; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cucsat.G15054 (gene) of Cucumber (B10) v3 genome

Gene IDCucsat.G15054
OrganismCucumis sativus L. var. sativus cv. B10 (Cucumber (B10) v3)
Descriptionphotosystem I reaction center subunit VI, chloroplastic-like
Genome locationctg1918:108782..111452
RNA-Seq ExpressionCucsat.G15054
SyntenyCucsat.G15054
Gene Ontology termsGO:0015979 - photosynthesis (biological process)
GO:0009535 - chloroplast thylakoid membrane (cellular component)
GO:0009538 - photosystem I reaction center (cellular component)
GO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR004928 - Photosystem I PsaH, reaction centre subunit VI


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_011651500.1 photosystem I reaction center subunit VI, chloroplastic [Cucumis sativus]1.02e-6599.03Show/hide
Query:  FRAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGGATLAYFSATAPDDVLPIKKGPQLPPKLGPR
        F+AGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGGATLAYFSATAPDDVLPIKKGPQLPPKLGPR
Subjt:  FRAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGGATLAYFSATAPDDVLPIKKGPQLPPKLGPR

Query:  GKI
        GKI
Subjt:  GKI

XP_022153665.1 photosystem I reaction center subunit VI, chloroplastic-like [Momordica charantia]3.58e-66100Show/hide
Query:  FRAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGGATLAYFSATAPDDVLPIKKGPQLPPKLGPR
        FRAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGGATLAYFSATAPDDVLPIKKGPQLPPKLGPR
Subjt:  FRAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGGATLAYFSATAPDDVLPIKKGPQLPPKLGPR

Query:  GKI
        GKI
Subjt:  GKI

XP_022949150.1 photosystem I reaction center subunit VI, chloroplastic-like [Cucurbita moschata]2.91e-6598.06Show/hide
Query:  FRAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGGATLAYFSATAPDDVLPIKKGPQLPPKLGPR
        F+AGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGG+TLAYFSATAPDDVLPIKKGPQLPPKLGPR
Subjt:  FRAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGGATLAYFSATAPDDVLPIKKGPQLPPKLGPR

Query:  GKI
        GKI
Subjt:  GKI

XP_022955723.1 photosystem I reaction center subunit VI, chloroplastic-like [Cucurbita moschata]2.91e-6598.06Show/hide
Query:  FRAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGGATLAYFSATAPDDVLPIKKGPQLPPKLGPR
        F+AGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGGATLAY+SATAPDDVLPIKKGPQLPPKLGPR
Subjt:  FRAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGGATLAYFSATAPDDVLPIKKGPQLPPKLGPR

Query:  GKI
        GKI
Subjt:  GKI

XP_023529177.1 photosystem I reaction center subunit VI, chloroplastic-like [Cucurbita pepo subsp. pepo]2.91e-6598.06Show/hide
Query:  FRAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGGATLAYFSATAPDDVLPIKKGPQLPPKLGPR
        F+AGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGGATLAY+SATAPDDVLPIKKGPQLPPKLGPR
Subjt:  FRAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGGATLAYFSATAPDDVLPIKKGPQLPPKLGPR

Query:  GKI
        GKI
Subjt:  GKI

TrEMBL top hitse value%identityAlignment
A0A0A0LAW4 Uncharacterized protein4.94e-6699.03Show/hide
Query:  FRAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGGATLAYFSATAPDDVLPIKKGPQLPPKLGPR
        F+AGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGGATLAYFSATAPDDVLPIKKGPQLPPKLGPR
Subjt:  FRAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGGATLAYFSATAPDDVLPIKKGPQLPPKLGPR

Query:  GKI
        GKI
Subjt:  GKI

A0A5D3C9C3 Photosystem I reaction center subunit VI1.41e-6598.06Show/hide
Query:  FRAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGGATLAYFSATAPDDVLPIKKGPQLPPKLGPR
        F+AGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGGATLAY+SATAPDDVLPIKKGPQLPPKLGPR
Subjt:  FRAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGGATLAYFSATAPDDVLPIKKGPQLPPKLGPR

Query:  GKI
        GKI
Subjt:  GKI

A0A6J1DHG2 photosystem I reaction center subunit VI, chloroplastic-like1.73e-66100Show/hide
Query:  FRAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGGATLAYFSATAPDDVLPIKKGPQLPPKLGPR
        FRAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGGATLAYFSATAPDDVLPIKKGPQLPPKLGPR
Subjt:  FRAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGGATLAYFSATAPDDVLPIKKGPQLPPKLGPR

