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Cucsat.G15105 (gene) of Cucumber (B10) v3 genome

Gene IDCucsat.G15105
OrganismCucumis sativus L. var. sativus cv. B10 (Cucumber (B10) v3)
DescriptionRad60-SLD domain-containing protein
Genome locationctg197:725854..726582
RNA-Seq ExpressionCucsat.G15105
SyntenyCucsat.G15105
Gene Ontology termsGO:0009451 - RNA modification (biological process)
GO:0043231 - intracellular membrane-bounded organelle (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8647971.1 hypothetical protein Csa_000113 [Cucumis sativus]5.89e-8699.32Show/hide
Query:  SDADKSPAPFAKRAKIVNLAATSSVNGNPKEKQVEIEHKEEERLSPPPKVLVDAKNRRGKDSTLKKLRLKKQESAFVALSTKNFPREAKESAKVDVGNTS
        SDADKSPAPFAKRAKIVNLAATSSVNGNPKEKQVEIEHKEEERLSPPPKVLVDAKNRRGKDSTLKKLRLKKQESAFVALSTKNFPREAKESAKVDVGNTS
Subjt:  SDADKSPAPFAKRAKIVNLAATSSVNGNPKEKQVEIEHKEEERLSPPPKVLVDAKNRRGKDSTLKKLRLKKQESAFVALSTKNFPREAKESAKVDVGNTS

Query:  KDSLKPDLDVQTSLYSKERAKVVRIVVSVRNSDKEELRKCRMLVVY
        KDSLKPDLDVQTSLYSKERAKVVRIVVSVRNSDKEELRKCRMLV Y
Subjt:  KDSLKPDLDVQTSLYSKERAKVVRIVVSVRNSDKEELRKCRMLVVY

KGN52648.2 hypothetical protein Csa_008468 [Cucumis sativus]7.51e-5876.22Show/hide
Query:  DADKSPAPFAKRAKIVNLAATSSVNGNPKEKQVEIEHKEEERLSPPPKVLVDAKNRRGKDSTLKKLRLKKQESAFVALSTKNFPREAKESAKVDVGNTSK
        DADKSPAPF KRAKIVN AATSSVNGNPKEKQVEIE KEE+ L PPPKVLVDA+NR  +DSTLK+LRLKKQE A VALS KN  RE +ESAKVDVGNTS 
Subjt:  DADKSPAPFAKRAKIVNLAATSSVNGNPKEKQVEIEHKEEERLSPPPKVLVDAKNRRGKDSTLKKLRLKKQESAFVALSTKNFPREAKESAKVDVGNTSK

Query:  DSLKPDLDVQTSLYSKERAKVVRIVVSVRNSDKEELRKCRMLV
        D L+PDLDVQT + SKERAK   IV+SVR+SDKEEL++ R+ V
Subjt:  DSLKPDLDVQTSLYSKERAKVVRIVVSVRNSDKEELRKCRMLV

XP_004135076.1 uncharacterized protein LOC101214853 [Cucumis sativus]2.10e-5876.39Show/hide
Query:  SDADKSPAPFAKRAKIVNLAATSSVNGNPKEKQVEIEHKEEERLSPPPKVLVDAKNRRGKDSTLKKLRLKKQESAFVALSTKNFPREAKESAKVDVGNTS
        SDADKSPAPF KRAKIVN AATSSVNGNPKEKQVEIE KEE+ L PPPKVLVDA+NR  +DSTLK+LRLKKQE A VALS KN  RE +ESAKVDVGNTS
Subjt:  SDADKSPAPFAKRAKIVNLAATSSVNGNPKEKQVEIEHKEEERLSPPPKVLVDAKNRRGKDSTLKKLRLKKQESAFVALSTKNFPREAKESAKVDVGNTS

Query:  KDSLKPDLDVQTSLYSKERAKVVRIVVSVRNSDKEELRKCRMLV
         D L+PDLDVQT + SKERAK   IV+SVR+SDKEEL++ R+ V
Subjt:  KDSLKPDLDVQTSLYSKERAKVVRIVVSVRNSDKEELRKCRMLV

