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Cucsat.G14821 (gene) of Cucumber (B10) v3 genome

Gene IDCucsat.G14821
OrganismCucumis sativus L. var. sativus cv. B10 (Cucumber (B10) v3)
Description28S ribosomal protein S33, mitochondrial
Genome locationctg1869:5412053..5416480
RNA-Seq ExpressionCucsat.G14821
SyntenyCucsat.G14821
Gene Ontology termsGO:0005739 - mitochondrion (cellular component)
GO:0005840 - ribosome (cellular component)
InterPro domainsIPR013219 - Ribosomal protein S27/S33, mitochondrial


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8652638.1 hypothetical protein Csa_013164 [Cucumis sativus]2.11e-8271.21Show/hide
Query:  MISGRRRRLPPPPILLVSNFQFLSVT---------------------------------------------------------GETFYLKGKPEERMATN
        MISGRRRRLPPPPILLVSNFQFLSVT                                                         GETFYLKGKPEERMATN
Subjt:  MISGRRRRLPPPPILLVSNFQFLSVT---------------------------------------------------------GETFYLKGKPEERMATN

Query:  SLKSMIAAAVNKGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKVSQWYPYDIKKDDPLVMARLEQERLSKLEMLKRRGKGPPKKGQGRRAAKRNK
        SLKSMIAAAVNKGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKVSQWYPYDIKKDDPLVMARLEQERLSKLEMLKRRGKGPPKKGQGRRAAKRNK
Subjt:  SLKSMIAAAVNKGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKVSQWYPYDIKKDDPLVMARLEQERLSKLEMLKRRGKGPPKKGQGRRAAKRNK

KAG7019771.1 RSM27, partial [Cucurbita argyrosperma subsp. argyrosperma]3.99e-6392.59Show/hide
Query:  GKPEERMATNSLKSMIAAAVNKGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKVSQWYPYDIKKDDPLVMARLEQERLSKLEMLKRRGKGPPKKGQG
        GK EERMATNSLK MIAAA+NKGVTEARARIFGH+LNPTGQRSTHKLLRKKLIGDKV++WYPYDIKKDDPL+MAR EQERLSKLEMLKRRGKGPPKKGQG
Subjt:  GKPEERMATNSLKSMIAAAVNKGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKVSQWYPYDIKKDDPLVMARLEQERLSKLEMLKRRGKGPPKKGQG

Query:  RRAAKRNK
        RRAAKRNK
Subjt:  RRAAKRNK

XP_004145134.1 28S ribosomal protein S33, mitochondrial isoform X2 [Cucumis sativus]6.65e-63100Show/hide
Query:  MATNSLKSMIAAAVNKGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKVSQWYPYDIKKDDPLVMARLEQERLSKLEMLKRRGKGPPKKGQGRRAAKR
        MATNSLKSMIAAAVNKGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKVSQWYPYDIKKDDPLVMARLEQERLSKLEMLKRRGKGPPKKGQGRRAAKR
Subjt:  MATNSLKSMIAAAVNKGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKVSQWYPYDIKKDDPLVMARLEQERLSKLEMLKRRGKGPPKKGQGRRAAKR

Query:  NK
        NK
Subjt:  NK

XP_008440305.1 PREDICTED: 28S ribosomal protein S33, mitochondrial [Cucumis melo]1.10e-6198.04Show/hide
Query:  MATNSLKSMIAAAVNKGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKVSQWYPYDIKKDDPLVMARLEQERLSKLEMLKRRGKGPPKKGQGRRAAKR
        MATNSLKSMIAAAV+KGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKV+QWYPYDIKKDDPLVMARLEQERLSKLEMLKRRGKGPPKKGQGRRAAKR
Subjt:  MATNSLKSMIAAAVNKGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKVSQWYPYDIKKDDPLVMARLEQERLSKLEMLKRRGKGPPKKGQGRRAAKR

