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Cucsat.G14922 (gene) of Cucumber (B10) v3 genome

Gene IDCucsat.G14922
OrganismCucumis sativus L. var. sativus cv. B10 (Cucumber (B10) v3)
DescriptionDNA-directed RNA polymerases I and III subunit RPAC2
Genome locationctg1869:7629215..7631704
RNA-Seq ExpressionCucsat.G14922
SyntenyCucsat.G14922
Gene Ontology termsGO:0006351 - transcription, DNA-templated (biological process)
GO:0005666 - RNA polymerase III complex (cellular component)
GO:0005736 - RNA polymerase I complex (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function)
GO:0046983 - protein dimerization activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8652742.1 hypothetical protein Csa_014245 [Cucumis sativus]3.52e-69100Show/hide
Query:  MEHGSFTDETKSTFSVADEDHTLANTLRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGDPAREVLKDACQNLMVVCQHVRNTFDKAVLDVKLTNPVRD
        MEHGSFTDETKSTFSVADEDHTLANTLRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGDPAREVLKDACQNLMVVCQHVRNTFDKAVLDVKLTNPVRD
Subjt:  MEHGSFTDETKSTFSVADEDHTLANTLRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGDPAREVLKDACQNLMVVCQHVRNTFDKAVLDVKLTNPVRD

Query:  INIK
        INIK
Subjt:  INIK

XP_004147276.2 DNA-directed RNA polymerases I and III subunit RPAC2 [Cucumis sativus]1.52e-70100Show/hide
Query:  MEHGSFTDETKSTFSVADEDHTLANTLRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGDPAREVLKDACQNLMVVCQHVRNTFDKAVLDVKLTNPVRD
        MEHGSFTDETKSTFSVADEDHTLANTLRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGDPAREVLKDACQNLMVVCQHVRNTFDKAVLDVKLTNPVRD
Subjt:  MEHGSFTDETKSTFSVADEDHTLANTLRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGDPAREVLKDACQNLMVVCQHVRNTFDKAVLDVKLTNPVRD

Query:  INIK
        INIK
Subjt:  INIK

XP_022948356.1 DNA-directed RNA polymerases I and III subunit RPAC2 [Cucurbita moschata]5.53e-6491.35Show/hide
Query:  MEHGSFTDETKSTFSVADEDHTLANTLRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGDPAREVLKDACQNLMVVCQHVRNTFDKAVLDVKLTNPVRD
        MEHGSFTDE+KSTFS+ADEDHTLAN++RYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGDPAREVLKDACQNLM VCQHVRNT DKAVLD KLT PV D
Subjt:  MEHGSFTDETKSTFSVADEDHTLANTLRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGDPAREVLKDACQNLMVVCQHVRNTFDKAVLDVKLTNPVRD

Query:  INIK
        INIK
Subjt:  INIK

XP_023522054.1 DNA-directed RNA polymerases I and III subunit RPAC2-like [Cucurbita pepo subsp. pepo]1.36e-6492.31Show/hide
Query:  MEHGSFTDETKSTFSVADEDHTLANTLRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGDPAREVLKDACQNLMVVCQHVRNTFDKAVLDVKLTNPVRD
        MEHGSFTDETKSTFS+ADEDHTLAN++RYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGDPAREVLKDACQNLM VCQHVRNT DKAVLD KLT PV D
Subjt:  MEHGSFTDETKSTFSVADEDHTLANTLRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGDPAREVLKDACQNLMVVCQHVRNTFDKAVLDVKLTNPVRD

Query:  INIK
        INIK
Subjt:  INIK

XP_038893936.1 DNA-directed RNA polymerases I and III subunit RPAC2 [Benincasa hispida]3.45e-6795.19Show/hide
Query:  MEHGSFTDETKSTFSVADEDHTLANTLRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGDPAREVLKDACQNLMVVCQHVRNTFDKAVLDVKLTNPVRD
        MEHGSFTDETKSTFS+ADEDHTLAN LRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGDPAREVLKDACQNLMVVCQHVRNTFDKAVLD+KLT PV D
Subjt:  MEHGSFTDETKSTFSVADEDHTLANTLRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGDPAREVLKDACQNLMVVCQHVRNTFDKAVLDVKLTNPVRD

Query:  INIK
        INIK
Subjt:  INIK

TrEMBL top hitse value%identityAlignment
A0A0A0LUT5 RNA_pol_L_2 domain-containing protein7.35e-71100Show/hide
Query:  MEHGSFTDETKSTFSVADEDHTLANTLRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGDPAREVLKDACQNLMVVCQHVRNTFDKAVLDVKLTNPVRD
        MEHGSFTDETKSTFSVADEDHTLANTLRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGDPAREVLKDACQNLMVVCQHVRNTFDKAVLDVKLTNPVRD
Subjt:  MEHGSFTDETKSTFSVADEDHTLANTLRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGDPAREVLKDACQNLMVVCQHVRNTFDKAVLDVKLTNPVRD