XP_008446647.1 PREDICTED: uncharacterized protein LOC103489317 isoform X1 [Cucumis melo]2.76e-6177.78Show/hide
Query:  SDADKSPAPFAKRAKIVNLAATSSVNGNPKEKQVEIEHKEEERLSPPPKVLVDAKNRRGKDSTLKKLRLKKQESAFVALSTKNFPREAKESAKVDVGNTS
        SDADKSPAPF KRAKI NLAATSSVNGNPKEKQVEIE  EE+ L PPPKVLVD  NRRG+DSTLK+LRLKKQE A VALS KN  RE +ESAKVDVGNTS
Subjt:  SDADKSPAPFAKRAKIVNLAATSSVNGNPKEKQVEIEHKEEERLSPPPKVLVDAKNRRGKDSTLKKLRLKKQESAFVALSTKNFPREAKESAKVDVGNTS

Query:  KDSLKPDLDVQTSLYSKERAKVVRIVVSVRNSDKEELRKCRMLV
        KDSL+PDLDVQT + SKERAK   IV+SVR+SDKEEL++ R+ V
Subjt:  KDSLKPDLDVQTSLYSKERAKVVRIVVSVRNSDKEELRKCRMLV

XP_038891511.1 uncharacterized protein LOC120080907 [Benincasa hispida]4.11e-5372.92Show/hide
Query:  SDADKSPAPFAKRAKIVNLAATSSVNGNPKEKQVEIEHKEEERLSPPPKVLVDAKNRRGKDSTLKKLRLKKQESAFVALSTKNFPREAKESAKVDVGNTS
        SDADKSPAPF+KR KIVN AATS V+ NPKEKQVEIE KEE+ L PPPKVLVDA+N  G+DSTLK+LRLKKQE A VALS KN  RE +ESAKVDVGN  
Subjt:  SDADKSPAPFAKRAKIVNLAATSSVNGNPKEKQVEIEHKEEERLSPPPKVLVDAKNRRGKDSTLKKLRLKKQESAFVALSTKNFPREAKESAKVDVGNTS

Query:  KDSLKPDLDVQTSLYSKERAKVVRIVVSVRNSDKEELRKCRMLV
         DSL+PDLDVQT + SKERAK   IV+SVR+SDKEEL++ R+ V
Subjt:  KDSLKPDLDVQTSLYSKERAKVVRIVVSVRNSDKEELRKCRMLV

TrEMBL top hitse value%identityAlignment
A0A0A0KQ74 Rad60-SLD domain-containing protein5.83e-8499.32Show/hide
Query:  SDADKSPAPFAKRAKIVNLAATSSVNGNPKEKQVEIEHKEEERLSPPPKVLVDAKNRRGKDSTLKKLRLKKQESAFVALSTKNFPREAKESAKVDVGNTS
        SDADKSPAPFAKRAKIVNLAATSSVNGNPKEKQVEIEHKEEERLSPPPKVLVDAKNRRGKDSTLKKLRLKKQESAFVALSTKNFPREAKESAKVDVGNTS
Subjt:  SDADKSPAPFAKRAKIVNLAATSSVNGNPKEKQVEIEHKEEERLSPPPKVLVDAKNRRGKDSTLKKLRLKKQESAFVALSTKNFPREAKESAKVDVGNTS

Query:  KDSLKPDLDVQTSLYSKERAKVVRIVVSVRNSDKEELRKCRMLVVY
        KDSLKPDLDVQTSLYSKERAKVVRIVVSVRNSDKEELRKCRMLV Y
Subjt:  KDSLKPDLDVQTSLYSKERAKVVRIVVSVRNSDKEELRKCRMLVVY

