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Cucsat.G1470 (gene) of Cucumber (B10) v3 genome

Gene IDCucsat.G1470
OrganismCucumis sativus L. var. sativus cv. B10 (Cucumber (B10) v3)
DescriptionPentatricopeptide repeat-containing protein
Genome locationctg10:156210..157019
RNA-Seq ExpressionCucsat.G1470
SyntenyCucsat.G1470
Gene Ontology termsGO:0019252 - starch biosynthetic process (biological process)
GO:0009507 - chloroplast (cellular component)
GO:0005515 - protein binding (molecular function)
GO:0016757 - transferase activity, transferring glycosyl groups (molecular function)
InterPro domainsIPR002885 - Pentatricopeptide repeat
IPR011990 - Tetratricopeptide-like helical domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004140638.1 pentatricopeptide repeat-containing protein At1g05600 isoform X1 [Cucumis sativus]3.07e-64100Show/hide
Query:  MINILGNSGRVSEMREVMDQMRDDSCECKDSVFSFAIKTYASHGLLEDGISLFKSFGRFNCTNRTQTFNTLLEILLKESQLHAACQLFQECSYGWGVKSR
        MINILGNSGRVSEMREVMDQMRDDSCECKDSVFSFAIKTYASHGLLEDGISLFKSFGRFNCTNRTQTFNTLLEILLKESQLHAACQLFQECSYGWGVKSR
Subjt:  MINILGNSGRVSEMREVMDQMRDDSCECKDSVFSFAIKTYASHGLLEDGISLFKSFGRFNCTNRTQTFNTLLEILLKESQLHAACQLFQECSYGWGVKSR

Query:  TQS
        TQS
Subjt:  TQS
XP_008459832.1 PREDICTED: pentatricopeptide repeat-containing protein At1g05600 isoform X2 [Cucumis melo]6.61e-6297.09Show/hide
Query:  MINILGNSGRVSEMREVMDQMRDDSCECKDSVFSFAIKTYASHGLLEDGISLFKSFGRFNCTNRTQTFNTLLEILLKESQLHAACQLFQECSYGWGVKSR
        MINILGNSGRVSEMREVMDQMRDDSCECKDSVFSFAIKTYASHGLLEDGISLFKS GRFNCTNRTQTFNTLLEILL ESQLHAACQLFQECSYGW VKSR
Subjt:  MINILGNSGRVSEMREVMDQMRDDSCECKDSVFSFAIKTYASHGLLEDGISLFKSFGRFNCTNRTQTFNTLLEILLKESQLHAACQLFQECSYGWGVKSR

Query:  TQS
        TQS
Subjt:  TQS
XP_011656819.1 pentatricopeptide repeat-containing protein At1g05600 isoform X2 [Cucumis sativus]9.52e-65100Show/hide
Query:  MINILGNSGRVSEMREVMDQMRDDSCECKDSVFSFAIKTYASHGLLEDGISLFKSFGRFNCTNRTQTFNTLLEILLKESQLHAACQLFQECSYGWGVKSR
        MINILGNSGRVSEMREVMDQMRDDSCECKDSVFSFAIKTYASHGLLEDGISLFKSFGRFNCTNRTQTFNTLLEILLKESQLHAACQLFQECSYGWGVKSR
Subjt:  MINILGNSGRVSEMREVMDQMRDDSCECKDSVFSFAIKTYASHGLLEDGISLFKSFGRFNCTNRTQTFNTLLEILLKESQLHAACQLFQECSYGWGVKSR

Query:  TQS
        TQS
Subjt:  TQS
XP_016902498.1 PREDICTED: pentatricopeptide repeat-containing protein At1g05600 isoform X1 [Cucumis melo]2.06e-6197.09Show/hide
Query:  MINILGNSGRVSEMREVMDQMRDDSCECKDSVFSFAIKTYASHGLLEDGISLFKSFGRFNCTNRTQTFNTLLEILLKESQLHAACQLFQECSYGWGVKSR
        MINILGNSGRVSEMREVMDQMRDDSCECKDSVFSFAIKTYASHGLLEDGISLFKS GRFNCTNRTQTFNTLLEILL ESQLHAACQLFQECSYGW VKSR
Subjt:  MINILGNSGRVSEMREVMDQMRDDSCECKDSVFSFAIKTYASHGLLEDGISLFKSFGRFNCTNRTQTFNTLLEILLKESQLHAACQLFQECSYGWGVKSR