Query:  NK
        NK
Subjt:  NK

XP_031745997.1 uncharacterized protein LOC101219254 isoform X1 [Cucumis sativus]1.32e-93100Show/hide
Query:  MISGRRRRLPPPPILLVSNFQFLSVTGETFYLKGKPEERMATNSLKSMIAAAVNKGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKVSQWYPYDIKK
        MISGRRRRLPPPPILLVSNFQFLSVTGETFYLKGKPEERMATNSLKSMIAAAVNKGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKVSQWYPYDIKK
Subjt:  MISGRRRRLPPPPILLVSNFQFLSVTGETFYLKGKPEERMATNSLKSMIAAAVNKGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKVSQWYPYDIKK

Query:  DDPLVMARLEQERLSKLEMLKRRGKGPPKKGQGRRAAKRNK
        DDPLVMARLEQERLSKLEMLKRRGKGPPKKGQGRRAAKRNK
Subjt:  DDPLVMARLEQERLSKLEMLKRRGKGPPKKGQGRRAAKRNK

TrEMBL top hitse value%identityAlignment
A0A0A0LRA7 Uncharacterized protein3.22e-63100Show/hide
Query:  MATNSLKSMIAAAVNKGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKVSQWYPYDIKKDDPLVMARLEQERLSKLEMLKRRGKGPPKKGQGRRAAKR
        MATNSLKSMIAAAVNKGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKVSQWYPYDIKKDDPLVMARLEQERLSKLEMLKRRGKGPPKKGQGRRAAKR
Subjt:  MATNSLKSMIAAAVNKGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKVSQWYPYDIKKDDPLVMARLEQERLSKLEMLKRRGKGPPKKGQGRRAAKR

Query:  NK
        NK
Subjt:  NK

A0A1S3B0S3 28S ribosomal protein S33, mitochondrial5.34e-6298.04Show/hide
Query:  MATNSLKSMIAAAVNKGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKVSQWYPYDIKKDDPLVMARLEQERLSKLEMLKRRGKGPPKKGQGRRAAKR
        MATNSLKSMIAAAV+KGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKV+QWYPYDIKKDDPLVMARLEQERLSKLEMLKRRGKGPPKKGQGRRAAKR
Subjt:  MATNSLKSMIAAAVNKGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKVSQWYPYDIKKDDPLVMARLEQERLSKLEMLKRRGKGPPKKGQGRRAAKR

Query:  NK
        NK
Subjt:  NK

A0A5A7UM66 28S ribosomal protein S335.34e-6298.04Show/hide
Query:  MATNSLKSMIAAAVNKGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKVSQWYPYDIKKDDPLVMARLEQERLSKLEMLKRRGKGPPKKGQGRRAAKR
        MATNSLKSMIAAAV+KGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKV+QWYPYDIKKDDPLVMARLEQERLSKLEMLKRRGKGPPKKGQGRRAAKR
Subjt:  MATNSLKSMIAAAVNKGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKVSQWYPYDIKKDDPLVMARLEQERLSKLEMLKRRGKGPPKKGQGRRAAKR

Query:  NK
        NK
Subjt:  NK

A0A6J1C6H4 28S ribosomal protein S33, mitochondrial5.12e-6095.1Show/hide
Query:  MATNSLKSMIAAAVNKGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKVSQWYPYDIKKDDPLVMARLEQERLSKLEMLKRRGKGPPKKGQGRRAAKR
        MATNSLKS+IA AVN GVTEARARIFGH+LNPTGQRSTHKLLRKKLIGDKVSQWYPYDIKKDDPLVMAR EQERLSKLEMLKRRGKGPPKKGQGRRAAKR
Subjt:  MATNSLKSMIAAAVNKGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKVSQWYPYDIKKDDPLVMARLEQERLSKLEMLKRRGKGPPKKGQGRRAAKR