Query:  INIK
        INIK
Subjt:  INIK

A0A0A0LV21 RNA_pol_L_2 domain-containing protein2.06e-6289.81Show/hide
Query:  MEHGSFTDETKSTFSVADEDHTLANTLRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGDPAREVLKDACQNLMVVCQHVRNTFDKAVLDVKLTNP---
        MEHGSFTDETKSTFS+ADEDHTLAN LR TLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGDPAREVLKDACQNLMVVCQHVRNTFDKAVLD  LT P   
Subjt:  MEHGSFTDETKSTFSVADEDHTLANTLRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGDPAREVLKDACQNLMVVCQHVRNTFDKAVLDVKLTNP---

Query:  -VRDINIK
         V DINIK
Subjt:  -VRDINIK

A0A6J1D9Q8 DNA-directed RNA polymerases I and III subunit RPAC21.55e-6390.38Show/hide
Query:  MEHGSFTDETKSTFSVADEDHTLANTLRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGDPAREVLKDACQNLMVVCQHVRNTFDKAVLDVKLTNPVRD
        MEHGSF+DE+KSTFS+ADEDHTLAN LRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGD AREVLKD+CQNLMVVCQHVRNTFDK+VLD KLT PV D
Subjt:  MEHGSFTDETKSTFSVADEDHTLANTLRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGDPAREVLKDACQNLMVVCQHVRNTFDKAVLDVKLTNPVRD

Query:  INIK
        INIK
Subjt:  INIK

A0A6J1G901 DNA-directed RNA polymerases I and III subunit RPAC22.68e-6491.35Show/hide
Query:  MEHGSFTDETKSTFSVADEDHTLANTLRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGDPAREVLKDACQNLMVVCQHVRNTFDKAVLDVKLTNPVRD
        MEHGSFTDE+KSTFS+ADEDHTLAN++RYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGDPAREVLKDACQNLM VCQHVRNT DKAVLD KLT PV D
Subjt:  MEHGSFTDETKSTFSVADEDHTLANTLRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGDPAREVLKDACQNLMVVCQHVRNTFDKAVLDVKLTNPVRD

Query:  INIK
        INIK
Subjt:  INIK

A0A6J1KDK3 DNA-directed RNA polymerases I and III subunit RPAC22.68e-6491.35Show/hide
Query:  MEHGSFTDETKSTFSVADEDHTLANTLRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGDPAREVLKDACQNLMVVCQHVRNTFDKAVLDVKLTNPVRD
        MEHGSFTDE+KSTFS+ADEDHTLAN++RYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGDPAREVLKDACQNLM VCQHVRNT DKAVLD KLT PV D
Subjt:  MEHGSFTDETKSTFSVADEDHTLANTLRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGDPAREVLKDACQNLMVVCQHVRNTFDKAVLDVKLTNPVRD

Query:  INIK
        INIK
Subjt:  INIK

SwissProt top hitse value%identityAlignment
P0DPB6 DNA-directed RNA polymerases I and III subunit RPAC23.0e-1643.62Show/hide
Query:  MEHGSFTDETKSTFSVADEDHTLANTLRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGD-PAREVLKDACQNLMVVCQHVRNTFDKAVLDVK
        M   + TD    TF + +EDHTL N+LRY + ++P V FCGY+  HPS++++N+R+QT G  PA E  +     LM VCQHV + F+ ++ D K
Subjt:  MEHGSFTDETKSTFSVADEDHTLANTLRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGD-PAREVLKDACQNLMVVCQHVRNTFDKAVLDVK

P28000 DNA-directed RNA polymerases I and III subunit RPAC21.1e-1545.78Show/hide
Query:  DETKSTFSVADEDHTLANTLRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGD-PAREVLKDACQNLMVVCQHVRNTFDKAV
        D T ++F + +EDHTL N LRY + ++P V FCGYSIPHPS+N +NIR+QT G+  A + L+   ++LM +C  V + F + +
Subjt:  DETKSTFSVADEDHTLANTLRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGD-PAREVLKDACQNLMVVCQHVRNTFDKAV

Q1RMG8 DNA-directed RNA polymerases I and III subunit RPAC21.1e-1542.55Show/hide
Query:  MEHGSFTDETKSTFSVADEDHTLANTLRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGD-PAREVLKDACQNLMVVCQHVRNTFDKAVLDVK
        M   + TD    TF + +EDHTL N+LRY + ++P V FCGY+  HPS++++N+R+QT G  PA E  +    +LM VCQHV + F+ ++ + K
Subjt:  MEHGSFTDETKSTFSVADEDHTLANTLRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGD-PAREVLKDACQNLMVVCQHVRNTFDKAVLDVK

Q5XK67 DNA-directed RNA polymerases I and III subunit RPAC27.8e-1747.13Show/hide
Query:  DETKSTFSVADEDHTLANTLRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQT-TGDPAREVLKDACQNLMVVCQHVRNTFDKAVLDVK
        +E+  TF + +EDHTL N+LRY + ++P V FCGYSI HPS+ ++N R+QT  G PA E  +     L+ VCQHV NTF+ ++ + K
Subjt:  DETKSTFSVADEDHTLANTLRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQT-TGDPAREVLKDACQNLMVVCQHVRNTFDKAVLDVK

