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Cucsat.G1475 (gene) of Cucumber (B10) v3 genome

Gene IDCucsat.G1475
OrganismCucumis sativus L. var. sativus cv. B10 (Cucumber (B10) v3)
DescriptionTy3/gypsy retrotransposon protein
Genome locationctg10:234209..252174
RNA-Seq ExpressionCucsat.G1475
SyntenyCucsat.G1475
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0098869 - cellular oxidant detoxification (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0004601 - peroxidase activity (molecular function)
InterPro domainsIPR001584 - Integrase, catalytic core
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0034981.1 Transposon Tf2-9 polyprotein [Cucumis melo var. makuwa]1.33e-5870.08Show/hide
Query:  YRHFRPLKHPYTAKTVPEIFVKEIVRLHGFSKSIVSDRDKVFRSHFWRKLFRLTNARLNYNTTYHPQTYGQTEVVNRGVENYLRCFCGEKSREWVRWLHV
        Y HF  +KHPYTAK+V ++F KEIVRLHG+ KSIVSDRDK+F SHFW++LF++   +L+ +T YHPQ+ GQTEVVNRG+E YLRCFCGE+ +EWV+WLH 
Subjt:  YRHFRPLKHPYTAKTVPEIFVKEIVRLHGFSKSIVSDRDKVFRSHFWRKLFRLTNARLNYNTTYHPQTYGQTEVVNRGVENYLRCFCGEKSREWVRWLHV

Query:  AEYWYNTTYQRSLGITLFQAVYDRTPP
        AEYWYNTT+QRSLGIT FQAVY R PP
Subjt:  AEYWYNTTYQRSLGITLFQAVYDRTPP
KAA0035492.1 peroxidase 64 [Cucumis melo var. makuwa]3.30e-5970.08Show/hide
Query:  YRHFRPLKHPYTAKTVPEIFVKEIVRLHGFSKSIVSDRDKVFRSHFWRKLFRLTNARLNYNTTYHPQTYGQTEVVNRGVENYLRCFCGEKSREWVRWLHV
        Y HF+ LKHPYTAKTV ++FVKEIVRLHGF KSIVSDRDKVF S FW++LF++   +LN +T YHPQ+ GQTEVVNRGV+ YLRC+CGE+ +EW +WLH 
Subjt:  YRHFRPLKHPYTAKTVPEIFVKEIVRLHGFSKSIVSDRDKVFRSHFWRKLFRLTNARLNYNTTYHPQTYGQTEVVNRGVENYLRCFCGEKSREWVRWLHV

Query:  AEYWYNTTYQRSLGITLFQAVYDRTPP
        A+YWY TTYQRSLG T FQA+Y R PP
Subjt:  AEYWYNTTYQRSLGITLFQAVYDRTPP
KAA0054304.1 tropinone reductase-like 3 [Cucumis melo var. makuwa]1.40e-5869.29Show/hide
Query:  YRHFRPLKHPYTAKTVPEIFVKEIVRLHGFSKSIVSDRDKVFRSHFWRKLFRLTNARLNYNTTYHPQTYGQTEVVNRGVENYLRCFCGEKSREWVRWLHV
        Y HF  LKHPYTAKTV ++F+KE+VRLHG+ KSIVS RDKVF S+FW++LF++ + +LN +T YHPQ+ G+ EVVNRGVE YL CFCGE+ +EW RWLH 
Subjt:  YRHFRPLKHPYTAKTVPEIFVKEIVRLHGFSKSIVSDRDKVFRSHFWRKLFRLTNARLNYNTTYHPQTYGQTEVVNRGVENYLRCFCGEKSREWVRWLHV