Query:  GKI
        GKI
Subjt:  GKI

A0A6J1IVS0 photosystem I reaction center subunit VI, chloroplastic-like1.41e-6598.06Show/hide
Query:  FRAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGGATLAYFSATAPDDVLPIKKGPQLPPKLGPR
        F+AGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGGATLAY+SATAPDDVLPIKKGPQLPPKLGPR
Subjt:  FRAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGGATLAYFSATAPDDVLPIKKGPQLPPKLGPR

Query:  GKI
        GKI
Subjt:  GKI

A0A6J1K6V8 photosystem I reaction center subunit VI, chloroplastic-like1.41e-6598.06Show/hide
Query:  FRAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGGATLAYFSATAPDDVLPIKKGPQLPPKLGPR
        F+AGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGG+TLAYFSATAPDDVLPIKKGPQLPPKLGPR
Subjt:  FRAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGGATLAYFSATAPDDVLPIKKGPQLPPKLGPR

Query:  GKI
        GKI
Subjt:  GKI

SwissProt top hitse value%identityAlignment
O04006 Photosystem I reaction center subunit VI, chloroplastic1.5e-4586.27Show/hide
Query:  RAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGGATLAYFSATAPDDVLPIKKGPQLPPKLGPRG
        RAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYN LQSKFFETFAAPFTKRGLLLKFL+LGGG+ L Y SA++  DVLPIK+GPQ  PKLGPRG
Subjt:  RAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGGATLAYFSATAPDDVLPIKKGPQLPPKLGPRG

Query:  KI
        K+
Subjt:  KI

O65101 Photosystem I reaction center subunit VI, chloroplastic3.4e-4586.27Show/hide
Query:  RAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGGATLAYFSATAPDDVLPIKKGPQLPPKLGPRG
        RA AVVAKYGDKSVYFDL+D+GNTTGQWDLYGSDAPSPYN LQSKFFETFAAPFTKRGLLLKFLLLGGG+ LAY SA+A  D+LPIKKGPQ PP+ GPRG
Subjt:  RAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGGATLAYFSATAPDDVLPIKKGPQLPPKLGPRG

Query:  KI
        KI
Subjt:  KI

P22179 Photosystem I reaction center subunit VI, chloroplastic3.1e-4685.29Show/hide
Query:  RAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGGATLAYFSATAPDDVLPIKKGPQLPPKLGPRG
        R+GA+VAKYGDKSVYFDLED+ NTTGQWD+YGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFL+LGGG+ L Y SA AP DVLPI +GPQ PPKLGPRG
Subjt:  RAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGGATLAYFSATAPDDVLPIKKGPQLPPKLGPRG

Query:  KI
        KI
Subjt:  KI

Q9SUI6 Photosystem I reaction center subunit VI-2, chloroplastic4.0e-4683.33Show/hide
Query:  FVTLCFRAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGGATLAYFSATAPDDVLPIKKGPQLPP
        F T   RAGAVVAKYGDKSVYFDLEDLGNTTGQWD+YGSDAPSPYN LQSKFFETFAAPFTKRGLLLKFL+LGGG+ L Y SA +  DVLPIK+GPQ PP
Subjt:  FVTLCFRAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGGATLAYFSATAPDDVLPIKKGPQLPP

Query:  KLGPRGKI
        KLGPRGK+
Subjt:  KLGPRGKI

Q9SUI7 Photosystem I reaction center subunit VI-1, chloroplastic9.9e-4580Show/hide
Query:  LVFVTLCFRAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGGATLAYFSATAPDDVLPIKKGPQL
        L F     RA  VVAKYGDKSVYFDLEDLGNTTGQWD+YGSDAPSPYN LQSKFFETFAAPFTKRGLLLKFL+LGGG+ L Y SAT+  +VLPIK+GPQ 
Subjt:  LVFVTLCFRAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGGATLAYFSATAPDDVLPIKKGPQL

Query:  PPKLGPRGKI
        PPKLGPRGK+
Subjt:  PPKLGPRGKI

Arabidopsis top hitse value%identityAlignment
AT1G52230.1 photosystem I subunit H22.9e-4783.33Show/hide
Query:  FVTLCFRAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGGATLAYFSATAPDDVLPIKKGPQLPP
        F T   RAGAVVAKYGDKSVYFDLEDLGNTTGQWD+YGSDAPSPYN LQSKFFETFAAPFTKRGLLLKFL+LGGG+ L Y SA +  DVLPIK+GPQ PP
Subjt:  FVTLCFRAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGGATLAYFSATAPDDVLPIKKGPQLPP