Q6DRI4 DNA-directed RNA polymerases I and III subunit RPAC21.1e-1547.13Show/hide
Query:  DETKSTFSVADEDHTLANTLRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQT-TGDPAREVLKDACQNLMVVCQHVRNTFDKAVLDVK
        DE   TF + +EDHTL N+LRY + +   V FCGYSI HPS++++N R+QT  G PA E L++   NL  VC+HV  TF+  + + K
Subjt:  DETKSTFSVADEDHTLANTLRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQT-TGDPAREVLKDACQNLMVVCQHVRNTFDKAVLDVK

Arabidopsis top hitse value%identityAlignment
AT2G29540.1 RNApolymerase 14 kDa subunit2.0e-3165.59Show/hide
Query:  MEHGSFTDETKSTFSVADEDHTLANTLRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGDPAREVLKDACQNLMVVCQHVRNTFDKAVLDVK
        MEHGSFT+ + ++F++++EDHTLAN +R+ LNQDPRVT   Y+IPHPS  +VNIRVQTTGDPAREV KDACQ LM + +HVR+ FDKAV + K
Subjt:  MEHGSFTDETKSTFSVADEDHTLANTLRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGDPAREVLKDACQNLMVVCQHVRNTFDKAVLDVK

AT2G29540.2 RNApolymerase 14 kDa subunit2.0e-3165.59Show/hide
Query:  MEHGSFTDETKSTFSVADEDHTLANTLRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGDPAREVLKDACQNLMVVCQHVRNTFDKAVLDVK
        MEHGSFT+ + ++F++++EDHTLAN +R+ LNQDPRVT   Y+IPHPS  +VNIRVQTTGDPAREV KDACQ LM + +HVR+ FDKAV + K
Subjt:  MEHGSFTDETKSTFSVADEDHTLANTLRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGDPAREVLKDACQNLMVVCQHVRNTFDKAVLDVK

AT2G29540.3 RNApolymerase 14 kDa subunit5.5e-1869.49Show/hide
Query:  PRVTFCGYSIPHPSDNRVNIRVQTTGDPAREVLKDACQNLMVVCQHVRNTFDKAVLDVK
        PRVT   Y+IPHPS  +VNIRVQTTGDPAREV KDACQ LM + +HVR+ FDKAV + K
Subjt:  PRVTFCGYSIPHPSDNRVNIRVQTTGDPAREVLKDACQNLMVVCQHVRNTFDKAVLDVK

AT3G52090.1 DNA-directed RNA polymerase, RBP11-like6.8e-0831.11Show/hide
Query:  SFTDETK----STFSVADEDHTLANTLRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGDPA-REVLKDACQNLMVVCQHVRNTFDKAV
        S+  +TK    ++F+V  EDHT+ N +R  L++D  V F GY +PHP   ++ +R+ TT   +  +    A  +L     +++N F+  V
Subjt:  SFTDETK----STFSVADEDHTLANTLRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGDPA-REVLKDACQNLMVVCQHVRNTFDKAV

AT3G52090.2 DNA-directed RNA polymerase, RBP11-like6.4e-0637.66Show/hide
Query:  SFTDETK----STFSVADEDHTLANTLRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGDPAREVLKDACQNLMVV
        S+  +TK    ++F+V  EDHT+ N +R  L++D  V F GY +PHP   ++ +R     DP     KD  +NL VV
Subjt:  SFTDETK----STFSVADEDHTLANTLRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGDPAREVLKDACQNLMVV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAACATGGATCCTTCACAGATGAGACCAAATCAACATTTTCTGTGGCTGATGAAGATCATACACTTGCAAATACTCTCAGATACACTTTGAACCAAGATCCAAGAGT
GACATTCTGTGGATACAGCATCCCTCATCCTTCAGATAATCGAGTTAATATTCGAGTTCAGACAACAGGTGATCCTGCGAGAGAGGTTTTGAAAGATGCTTGTCAGAACT
TGATGGTGGTGTGCCAACATGTGAGGAACACATTTGACAAAGCTGTGCTTGATGTCAAACTCACCAACCCTGTGCGAGACATTAATATCAAATAG
mRNA sequenceShow/hide mRNA sequence
ATGGAACATGGATCCTTCACAGATGAGACCAAATCAACATTTTCTGTGGCTGATGAAGATCATACACTTGCAAATACTCTCAGATACACTTTGAACCAAGATCCAAGAGT
GACATTCTGTGGATACAGCATCCCTCATCCTTCAGATAATCGAGTTAATATTCGAGTTCAGACAACAGGTGATCCTGCGAGAGAGGTTTTGAAAGATGCTTGTCAGAACT
TGATGGTGGTGTGCCAACATGTGAGGAACACATTTGACAAAGCTGTGCTTGATGTCAAACTCACCAACCCTGTGCGAGACATTAATATCAAATAG
Protein sequenceShow/hide protein sequence
MEHGSFTDETKSTFSVADEDHTLANTLRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGDPAREVLKDACQNLMVVCQHVRNTFDKAVLDVKLTNPVRDINIK