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Cucsat.G13939 (gene) of Cucumber (B10) v3 genome

Gene IDCucsat.G13939
OrganismCucumis sativus L. var. sativus cv. B10 (Cucumber (B10) v3)
Description39S ribosomal protein L47, mitochondrial
Genome locationctg1869:247918..251652
RNA-Seq ExpressionCucsat.G13939
SyntenyCucsat.G13939
Gene Ontology termsGO:0032543 - mitochondrial translation (biological process)
GO:0005762 - mitochondrial large ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR010729 - Ribosomal protein L47, mitochondrial
IPR038340 - MRP-L47 superfamily, mitochondrial


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004138121.1 39S ribosomal protein L47, mitochondrial [Cucumis sativus]1.19e-69100Show/hide
Query:  MFLTRVFGRTFLAAARSETSSATAAAAATARTGYNPLEEFFEADRSPDDGKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLKF
        MFLTRVFGRTFLAAARSETSSATAAAAATARTGYNPLEEFFEADRSPDDGKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLKF
Subjt:  MFLTRVFGRTFLAAARSETSSATAAAAATARTGYNPLEEFFEADRSPDDGKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLKF

Query:  PNPERIPKV
        PNPERIPKV
Subjt:  PNPERIPKV
XP_008453113.1 PREDICTED: 39S ribosomal protein L47, mitochondrial [Cucumis melo]5.61e-6898.17Show/hide
Query:  MFLTRVFGRTFLAAARSETSSATAAAAATARTGYNPLEEFFEADRSPDDGKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLKF
        MFLTRVFGRTFLAAARSETSSATAAAAATARTGYNPLEEFFEADRSPDDGKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNL+F
Subjt:  MFLTRVFGRTFLAAARSETSSATAAAAATARTGYNPLEEFFEADRSPDDGKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLKF

Query:  PNPERIPKV
        PNPERI KV
Subjt:  PNPERIPKV
XP_022968794.1 39S ribosomal protein L47, mitochondrial-like [Cucurbita maxima]1.78e-6492.66Show/hide
Query:  MFLTRVFGRTFLAAARSETSSATAAAAATARTGYNPLEEFFEADRSPDDGKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLKF
        M LTR+FGRTFLAAARSETS+ATAAA +TARTGYNPLEEFFEA RSPDD KPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNL+F
Subjt:  MFLTRVFGRTFLAAARSETSSATAAAAATARTGYNPLEEFFEADRSPDDGKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLKF

Query:  PNPERIPKV
        PNPERIPKV
Subjt:  PNPERIPKV
XP_023530690.1 39S ribosomal protein L47, mitochondrial-like [Cucurbita pepo subsp. pepo]2.07e-6390.83Show/hide
Query:  MFLTRVFGRTFLAAARSETSSATAAAAATARTGYNPLEEFFEADRSPDDGKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLKF
        MFLTR+FGRTFLAAARSE S+ATAAA +TARTGYNPLEEFFE  RSP+D KPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNL+F
Subjt:  MFLTRVFGRTFLAAARSETSSATAAAAATARTGYNPLEEFFEADRSPDDGKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLKF

Query:  PNPERIPKV
        PNPERIPKV
Subjt:  PNPERIPKV
XP_038879389.1 39S ribosomal protein L47, mitochondrial [Benincasa hispida]1.32e-6696.33Show/hide
Query:  MFLTRVFGRTFLAAARSETSSATAAAAATARTGYNPLEEFFEADRSPDDGKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLKF
        MFLTRVFGRTFLAAARSETSSAT AAAATAR GYNPLEEFFEADRSPDD KPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNL+F
Subjt:  MFLTRVFGRTFLAAARSETSSATAAAAATARTGYNPLEEFFEADRSPDDGKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLKF

Query:  PNPERIPKV
        PNPERIPKV
Subjt:  PNPERIPKV
TrEMBL top hitse value%identityAlignment
A0A0A0LS48 Uncharacterized protein5.74e-70100Show/hide
Query:  MFLTRVFGRTFLAAARSETSSATAAAAATARTGYNPLEEFFEADRSPDDGKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLKF
        MFLTRVFGRTFLAAARSETSSATAAAAATARTGYNPLEEFFEADRSPDDGKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLKF
Subjt:  MFLTRVFGRTFLAAARSETSSATAAAAATARTGYNPLEEFFEADRSPDDGKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLKF

Query:  PNPERIPKV
        PNPERIPKV
Subjt:  PNPERIPKV
A0A1S3BWK4 39S ribosomal protein L47, mitochondrial2.72e-6898.17Show/hide
Query:  MFLTRVFGRTFLAAARSETSSATAAAAATARTGYNPLEEFFEADRSPDDGKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLKF
        MFLTRVFGRTFLAAARSETSSATAAAAATARTGYNPLEEFFEADRSPDDGKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNL+F
Subjt:  MFLTRVFGRTFLAAARSETSSATAAAAATARTGYNPLEEFFEADRSPDDGKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLKF

Query:  PNPERIPKV
        PNPERI KV
Subjt:  PNPERIPKV
A0A6J1C2P6 39S ribosomal protein L47, mitochondrial9.26e-6292.66Show/hide
Query:  MFLTRVFGRTFLAAARSETSSATAAAAATARTGYNPLEEFFEADRSPDDGKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLKF
        MFLTRVFGRT LAAARSETSSA AAAA+T RTGYNPLEEFFEADRSPDD KPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQML+AQNL+F
Subjt:  MFLTRVFGRTFLAAARSETSSATAAAAATARTGYNPLEEFFEADRSPDDGKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLKF

Query:  PNPERIPKV
         NPERIPKV
Subjt:  PNPERIPKV
A0A6J1I0P6 39S ribosomal protein L47, mitochondrial-like8.63e-6592.66Show/hide
Query:  MFLTRVFGRTFLAAARSETSSATAAAAATARTGYNPLEEFFEADRSPDDGKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLKF
        M LTR+FGRTFLAAARSETS+ATAAA +TARTGYNPLEEFFEA RSPDD KPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNL+F
Subjt:  MFLTRVFGRTFLAAARSETSSATAAAAATARTGYNPLEEFFEADRSPDDGKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLKF

Query:  PNPERIPKV
        PNPERIPKV
Subjt:  PNPERIPKV
A0A6J1JCZ2 39S ribosomal protein L47, mitochondrial7.96e-6393.58Show/hide
Query:  MFLTRVFGRTFLAAARSETSSATAAAAATARTGYNPLEEFFEADRSPDDGKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLKF
        MFLTRV GR FLAAARSETSSA AAAA+TA TGYNPLEEFFEADRSPDD KPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNL+F
Subjt:  MFLTRVFGRTFLAAARSETSSATAAAAATARTGYNPLEEFFEADRSPDDGKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLKF

Query:  PNPERIPKV
        PNPERIPKV
Subjt:  PNPERIPKV
SwissProt top hitse value%identityAlignment
P87232 54S ribosomal protein L4, mitochondrial1.3e-0742.65Show/hide
Query:  NPLEEFFEADRS-PDDGKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLKFP
        +PL  FF   ++ P   +   +GR+W A ELR KS++DL+ LWY  L+EKN+L TQR  +    L  P
Subjt:  NPLEEFFEADRS-PDDGKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLKFP
Q08DT6 39S ribosomal protein L47, mitochondrial6.7e-1252.05Show/hide
Query:  LEEFFEADRSPDDGKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLKFPNPERIPKV
        LEEFF+  ++  + K V  G SW   +LR KS +DL+KLWYVLLKE+NML+T  Q    Q L  P+PER+ KV
Subjt:  LEEFFEADRSPDDGKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLKFPNPERIPKV
Q2H080 54S ribosomal protein L4, mitochondrial3.8e-0742.86Show/hide
Query:  LEEFFEADRSPDDGKPVV--YGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLKFPNPE
        L EFF+      +  P +  +GRSW A ELR KSWDDL++LW+V  KE+N + T     N   L F   E
Subjt:  LEEFFEADRSPDDGKPVV--YGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLKFPNPE
Q8K2Y7 39S ribosomal protein L47, mitochondrial3.9e-1250Show/hide
Query:  LEEFFEADRSPDDGKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLKFPNPERIPKVEVDTDLV
        LEEFF+  ++  + K V  G SW   +LR KS +DL+KLWYVLLKE+NML+T  Q    Q L  P+PER+ KV    D V
Subjt:  LEEFFEADRSPDDGKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLKFPNPERIPKVEVDTDLV
Q9HD33 39S ribosomal protein L47, mitochondrial2.6e-1150.68Show/hide
Query:  LEEFFEADRSPDDGKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLKFPNPERIPKV
        LEEFF+  ++    K V  G +W   +LR KS +DL+KLWYVLLKE+NML+T  Q    Q L  P+PER+ KV
Subjt:  LEEFFEADRSPDDGKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLKFPNPERIPKV
Arabidopsis top hitse value%identityAlignment
AT1G07830.1 ribosomal protein L29 family protein8.4e-4280Show/hide
Query:  MFLTRVFGRTFLAAARSETSSATAAAAA-TARTGYNPLEEFFEADRSPDDGKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLK
        MFLTR  GR FLAAA + + S TAAAAA T RT  NPLEEFFE DRS D+ KPVVYGR WKASELRLKSWDDL KLWYVLLKEKNMLMTQRQML AQN++
Subjt:  MFLTRVFGRTFLAAARSETSSATAAAAA-TARTGYNPLEEFFEADRSPDDGKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLK

Query:  FPNPERIPKV
        FPNPERIPKV
Subjt:  FPNPERIPKV

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTTTTGACACGAGTGTTTGGGAGAACATTTCTAGCTGCTGCTAGATCAGAAACTTCTTCTGCCACAGCTGCTGCTGCTGCCACAGCTAGGACGGGCTATAACCCGCT
TGAGGAGTTTTTCGAGGCAGATAGAAGTCCAGATGATGGCAAACCTGTTGTATATGGTCGAAGTTGGAAGGCTTCGGAACTACGGCTCAAGTCTTGGGACGATCTTAATA
AACTATGGTATGTTCTTTTGAAGGAGAAGAATATGTTGATGACACAACGCCAGATGCTGAATGCACAAAATCTAAAGTTTCCTAATCCAGAACGCATTCCCAAGGTAGAA
GTAGACACAGATTTAGTATTATTTTCAAATTGTAAATATAAGTTCAATTTGCTTTCTCTTTTATATTGGATCTGTTTCCTTCTCCTCCTTCAGTCGTGTAATCTTAAGCC
TGACAATGGCTCTCCTTCCACTACTTTTCTATTCTAA
mRNA sequenceShow/hide mRNA sequence
ATGTTTTTGACACGAGTGTTTGGGAGAACATTTCTAGCTGCTGCTAGATCAGAAACTTCTTCTGCCACAGCTGCTGCTGCTGCCACAGCTAGGACGGGCTATAACCCGCT
TGAGGAGTTTTTCGAGGCAGATAGAAGTCCAGATGATGGCAAACCTGTTGTATATGGTCGAAGTTGGAAGGCTTCGGAACTACGGCTCAAGTCTTGGGACGATCTTAATA
AACTATGGTATGTTCTTTTGAAGGAGAAGAATATGTTGATGACACAACGCCAGATGCTGAATGCACAAAATCTAAAGTTTCCTAATCCAGAACGCATTCCCAAGGTAGAA
GTAGACACAGATTTAGTATTATTTTCAAATTGTAAATATAAGTTCAATTTGCTTTCTCTTTTATATTGGATCTGTTTCCTTCTCCTCCTTCAGTCGTGTAATCTTAAGCC
TGACAATGGCTCTCCTTCCACTACTTTTCTATTCTAA
Protein sequenceShow/hide protein sequence
MFLTRVFGRTFLAAARSETSSATAAAAATARTGYNPLEEFFEADRSPDDGKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLKFPNPERIPKVE
VDTDLVLFSNCKYKFNLLSLLYWICFLLLLQSCNLKPDNGSPSTTFLF