Query:  KLGPRGKI
        KLGPRGK+
Subjt:  KLGPRGKI

AT3G16140.1 photosystem I subunit H-17.1e-4680Show/hide
Query:  LVFVTLCFRAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGGATLAYFSATAPDDVLPIKKGPQL
        L F     RA  VVAKYGDKSVYFDLEDLGNTTGQWD+YGSDAPSPYN LQSKFFETFAAPFTKRGLLLKFL+LGGG+ L Y SAT+  +VLPIK+GPQ 
Subjt:  LVFVTLCFRAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGGATLAYFSATAPDDVLPIKKGPQL

Query:  PPKLGPRGKI
        PPKLGPRGK+
Subjt:  PPKLGPRGKI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATCCATATCATCAACAAGGATAGCCTTATCCACCCCCTTCCTACATGGCACCTCCTAAGTCACACTTCAAATTGTCTTCCAACATCCCATTTCGCCATGTGTCATAG
GAAAATCCAATCACGAAACCCAAAATCCCATTTCAACCCTCACTTCCTCCCTCACCCTCAGTTTGCAACTCCAAATTTGTTCCCTTCCAGACCAAACCCACGCAACTATG
GCTTCCTTAGCAACATTGGCCGCCGTTCAACCCGTCACCGTAAAGGGTCTTGGTGGAAGCTCCCTTGCCGGAGCCAAGCTCCCTCTCAGACCATCTCGCCAGACCTTCAG
ACCCAAAAACTTCAAGTACCAAAATCATTCACCAAACACCTCTCTATTTTCCTTTCTTTTTTCTTTTTCTTTTTCTTTTTTTTTATTTTTTATTTAAAACCTGTGGCTTT
TTTGTTTTTTCTTGTTTTTGTTACTCTGTGTTTCAGGGCTGGTGCTGTGGTTGCTAAGTATGGTGACAAAAGCGTTTACTTTGATTTGGAGGATTTGGGCAACACCACTG
GACAGTGGGATTTGTATGGATCTGATGCTCCTTCACCATACAATTCTCTTCAGAGCAAATTCTTTGAGACCTTTGCTGCTCCGTTCACCAAGAGAGGATTGTTGCTCAAG
TTCTTGCTACTAGGTGGTGGTGCTACTTTAGCTTATTTCAGTGCTACTGCCCCAGATGATGTTCTTCCCATTAAGAAAGGACCTCAACTTCCACCGAAACTTGGGCCACG
TGGCAAGATCTAA
mRNA sequenceShow/hide mRNA sequence
ATGATCCATATCATCAACAAGGATAGCCTTATCCACCCCCTTCCTACATGGCACCTCCTAAGTCACACTTCAAATTGTCTTCCAACATCCCATTTCGCCATGTGTCATAG
GAAAATCCAATCACGAAACCCAAAATCCCATTTCAACCCTCACTTCCTCCCTCACCCTCAGTTTGCAACTCCAAATTTGTTCCCTTCCAGACCAAACCCACGCAACTATG
GCTTCCTTAGCAACATTGGCCGCCGTTCAACCCGTCACCGTAAAGGGTCTTGGTGGAAGCTCCCTTGCCGGAGCCAAGCTCCCTCTCAGACCATCTCGCCAGACCTTCAG
ACCCAAAAACTTCAAGTACCAAAATCATTCACCAAACACCTCTCTATTTTCCTTTCTTTTTTCTTTTTCTTTTTCTTTTTTTTTATTTTTTATTTAAAACCTGTGGCTTT
TTTGTTTTTTCTTGTTTTTGTTACTCTGTGTTTCAGGGCTGGTGCTGTGGTTGCTAAGTATGGTGACAAAAGCGTTTACTTTGATTTGGAGGATTTGGGCAACACCACTG
GACAGTGGGATTTGTATGGATCTGATGCTCCTTCACCATACAATTCTCTTCAGAGCAAATTCTTTGAGACCTTTGCTGCTCCGTTCACCAAGAGAGGATTGTTGCTCAAG
TTCTTGCTACTAGGTGGTGGTGCTACTTTAGCTTATTTCAGTGCTACTGCCCCAGATGATGTTCTTCCCATTAAGAAAGGACCTCAACTTCCACCGAAACTTGGGCCACG
TGGCAAGATCTAA
Protein sequenceShow/hide protein sequence
MIHIINKDSLIHPLPTWHLLSHTSNCLPTSHFAMCHRKIQSRNPKSHFNPHFLPHPQFATPNLFPSRPNPRNYGFLSNIGRRSTRHRKGSWWKLPCRSQAPSQTISPDLQ
TQKLQVPKSFTKHLSIFLSFFFFFFFFFIFYLKPVAFLFFLVFVTLCFRAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLK
FLLLGGGATLAYFSATAPDDVLPIKKGPQLPPKLGPRGKI