Query:  AEYWYNTTYQRSLGITLFQAVYDRTPP
        AEYWYNTT QRSLGIT FQAVY R PP
Subjt:  AEYWYNTTYQRSLGITLFQAVYDRTPP
KAA0056335.1 Retrovirus-related Pol polyprotein from transposon 297 family [Cucumis melo var. makuwa]1.00e-5864.79Show/hide
Query:  DLASMDIFFHLNILYRHFRPLKHPYTAKTVPEIFVKEIVRLHGFSKSIVSDRDKVFRSHFWRKLFRLTNARLNYNTTYHPQTYGQTEVVNRGVENYLRCF
        D   +  + H    Y HF PLKHP+TAK V E+FV+E+VRLHGF  SIVSDRDK+F SHFW +LFRL++ +LN +T YHPQ+ GQTEVVNRGVE YLRCF
Subjt:  DLASMDIFFHLNILYRHFRPLKHPYTAKTVPEIFVKEIVRLHGFSKSIVSDRDKVFRSHFWRKLFRLTNARLNYNTTYHPQTYGQTEVVNRGVENYLRCF

Query:  CGEKSREWVRWLHVAEYWYNTTYQRSLGITLFQAVYDRTPPS
        C EK +EWV+WL +AEYWYNTT+QRS+G+T FQ VY R PP+
Subjt:  CGEKSREWVRWLHVAEYWYNTTYQRSLGITLFQAVYDRTPPS
TYK03262.1 Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa]1.16e-6070.45Show/hide
Query:  LNILYRHFRPLKHPYTAKTVPEIFVKEIVRLHGFSKSIVSDRDKVFRSHFWRKLFRLTNARLNYNTTYHPQTYGQTEVVNRGVENYLRCFCGEKSREWVR
        L+ LY HF PLKHP+TAK V E+FVKE+VRLHGF  SIVSDRDK+F SHFW +LFRL+  +LN +T YHPQ+ GQTEVVNRGVE YLRCFC EK +EWV+
Subjt:  LNILYRHFRPLKHPYTAKTVPEIFVKEIVRLHGFSKSIVSDRDKVFRSHFWRKLFRLTNARLNYNTTYHPQTYGQTEVVNRGVENYLRCFCGEKSREWVR

Query:  WLHVAEYWYNTTYQRSLGITLFQAVYDRTPPS
        WL  AEYWYNTT+QRS+G+T FQ VY R PP+
Subjt:  WLHVAEYWYNTTYQRSLGITLFQAVYDRTPPS
TrEMBL top hitse value%identityAlignment
A0A5A7SW44 Peroxidase 641.60e-5970.08Show/hide
Query:  YRHFRPLKHPYTAKTVPEIFVKEIVRLHGFSKSIVSDRDKVFRSHFWRKLFRLTNARLNYNTTYHPQTYGQTEVVNRGVENYLRCFCGEKSREWVRWLHV
        Y HF+ LKHPYTAKTV ++FVKEIVRLHGF KSIVSDRDKVF S FW++LF++   +LN +T YHPQ+ GQTEVVNRGV+ YLRC+CGE+ +EW +WLH 
Subjt:  YRHFRPLKHPYTAKTVPEIFVKEIVRLHGFSKSIVSDRDKVFRSHFWRKLFRLTNARLNYNTTYHPQTYGQTEVVNRGVENYLRCFCGEKSREWVRWLHV

Query:  AEYWYNTTYQRSLGITLFQAVYDRTPP
        A+YWY TTYQRSLG T FQA+Y R PP
Subjt:  AEYWYNTTYQRSLGITLFQAVYDRTPP
A0A5A7UGM4 Tropinone reductase-like 36.75e-5969.29Show/hide
Query:  YRHFRPLKHPYTAKTVPEIFVKEIVRLHGFSKSIVSDRDKVFRSHFWRKLFRLTNARLNYNTTYHPQTYGQTEVVNRGVENYLRCFCGEKSREWVRWLHV
        Y HF  LKHPYTAKTV ++F+KE+VRLHG+ KSIVS RDKVF S+FW++LF++ + +LN +T YHPQ+ G+ EVVNRGVE YL CFCGE+ +EW RWLH 
Subjt:  YRHFRPLKHPYTAKTVPEIFVKEIVRLHGFSKSIVSDRDKVFRSHFWRKLFRLTNARLNYNTTYHPQTYGQTEVVNRGVENYLRCFCGEKSREWVRWLHV