A0A0A0KWH7 Rad60-SLD domain-containing protein1.02e-5876.39Show/hide
Query:  SDADKSPAPFAKRAKIVNLAATSSVNGNPKEKQVEIEHKEEERLSPPPKVLVDAKNRRGKDSTLKKLRLKKQESAFVALSTKNFPREAKESAKVDVGNTS
        SDADKSPAPF KRAKIVN AATSSVNGNPKEKQVEIE KEE+ L PPPKVLVDA+NR  +DSTLK+LRLKKQE A VALS KN  RE +ESAKVDVGNTS
Subjt:  SDADKSPAPFAKRAKIVNLAATSSVNGNPKEKQVEIEHKEEERLSPPPKVLVDAKNRRGKDSTLKKLRLKKQESAFVALSTKNFPREAKESAKVDVGNTS

Query:  KDSLKPDLDVQTSLYSKERAKVVRIVVSVRNSDKEELRKCRMLV
         D L+PDLDVQT + SKERAK   IV+SVR+SDKEEL++ R+ V
Subjt:  KDSLKPDLDVQTSLYSKERAKVVRIVVSVRNSDKEELRKCRMLV

A0A1S3BF31 uncharacterized protein LOC103489317 isoform X11.33e-6177.78Show/hide
Query:  SDADKSPAPFAKRAKIVNLAATSSVNGNPKEKQVEIEHKEEERLSPPPKVLVDAKNRRGKDSTLKKLRLKKQESAFVALSTKNFPREAKESAKVDVGNTS
        SDADKSPAPF KRAKI NLAATSSVNGNPKEKQVEIE  EE+ L PPPKVLVD  NRRG+DSTLK+LRLKKQE A VALS KN  RE +ESAKVDVGNTS
Subjt:  SDADKSPAPFAKRAKIVNLAATSSVNGNPKEKQVEIEHKEEERLSPPPKVLVDAKNRRGKDSTLKKLRLKKQESAFVALSTKNFPREAKESAKVDVGNTS

Query:  KDSLKPDLDVQTSLYSKERAKVVRIVVSVRNSDKEELRKCRMLV
        KDSL+PDLDVQT + SKERAK   IV+SVR+SDKEEL++ R+ V
Subjt:  KDSLKPDLDVQTSLYSKERAKVVRIVVSVRNSDKEELRKCRMLV

A0A5A7SVU4 Putative Ubiquitin-like superfamily protein1.33e-6177.78Show/hide
Query:  SDADKSPAPFAKRAKIVNLAATSSVNGNPKEKQVEIEHKEEERLSPPPKVLVDAKNRRGKDSTLKKLRLKKQESAFVALSTKNFPREAKESAKVDVGNTS
        SDADKSPAPF KRAKI NLAATSSVNGNPKEKQVEIE  EE+ L PPPKVLVD  NRRG+DSTLK+LRLKKQE A VALS KN  RE +ESAKVDVGNTS
Subjt:  SDADKSPAPFAKRAKIVNLAATSSVNGNPKEKQVEIEHKEEERLSPPPKVLVDAKNRRGKDSTLKKLRLKKQESAFVALSTKNFPREAKESAKVDVGNTS

Query:  KDSLKPDLDVQTSLYSKERAKVVRIVVSVRNSDKEELRKCRMLV
        KDSL+PDLDVQT + SKERAK   IV+SVR+SDKEEL++ R+ V
Subjt:  KDSLKPDLDVQTSLYSKERAKVVRIVVSVRNSDKEELRKCRMLV

A0A6J1JEF8 uncharacterized protein LOC1114836583.47e-4463.19Show/hide
Query:  SDADKSPAPFAKRAKIVNLAATSSVNGNPKEKQVEIEHKEEERLSPPPKVLVDAKNRRGKDSTLKKLRLKKQESAFVALSTKNFPREAKESAKVDVGNTS
        SDA  SP PF+KR++I+N A TS V+GNPKEKQVEIE +EE+ L PPPKV VDAKN  G+DSTLK+LRL K E A V LS KN  RE +ESAK+DVGNT 
Subjt:  SDADKSPAPFAKRAKIVNLAATSSVNGNPKEKQVEIEHKEEERLSPPPKVLVDAKNRRGKDSTLKKLRLKKQESAFVALSTKNFPREAKESAKVDVGNTS