Query:  NK
        NK
Subjt:  NK

A0A6J1KNI8 28S ribosomal protein S33, mitochondrial1.79e-6094.12Show/hide
Query:  MATNSLKSMIAAAVNKGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKVSQWYPYDIKKDDPLVMARLEQERLSKLEMLKRRGKGPPKKGQGRRAAKR
        MATNSLK MIAAAVNKGVTEARARIFGH+LNPTGQRSTHKLLRKKLIGDKV++WYPYDIKKDDPL+MAR EQERLSKLEMLKRRGKGPPKKGQGRRAAKR
Subjt:  MATNSLKSMIAAAVNKGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKVSQWYPYDIKKDDPLVMARLEQERLSKLEMLKRRGKGPPKKGQGRRAAKR

Query:  NK
        NK
Subjt:  NK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT5G44710.1 CONTAINS InterPro DOMAIN/s: Ribosomal protein S27/S33, mitochondrial (InterPro:IPR013219); Has 101 Blast hits to 101 proteins in 55 species: Archae - 0; Bacteria - 0; Metazoa - 8; Fungi - 59; Plants - 26; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).2.4e-4078.43Show/hide
Query:  MATNSLKSMIAAAVNKGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKVSQWYPYDIKKDDPLVMARLEQERLSKLEMLKRRGKGPPKKGQGRRAAKR
        MA+ SLKS+I++AV +GVTEARARIFGH+LNPTGQRS HK+LRKKLIGDKV++WYPYDIK +DP V+AR E+ER+SKLEMLKRR KGPPKKG G+RAAKR
Subjt:  MATNSLKSMIAAAVNKGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKVSQWYPYDIKKDDPLVMARLEQERLSKLEMLKRRGKGPPKKGQGRRAAKR

Query:  NK
        NK
Subjt:  NK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATCTCTGGACGGCGGCGGCGATTACCTCCCCCTCCGATCTTGTTAGTTTCAAACTTTCAGTTTCTCTCTGTCACTGGTGAGACTTTCTATTTGAAGGGAAAGCCAGA
AGAGAGAATGGCTACAAATAGCCTGAAGAGTATGATTGCCGCAGCAGTCAATAAGGGAGTGACAGAAGCAAGGGCAAGGATATTTGGTCACATACTTAACCCAACAGGTC
AACGATCTACCCACAAGCTTCTGCGCAAAAAACTCATTGGTGACAAAGTATCCCAGTGGTATCCATATGACATCAAGAAGGATGATCCTCTTGTCATGGCTCGCCTAGAA
CAAGAGCGCTTGTCCAAGCTTGAAATGCTAAAGCGTCGTGGTAAGGGACCACCTAAGAAGGGCCAAGGCAGGCGTGCGGCCAAGCGCAACAAGTAG
mRNA sequenceShow/hide mRNA sequence
ATGATCTCTGGACGGCGGCGGCGATTACCTCCCCCTCCGATCTTGTTAGTTTCAAACTTTCAGTTTCTCTCTGTCACTGGTGAGACTTTCTATTTGAAGGGAAAGCCAGA
AGAGAGAATGGCTACAAATAGCCTGAAGAGTATGATTGCCGCAGCAGTCAATAAGGGAGTGACAGAAGCAAGGGCAAGGATATTTGGTCACATACTTAACCCAACAGGTC
AACGATCTACCCACAAGCTTCTGCGCAAAAAACTCATTGGTGACAAAGTATCCCAGTGGTATCCATATGACATCAAGAAGGATGATCCTCTTGTCATGGCTCGCCTAGAA
CAAGAGCGCTTGTCCAAGCTTGAAATGCTAAAGCGTCGTGGTAAGGGACCACCTAAGAAGGGCCAAGGCAGGCGTGCGGCCAAGCGCAACAAGTAG
Protein sequenceShow/hide protein sequence
MISGRRRRLPPPPILLVSNFQFLSVTGETFYLKGKPEERMATNSLKSMIAAAVNKGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKVSQWYPYDIKKDDPLVMARLE
QERLSKLEMLKRRGKGPPKKGQGRRAAKRNK