Query:  AEYWYNTTYQRSLGITLFQAVYDRTPP
        AEYWYNTT QRSLGIT FQAVY R PP
Subjt:  AEYWYNTTYQRSLGITLFQAVYDRTPP
A0A5D3BRN6 Transposon Tf2-9 polyprotein6.42e-5970.08Show/hide
Query:  YRHFRPLKHPYTAKTVPEIFVKEIVRLHGFSKSIVSDRDKVFRSHFWRKLFRLTNARLNYNTTYHPQTYGQTEVVNRGVENYLRCFCGEKSREWVRWLHV
        Y HF  +KHPYTAK+V ++F KEIVRLHG+ KSIVSDRDK+F SHFW++LF++   +L+ +T YHPQ+ GQTEVVNRG+E YLRCFCGE+ +EWV+WLH 
Subjt:  YRHFRPLKHPYTAKTVPEIFVKEIVRLHGFSKSIVSDRDKVFRSHFWRKLFRLTNARLNYNTTYHPQTYGQTEVVNRGVENYLRCFCGEKSREWVRWLHV

Query:  AEYWYNTTYQRSLGITLFQAVYDRTPP
        AEYWYNTT+QRSLGIT FQAVY R PP
Subjt:  AEYWYNTTYQRSLGITLFQAVYDRTPP
A0A5D3BTY0 Retrovirus-related Pol polyprotein from transposon 297 family4.85e-5964.79Show/hide
Query:  DLASMDIFFHLNILYRHFRPLKHPYTAKTVPEIFVKEIVRLHGFSKSIVSDRDKVFRSHFWRKLFRLTNARLNYNTTYHPQTYGQTEVVNRGVENYLRCF
        D   +  + H    Y HF PLKHP+TAK V E+FV+E+VRLHGF  SIVSDRDK+F SHFW +LFRL++ +LN +T YHPQ+ GQTEVVNRGVE YLRCF
Subjt:  DLASMDIFFHLNILYRHFRPLKHPYTAKTVPEIFVKEIVRLHGFSKSIVSDRDKVFRSHFWRKLFRLTNARLNYNTTYHPQTYGQTEVVNRGVENYLRCF

Query:  CGEKSREWVRWLHVAEYWYNTTYQRSLGITLFQAVYDRTPPS
        C EK +EWV+WL +AEYWYNTT+QRS+G+T FQ VY R PP+
Subjt:  CGEKSREWVRWLHVAEYWYNTTYQRSLGITLFQAVYDRTPPS
A0A5D3BWQ4 Transposon Ty3-G Gag-Pol polyprotein5.64e-6170.45Show/hide
Query:  LNILYRHFRPLKHPYTAKTVPEIFVKEIVRLHGFSKSIVSDRDKVFRSHFWRKLFRLTNARLNYNTTYHPQTYGQTEVVNRGVENYLRCFCGEKSREWVR
        L+ LY HF PLKHP+TAK V E+FVKE+VRLHGF  SIVSDRDK+F SHFW +LFRL+  +LN +T YHPQ+ GQTEVVNRGVE YLRCFC EK +EWV+
Subjt:  LNILYRHFRPLKHPYTAKTVPEIFVKEIVRLHGFSKSIVSDRDKVFRSHFWRKLFRLTNARLNYNTTYHPQTYGQTEVVNRGVENYLRCFCGEKSREWVR

Query:  WLHVAEYWYNTTYQRSLGITLFQAVYDRTPPS
        WL  AEYWYNTT+QRS+G+T FQ VY R PP+
Subjt:  WLHVAEYWYNTTYQRSLGITLFQAVYDRTPPS
SwissProt top hitse value%identityAlignment
P10394 Retrovirus-related Pol polyprotein from transposon 4121.7e-0523.68Show/hide
Query:  TAKTVPEIFVKEIVRLHGFSKSIVSDRDKVFRSHFWRKLFRLTNARLNYNTTYHPQTYGQTEVVNRGVENYLRCFCGEKSREWVRWLHVAEYWYNTTYQR
        +AKTV +   +  +  +G  K+ ++D    +++     L +    +   +T +H QT G  E  +R +  Y+R +      +W  WL    Y +NTT   
Subjt:  TAKTVPEIFVKEIVRLHGFSKSIVSDRDKVFRSHFWRKLFRLTNARLNYNTTYHPQTYGQTEVVNRGVENYLRCFCGEKSREWVRWLHVAEYWYNTTYQR