Query:  TQS
        TQS
Subjt:  TQS
XP_038874865.1 pentatricopeptide repeat-containing protein At1g05600 [Benincasa hispida]1.18e-5691.26Show/hide
Query:  MINILGNSGRVSEMREVMDQMRDDSCECKDSVFSFAIKTYASHGLLEDGISLFKSFGRFNCTNRTQTFNTLLEILLKESQLHAACQLFQECSYGWGVKSR
        MI+ILGNSGRVSEMREV+DQMRDDSCECKDSVFSFAIKTYASHGLLEDGI+LFKS G+FNCTNRTQTFNTLLEILL ESQL AACQLFQE SYGW VKSR
Subjt:  MINILGNSGRVSEMREVMDQMRDDSCECKDSVFSFAIKTYASHGLLEDGISLFKSFGRFNCTNRTQTFNTLLEILLKESQLHAACQLFQECSYGWGVKSR

Query:  TQS
        TQS
Subjt:  TQS
TrEMBL top hitse value%identityAlignment
A0A0A0K9Q4 Uncharacterized protein1.49e-64100Show/hide
Query:  MINILGNSGRVSEMREVMDQMRDDSCECKDSVFSFAIKTYASHGLLEDGISLFKSFGRFNCTNRTQTFNTLLEILLKESQLHAACQLFQECSYGWGVKSR
        MINILGNSGRVSEMREVMDQMRDDSCECKDSVFSFAIKTYASHGLLEDGISLFKSFGRFNCTNRTQTFNTLLEILLKESQLHAACQLFQECSYGWGVKSR
Subjt:  MINILGNSGRVSEMREVMDQMRDDSCECKDSVFSFAIKTYASHGLLEDGISLFKSFGRFNCTNRTQTFNTLLEILLKESQLHAACQLFQECSYGWGVKSR

Query:  TQS
        TQS
Subjt:  TQS
A0A1S3CB38 pentatricopeptide repeat-containing protein At1g05600 isoform X23.20e-6297.09Show/hide
Query:  MINILGNSGRVSEMREVMDQMRDDSCECKDSVFSFAIKTYASHGLLEDGISLFKSFGRFNCTNRTQTFNTLLEILLKESQLHAACQLFQECSYGWGVKSR
        MINILGNSGRVSEMREVMDQMRDDSCECKDSVFSFAIKTYASHGLLEDGISLFKS GRFNCTNRTQTFNTLLEILL ESQLHAACQLFQECSYGW VKSR
Subjt:  MINILGNSGRVSEMREVMDQMRDDSCECKDSVFSFAIKTYASHGLLEDGISLFKSFGRFNCTNRTQTFNTLLEILLKESQLHAACQLFQECSYGWGVKSR

Query:  TQS
        TQS
Subjt:  TQS
A0A1S4E2N8 pentatricopeptide repeat-containing protein At1g05600 isoform X19.99e-6297.09Show/hide
Query:  MINILGNSGRVSEMREVMDQMRDDSCECKDSVFSFAIKTYASHGLLEDGISLFKSFGRFNCTNRTQTFNTLLEILLKESQLHAACQLFQECSYGWGVKSR
        MINILGNSGRVSEMREVMDQMRDDSCECKDSVFSFAIKTYASHGLLEDGISLFKS GRFNCTNRTQTFNTLLEILL ESQLHAACQLFQECSYGW VKSR
Subjt:  MINILGNSGRVSEMREVMDQMRDDSCECKDSVFSFAIKTYASHGLLEDGISLFKSFGRFNCTNRTQTFNTLLEILLKESQLHAACQLFQECSYGWGVKSR

Query:  TQS
        TQS
Subjt:  TQS
A0A5D3DM62 Pentatricopeptide repeat-containing protein9.99e-6297.09Show/hide
Query:  MINILGNSGRVSEMREVMDQMRDDSCECKDSVFSFAIKTYASHGLLEDGISLFKSFGRFNCTNRTQTFNTLLEILLKESQLHAACQLFQECSYGWGVKSR
        MINILGNSGRVSEMREVMDQMRDDSCECKDSVFSFAIKTYASHGLLEDGISLFKS GRFNCTNRTQTFNTLLEILL ESQLHAACQLFQECSYGW VKSR
Subjt:  MINILGNSGRVSEMREVMDQMRDDSCECKDSVFSFAIKTYASHGLLEDGISLFKSFGRFNCTNRTQTFNTLLEILLKESQLHAACQLFQECSYGWGVKSR

