEEAKANTVADDEMEILEKELEEEIGKGHLLMEEIRL
        N E + S+ D+L+ +L D      L Q LE  + +  SCD+DF  +  SL+D +KK+  C+EKT+EA +    ++E+E L+KEL+EE+     L EE+R 
Subjt:  NIEELASFADDLVAILKDPTDVRNLNQCLEHFKTLQSSCDDDFTSVQSSLEDYEKKIKACREKTEEAKANTVADDEMEILEKELEEEIGKGHLLMEEIRL

Query:  VTNEINELECRRVSVQERKQAMKKLEQQELWAQRKLSMYASVTDIIPNMEDQSKISGHIVDRNKRVVQKFEFDPAKISS-FDTCN
                       +E + A+K+ ++ +L  + KL MYASVT +IPN++D  K SG++V R+KR++ KFEFD  K +S ++TCN
Subjt:  VTNEINELECRRVSVQERKQAMKKLEQQELWAQRKLSMYASVTDIIPNMEDQSKISGHIVDRNKRVVQKFEFDPAKISS-FDTCN

Sequences

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CDS sequence

Show/hide CDS sequence

ATGGGAGATTTCGCCACAAATTCCAACATTGAGGAGCTCGCATCTTTTGCCGACGATTTGGTAGCAATCTTAAAGGACCCAACTGACGTTCGTAACTTGAATCAATGTCT
TGAACATTTCAAGACTCTTCAATCTTCTTGTGACGATGATTTCACTAGTGTTCAAAGCTCACTTGAAGATTATGAGAAGAAAATTAAAGCATGCCGGGAGAAAACAGAAG
AGGCCAAAGCGAACACTGTTGCAGATGATGAAATGGAGATTCTAGAAAAGGAACTCGAAGAGGAGATTGGGAAAGGGCATTTGCTTATGGAGGAGATAAGATTGGTGACC
AATGAGATTAATGAACTTGAATGCCGAAGGGTTTCTGTTCAAGAAAGGAAGCAAGCGATGAAGAAACTTGAGCAACAAGAACTTTGGGCTCAGAGGAAGCTTTCAATGTA
TGCTTCAGTTACTGATATTATACCAAACATGGAAGATCAGTCTAAAATTTCTGGCCATATTGTGGACAGAAATAAACGAGTTGTCCAAAAGTTTGAATTCGACCCAGCTA
AGATATCTTCTTTTGACACATGCAATGGCCTTTGGAATATGATTAATTCCCCATAG

mRNA sequence

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Protein sequence

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MGDFATNSNIEELASFADDLVAILKDPTDVRNLNQCLEHFKTLQSSCDDDFTSVQSSLEDYEKKIKACREKTEEAKANTVADDEMEILEKELEEEIGKGHLLMEEIRLVT
NEINELECRRVSVQERKQAMKKLEQQELWAQRKLSMYASVTDIIPNMEDQSKISGHIVDRNKRVVQKFEFDPAKISSFDTCNGLWNMINSP

Cucsat.G13887 (gene) of Cucumber (B10) v3 genome