Query:  SLGITLFQAVYDRT
              ++ V+ RT
Subjt:  SLGITLFQAVYDRT
Q87040 Pro-Pol polyprotein5.5e-0427.35Show/hide
Query:  PLKHPYTAKTVPEIFVKEIVRLHGFSKSIVSDRDKVFRSHFWRKLFRLTNARLNYNTTYHPQTYGQTEVVNRGVENYLRCFCGEKSREWVRWLHVAEYWY
        P K P T+ TV  + V   + +    K I SD+   F S  + +  +     L ++T YHPQ+ G+ E  N  ++  L      +  +W   L V +   
Subjt:  PLKHPYTAKTVPEIFVKEIVRLHGFSKSIVSDRDKVFRSHFWRKLFRLTNARLNYNTTYHPQTYGQTEVVNRGVENYLRCFCGEKSREWVRWLHVAEYWY

Query:  NTTYQRSLGITLFQAVY
        N TY   L  T  Q ++
Subjt:  NTTYQRSLGITLFQAVY
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATGGAAAGTCATATTTGTTGTGGTGGATAGATTTAGCAAGTATGGACATTTTCTTCCACTTAAACATCCTTTATAGGCATTTTCGGCCACTTAAACATCCTTACAC
TGCTAAAACGGTGCCTGAAATCTTTGTCAAGGAAATAGTGCGACTGCACGGATTTTCCAAATCCATAGTTTCAGATAGGGATAAGGTATTCCGCAGTCATTTCTGGAGGA
AGTTGTTCAGATTGACAAACGCACGGTTGAATTACAACACGACGTACCATCCTCAAACTTATGGGCAGACGGAAGTGGTGAATCGAGGAGTGGAAAACTATTTGCGATGC
TTCTGTGGAGAGAAATCAAGAGAATGGGTAAGATGGTTGCATGTGGCAGAATATTGGTACAATACTACGTACCAACGTTCATTGGGAATTACCCTTTTTCAAGCTGTTTA
TGACAGGACACCTCCTTCCTTTGGTTTATTATGGAGATTGGTATACACCGAATTCCACATTGGATGA
mRNA sequenceShow/hide mRNA sequence
ATGGATGGAAAGTCATATTTGTTGTGGTGGATAGATTTAGCAAGTATGGACATTTTCTTCCACTTAAACATCCTTTATAGGCATTTTCGGCCACTTAAACATCCTTACAC
TGCTAAAACGGTGCCTGAAATCTTTGTCAAGGAAATAGTGCGACTGCACGGATTTTCCAAATCCATAGTTTCAGATAGGGATAAGGTATTCCGCAGTCATTTCTGGAGGA
AGTTGTTCAGATTGACAAACGCACGGTTGAATTACAACACGACGTACCATCCTCAAACTTATGGGCAGACGGAAGTGGTGAATCGAGGAGTGGAAAACTATTTGCGATGC
TTCTGTGGAGAGAAATCAAGAGAATGGGTAAGATGGTTGCATGTGGCAGAATATTGGTACAATACTACGTACCAACGTTCATTGGGAATTACCCTTTTTCAAGCTGTTTA
TGACAGGACACCTCCTTCCTTTGGTTTATTATGGAGATTGGTATACACCGAATTCCACATTGGATGA
Protein sequenceShow/hide protein sequence
MDGKSYLLWWIDLASMDIFFHLNILYRHFRPLKHPYTAKTVPEIFVKEIVRLHGFSKSIVSDRDKVFRSHFWRKLFRLTNARLNYNTTYHPQTYGQTEVVNRGVENYLRC
FCGEKSREWVRWLHVAEYWYNTTYQRSLGITLFQAVYDRTPPSFGLLWRLVYTEFHIG