Query:  TQS
        TQS
Subjt:  TQS
A0A6J1DVG7 pentatricopeptide repeat-containing protein At1g056009.84e-5689.32Show/hide
Query:  MINILGNSGRVSEMREVMDQMRDDSCECKDSVFSFAIKTYASHGLLEDGISLFKSFGRFNCTNRTQTFNTLLEILLKESQLHAACQLFQECSYGWGVKSR
        MI+ILGNSGRV EMREV+DQM+DDSCECKDSVFSFAIKTYASHGLLE+GISLFKS GRFNCTNRTQTFNTLLEILL ES+L AACQLFQ+ SYGWGVKSR
Subjt:  MINILGNSGRVSEMREVMDQMRDDSCECKDSVFSFAIKTYASHGLLEDGISLFKSFGRFNCTNRTQTFNTLLEILLKESQLHAACQLFQECSYGWGVKSR

Query:  TQS
        TQS
Subjt:  TQS
SwissProt top hitse value%identityAlignment
O81908 Pentatricopeptide repeat-containing protein At1g02060, chloroplastic3.0e-0529Show/hide
Query:  MINILGNSGRVSEMREVM--DQMRDDSC-ECKDSVFSFAIKTYASHGLLEDGISLFKSFGRFNCTNRTQTFNTLLEILLKESQLHAACQLFQECSYGWGV
        M+  LG +  ++  R  +   + R + C + +D  F+  I++Y + GL ++ + LF++  +   +    TFN+LL ILLK  +   A  LF E    +GV
Subjt:  MINILGNSGRVSEMREVM--DQMRDDSC-ECKDSVFSFAIKTYASHGLLEDGISLFKSFGRFNCTNRTQTFNTLLEILLKESQLHAACQLFQECSYGWGV
Q9LQQ1 Pentatricopeptide repeat-containing protein At1g07740, mitochondrial7.5e-0425Show/hide
Query:  MINILGNSGRVSEMREVMDQMRDDSCECKDSVFSFAIKTYASHGLLEDGISLFKSFGRFNCTNRTQTFNTLLEILLKESQLHAACQLF
        +I  L  S     + +++  +R  +  C++S+F   I+ Y   G ++  I +F     F+C    Q+ NTL+ +L+   +L  A   F
Subjt:  MINILGNSGRVSEMREVMDQMRDDSCECKDSVFSFAIKTYASHGLLEDGISLFKSFGRFNCTNRTQTFNTLLEILLKESQLHAACQLF
Q9M8W9 Pentatricopeptide repeat-containing protein At3g04130, mitochondrial4.4e-0427.71Show/hide
Query:  INILGNSGRVSEMREVMDQMRDDSCECKDSVFSFAIKTYASHGLLEDGISLFKSFGRFNCTNRTQTFNTLLEILLKESQLHAA
        ++ILG + +   M+E +++MR D     ++V    ++ +A  G  E+ + +F   G F     T++ N LL+ L KE ++  A
Subjt:  INILGNSGRVSEMREVMDQMRDDSCECKDSVFSFAIKTYASHGLLEDGISLFKSFGRFNCTNRTQTFNTLLEILLKESQLHAA
Q9SYK1 Pentatricopeptide repeat-containing protein At1g056001.4e-2656Show/hide
Query:  MINILGNSGRVSEMREVMDQMRDDSCECKDSVFSFAIKTYASHGLLEDGISLFKSFGRFNCTNRTQTFNTLLEILLKESQLHAACQLFQECSYGWGVKSR
        MI+ILG S RV EM+ V+++M++DSCECKDSVF+  I+T++  G LED ISLFKS   FNC N + +F+TLL+ ++KES+L AAC +F++  YGW V SR
Subjt:  MINILGNSGRVSEMREVMDQMRDDSCECKDSVFSFAIKTYASHGLLEDGISLFKSFGRFNCTNRTQTFNTLLEILLKESQLHAACQLFQECSYGWGVKSR
Arabidopsis top hitse value%identityAlignment
AT1G02060.1 Tetratricopeptide repeat (TPR)-like superfamily protein2.2e-0629Show/hide
Query:  MINILGNSGRVSEMREVM--DQMRDDSC-ECKDSVFSFAIKTYASHGLLEDGISLFKSFGRFNCTNRTQTFNTLLEILLKESQLHAACQLFQECSYGWGV
        M+  LG +  ++  R  +   + R + C + +D  F+  I++Y + GL ++ + LF++  +   +    TFN+LL ILLK  +   A  LF E    +GV
Subjt:  MINILGNSGRVSEMREVM--DQMRDDSC-ECKDSVFSFAIKTYASHGLLEDGISLFKSFGRFNCTNRTQTFNTLLEILLKESQLHAACQLFQECSYGWGV
AT1G05600.1 Tetratricopeptide repeat (TPR)-like superfamily protein1.0e-2756Show/hide
Query:  MINILGNSGRVSEMREVMDQMRDDSCECKDSVFSFAIKTYASHGLLEDGISLFKSFGRFNCTNRTQTFNTLLEILLKESQLHAACQLFQECSYGWGVKSR
        MI+ILG S RV EM+ V+++M++DSCECKDSVF+  I+T++  G LED ISLFKS   FNC N + +F+TLL+ ++KES+L AAC +F++  YGW V SR
Subjt:  MINILGNSGRVSEMREVMDQMRDDSCECKDSVFSFAIKTYASHGLLEDGISLFKSFGRFNCTNRTQTFNTLLEILLKESQLHAACQLFQECSYGWGVKSR
AT1G05600.2 Tetratricopeptide repeat (TPR)-like superfamily protein1.0e-2756Show/hide
Query:  MINILGNSGRVSEMREVMDQMRDDSCECKDSVFSFAIKTYASHGLLEDGISLFKSFGRFNCTNRTQTFNTLLEILLKESQLHAACQLFQECSYGWGVKSR
        MI+ILG S RV EM+ V+++M++DSCECKDSVF+  I+T++  G LED ISLFKS   FNC N + +F+TLL+ ++KES+L AAC +F++  YGW V SR
Subjt:  MINILGNSGRVSEMREVMDQMRDDSCECKDSVFSFAIKTYASHGLLEDGISLFKSFGRFNCTNRTQTFNTLLEILLKESQLHAACQLFQECSYGWGVKSR
AT3G04130.1 Tetratricopeptide repeat (TPR)-like superfamily protein3.1e-0527.71Show/hide
Query:  INILGNSGRVSEMREVMDQMRDDSCECKDSVFSFAIKTYASHGLLEDGISLFKSFGRFNCTNRTQTFNTLLEILLKESQLHAA
        ++ILG + +   M+E +++MR D     ++V    ++ +A  G  E+ + +F   G F     T++ N LL+ L KE ++  A
Subjt:  INILGNSGRVSEMREVMDQMRDDSCECKDSVFSFAIKTYASHGLLEDGISLFKSFGRFNCTNRTQTFNTLLEILLKESQLHAA
AT3G04130.2 Tetratricopeptide repeat (TPR)-like superfamily protein3.1e-0527.71Show/hide
Query:  INILGNSGRVSEMREVMDQMRDDSCECKDSVFSFAIKTYASHGLLEDGISLFKSFGRFNCTNRTQTFNTLLEILLKESQLHAA
        ++ILG + +   M+E +++MR D     ++V    ++ +A  G  E+ + +F   G F     T++ N LL+ L KE ++  A
Subjt:  INILGNSGRVSEMREVMDQMRDDSCECKDSVFSFAIKTYASHGLLEDGISLFKSFGRFNCTNRTQTFNTLLEILLKESQLHAA

