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Cucsat.G14024 (gene) of Cucumber (B10) v3 genome

Gene IDCucsat.G14024
OrganismCucumis sativus L. var. sativus cv. B10 (Cucumber (B10) v3)
Description40S ribosomal protein S28
Genome locationctg1869:1442792..1447845
RNA-Seq ExpressionCucsat.G14024
SyntenyCucsat.G14024
Gene Ontology termsGO:0000028 - ribosomal small subunit assembly (biological process)
GO:0006412 - translation (biological process)
GO:0030490 - maturation of SSU-rRNA (biological process)
GO:0022627 - cytosolic small ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8124855.1 hypothetical protein FH972_019702 [Carpinus fangiana]3.52e-2592.45Show/hide
Query:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREAFILN
        MESQ+KHAVVVKVMGRTGSRGQVTQVRVKFLDDQNR+IMRNVKGPVRE  ILN
Subjt:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREAFILN

PSS07843.1 40S ribosomal protein [Actinidia chinensis var. chinensis]7.10e-2594.23Show/hide
Query:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREAFIL
        MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVRE  +L
Subjt:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREAFIL

PSS13767.1 40S ribosomal protein [Actinidia chinensis var. chinensis]1.01e-2492.31Show/hide
Query:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREAFIL
        MESQIKHA+VVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVRE  +L
Subjt:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREAFIL

XP_008453374.1 PREDICTED: 40S ribosomal protein S28-1 [Cucumis melo]5.00e-2596.15Show/hide
Query:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREAFIL
        MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVRE  IL
Subjt:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREAFIL

XP_023517148.1 40S ribosomal protein S28-1 [Cucurbita pepo subsp. pepo]1.01e-2494.23Show/hide
Query:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREAFIL
        MESQIKHAVVVKVMGRTGSRGQVTQVRVKF+DDQNRYIMRNVKGPVRE  IL
Subjt:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREAFIL

TrEMBL top hitse value%identityAlignment
A0A0A0LPR2 Uncharacterized protein2.42e-2596.15Show/hide
Query:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREAFIL
        MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVRE  IL
Subjt:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREAFIL

A0A1S3CD61 40S ribosomal protein S28-12.42e-2596.15Show/hide
Query:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREAFIL
        MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVRE  IL
Subjt:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREAFIL

A0A5N6RR94 Uncharacterized protein1.71e-2592.45Show/hide
Query:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREAFILN
        MESQ+KHAVVVKVMGRTGSRGQVTQVRVKFLDDQNR+IMRNVKGPVRE  ILN
Subjt:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREAFILN

A0A6J1E1S7 40S ribosomal protein S28-12.42e-2596.15Show/hide
Query:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREAFIL
        MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVRE  IL
Subjt:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREAFIL

A0A6J1HTG7 40S ribosomal protein S28-12.42e-2596.15Show/hide
Query:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREAFIL
        MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVRE  IL
Subjt:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREAFIL

SwissProt top hitse value%identityAlignment
P34789 40S ribosomal protein S28-21.9e-1582.69Show/hide
Query:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREAFIL
        M+SQIKHAVVVKVMGRTGSRGQVTQVRVKF  D +R+IMRNVKGPVRE  +L
Subjt:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREAFIL

P46302 40S ribosomal protein S282.9e-1684.62Show/hide
Query:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREAFIL
        M++Q+K AVVVKVMGRTGSRGQVTQVRVKFLDDQNR IMRNVKGPV E  IL
Subjt:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREAFIL

Q6PBK3 40S ribosomal protein S283.7e-1170.83Show/hide
Query:  IKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREAFIL
        IK A V KV+GRTGS+GQ TQVRV+F+DD NR I+RNVKGPVRE  +L
Subjt:  IKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREAFIL

Q90YP3 40S ribosomal protein S283.7e-1170.83Show/hide
Query:  IKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREAFIL
        IK A V KV+GRTGS+GQ TQVRV+F+DD NR I+RNVKGPVRE  +L
Subjt:  IKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREAFIL

Q9SR73 40S ribosomal protein S28-15.0e-1686.54Show/hide
Query:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREAFIL
        M+SQIKHAVVVKVMGRTGSRGQVTQVRVKF  D +RYIMRNVKGPVRE  IL
Subjt:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREAFIL

Arabidopsis top hitse value%identityAlignment
AT3G10090.1 Nucleic acid-binding, OB-fold-like protein3.5e-1786.54Show/hide
Query:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREAFIL
        M+SQIKHAVVVKVMGRTGSRGQVTQVRVKF  D +RYIMRNVKGPVRE  IL
Subjt:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREAFIL

AT5G03850.1 Nucleic acid-binding, OB-fold-like protein3.5e-1786.54Show/hide
Query:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREAFIL
        M+SQIKHAVVVKVMGRTGSRGQVTQVRVKF  D +RYIMRNVKGPVRE  IL
Subjt:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREAFIL

AT5G64140.1 ribosomal protein S281.3e-1682.69Show/hide
Query:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREAFIL
        M+SQIKHAVVVKVMGRTGSRGQVTQVRVKF  D +R+IMRNVKGPVRE  +L
Subjt:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREAFIL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAATCTCAAATCAAGCATGCTGTTGTGGTCAAAGTAATGGGTAGAACTGGATCTAGAGGTCAAGTGACTCAAGTGAGAGTTAAGTTTCTTGATGATCAAAATCGTTA
CATTATGAGGAATGTCAAGGGACCAGTGAGGGAAGCCTTCATATTAAATTACCAGAAAGCCCTTACACTTGAGTTCTCCATAGAGGGGTATATTCGTCTTCATCCACAAT
CAGAAACCCTAGTTATTGTGCCCAAAGTATTTCCTTTCCCCCCCCCCTTCCATTTGTGTTGCCGGCGGCGTGTCTTCAAATTCTACTGA
mRNA sequenceShow/hide mRNA sequence
ATGGAATCTCAAATCAAGCATGCTGTTGTGGTCAAAGTAATGGGTAGAACTGGATCTAGAGGTCAAGTGACTCAAGTGAGAGTTAAGTTTCTTGATGATCAAAATCGTTA
CATTATGAGGAATGTCAAGGGACCAGTGAGGGAAGCCTTCATATTAAATTACCAGAAAGCCCTTACACTTGAGTTCTCCATAGAGGGGTATATTCGTCTTCATCCACAAT
CAGAAACCCTAGTTATTGTGCCCAAAGTATTTCCTTTCCCCCCCCCCTTCCATTTGTGTTGCCGGCGGCGTGTCTTCAAATTCTACTGA
Protein sequenceShow/hide protein sequence
MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREAFILNYQKALTLEFSIEGYIRLHPQSETLVIVPKVFPFPPPFHLCCRRRVFKFY