Query:  KDSLKPDLDVQTSLYSKERAKVVRIVVSVRNSDKEELRKCRMLV
        +D L+P LD Q  + SKERAK   IV+SVR+SDKEEL++ R+ +
Subjt:  KDSLKPDLDVQTSLYSKERAKVVRIVVSVRNSDKEELRKCRMLV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G68185.1 Ubiquitin-like superfamily protein8.8e-0428.15Show/hide
Query:  DADKSPAPFAKRAKIVNLAATSSVNGNPKEKQVEIEHKEEERLSPPPKVLVDAKNRRGKDSTLKKLRLKKQESAFVALSTKNFPREAKESAKVDVGNTSK
        D D S  P  K+AK      + +V     + +V     +++ L PPPKV+ D      +DST+K LR KK E      +  +  +E +ESAK +V    +
Subjt:  DADKSPAPFAKRAKIVNLAATSSVNGNPKEKQVEIEHKEEERLSPPPKVLVDAKNRRGKDSTLKKLRLKKQESAFVALSTKNFPREAKESAKVDVGNTSK

Query:  DSLKPDLDVQTSLYSKERAKVVRIVVSVRNSDKEE
        +S  P  +    L S+      +IV+++++ D ++
Subjt:  DSLKPDLDVQTSLYSKERAKVVRIVVSVRNSDKEE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TCAGACGCAGACAAATCTCCGGCGCCTTTTGCAAAGCGAGCAAAGATTGTGAATCTGGCGGCTACGAGTTCGGTGAATGGTAACCCAAAAGAAAAACAAGTGGAAATTGA
ACATAAAGAGGAAGAACGGCTTTCTCCTCCACCGAAAGTGTTAGTTGATGCAAAGAATAGGCGTGGGAAAGATTCCACATTGAAGAAGTTAAGGTTAAAGAAGCAAGAGT
CGGCCTTTGTTGCTTTATCAACTAAAAACTTCCCGCGAGAAGCAAAGGAATCTGCAAAAGTGGATGTAGGAAACACGTCCAAGGACTCTCTGAAACCTGATTTGGACGTC
CAAACTTCTCTTTATTCTAAAGAAAGAGCAAAAGTTGTAAGAATTGTTGTTTCTGTACGCAACAGTGACAAGGAAGAGCTCAGAAAGTGTCGCATGCTTGTGGTATATTC
TCGTCCATCTCTGCGTGTT
mRNA sequenceShow/hide mRNA sequence
TCAGACGCAGACAAATCTCCGGCGCCTTTTGCAAAGCGAGCAAAGATTGTGAATCTGGCGGCTACGAGTTCGGTGAATGGTAACCCAAAAGAAAAACAAGTGGAAATTGA
ACATAAAGAGGAAGAACGGCTTTCTCCTCCACCGAAAGTGTTAGTTGATGCAAAGAATAGGCGTGGGAAAGATTCCACATTGAAGAAGTTAAGGTTAAAGAAGCAAGAGT
CGGCCTTTGTTGCTTTATCAACTAAAAACTTCCCGCGAGAAGCAAAGGAATCTGCAAAAGTGGATGTAGGAAACACGTCCAAGGACTCTCTGAAACCTGATTTGGACGTC
CAAACTTCTCTTTATTCTAAAGAAAGAGCAAAAGTTGTAAGAATTGTTGTTTCTGTACGCAACAGTGACAAGGAAGAGCTCAGAAAGTGTCGCATGCTTGTGGTATATTC
TCGTCCATCTCTGCGTGTT
Protein sequenceShow/hide protein sequence
SDADKSPAPFAKRAKIVNLAATSSVNGNPKEKQVEIEHKEEERLSPPPKVLVDAKNRRGKDSTLKKLRLKKQESAFVALSTKNFPREAKESAKVDVGNTSKDSLKPDLDV
QTSLYSKERAKVVRIVVSVRNSDKEELRKCRMLVVYSRPSLRV