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATCAATATACTCGGAAACTCGGGCAGAGTTTCCGAGATGAGAGAAGTGATGGATCAGATGAGAGATGACTCTTGTGAATGCAAAGATTCTGTATTTTCATTTGCAAT
TAAAACGTATGCTAGTCATGGATTATTGGAAGATGGTATATCTCTTTTTAAAAGTTTTGGGAGATTTAACTGTACCAATAGAACACAAACTTTCAATACTCTTTTAGAAA
TCCTGTTGAAGGAATCTCAGCTTCATGCTGCTTGTCAGCTTTTTCAGGAGTGTTCTTATGGTTGGGGAGTGAAATCCAGGACTCAGTCC
mRNA sequenceShow/hide mRNA sequence
ATGATCAATATACTCGGAAACTCGGGCAGAGTTTCCGAGATGAGAGAAGTGATGGATCAGATGAGAGATGACTCTTGTGAATGCAAAGATTCTGTATTTTCATTTGCAAT
TAAAACGTATGCTAGTCATGGATTATTGGAAGATGGTATATCTCTTTTTAAAAGTTTTGGGAGATTTAACTGTACCAATAGAACACAAACTTTCAATACTCTTTTAGAAA
TCCTGTTGAAGGAATCTCAGCTTCATGCTGCTTGTCAGCTTTTTCAGGAGTGTTCTTATGGTTGGGGAGTGAAATCCAGGACTCAGTCC
Protein sequenceShow/hide protein sequence
MINILGNSGRVSEMREVMDQMRDDSCECKDSVFSFAIKTYASHGLLEDGISLFKSFGRFNCTNRTQTFNTLLEILLKESQLHAACQLFQECSYGWGVKSRTQS