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Cucsat.G15376 (gene) of Cucumber (B10) v3 genome

Gene IDCucsat.G15376
OrganismCucumis sativus L. var. sativus cv. B10 (Cucumber (B10) v3)
DescriptionTranscription elongation factor 1 homolog
Genome locationctg2009:2708927..2711430
RNA-Seq ExpressionCucsat.G15376
SyntenyCucsat.G15376
Gene Ontology termsGO:0006368 - transcription elongation from RNA polymerase II promoter (biological process)
GO:0006414 - translational elongation (biological process)
GO:0008023 - transcription elongation factor complex (cellular component)
GO:0000993 - RNA polymerase II complex binding (molecular function)
GO:0003746 - translation elongation factor activity (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0058841.1 Transcription elongation factor 1 isoform 2 [Cucumis melo var. makuwa]6.02e-5390.53Show/hide
Query:  SLTTQDMGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTITGILFDSLVCYLLSVFYTALCTMFQMEAQ
        SL TQDMGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTITGILFDSL+ YLLSVFYTAL TM Q + +
Subjt:  SLTTQDMGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTITGILFDSLVCYLLSVFYTALCTMFQMEAQ

KAD4982421.1 hypothetical protein E3N88_19092 [Mikania micrantha]1.27e-3793.85Show/hide
Query:  TQDMGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTITG
        T  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQE+FSTT+TG
Subjt:  TQDMGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTITG

XP_004146241.1 transcription elongation factor 1 homolog [Cucumis sativus]3.42e-3796.83Show/hide
Query:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTITGI
        MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTIT +
Subjt:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTITGI

XP_024017449.1 transcription elongation factor 1 homolog isoform X2 [Morus notabilis]3.22e-3796.83Show/hide
Query:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTITGI
        MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTIT +
Subjt:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTITGI

XP_038896920.1 transcription elongation factor 1 homolog [Benincasa hispida]3.54e-3891.18Show/hide
Query:  LTTQDMGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTITGI
        ++ QDMGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRID+KNLIGEASCRICQESFSTTIT +
Subjt:  LTTQDMGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTITGI

TrEMBL top hitse value%identityAlignment
A0A0A0LAG5 Transcription elongation factor 1 homolog1.65e-3796.83Show/hide
Query:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTITGI
        MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTIT +
Subjt:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTITGI

A0A1S3C2B7 Transcription elongation factor 1 homolog1.65e-3796.83Show/hide
Query:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTITGI
        MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTIT +
Subjt:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTITGI

A0A5A7UZC1 Transcription elongation factor 1 homolog2.91e-5390.53Show/hide
Query:  SLTTQDMGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTITGILFDSLVCYLLSVFYTALCTMFQMEAQ
        SL TQDMGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTITGILFDSL+ YLLSVFYTAL TM Q + +
Subjt:  SLTTQDMGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTITGILFDSLVCYLLSVFYTALCTMFQMEAQ

A0A5N6NM69 Transcription elongation factor 1 homolog6.15e-3893.85Show/hide
Query:  TQDMGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTITG
        T  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQE+FSTT+TG
Subjt:  TQDMGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTITG

W9R774 Transcription elongation factor 1 homolog1.65e-3796.83Show/hide
Query:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTITGI
        MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTIT +
Subjt:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTITGI

SwissProt top hitse value%identityAlignment
A4IFR3 Transcription elongation factor 1 homolog1.6e-1151.61Show/hide
Query:  MGKRKSRAKPPPKKRM-DKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTIT
        MG+RKS+ KPPPKK+M   L+T F+CPFCNH  S + ++D     G  SC +C E F T IT
Subjt:  MGKRKSRAKPPPKKRM-DKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTIT

P36053 Transcription elongation factor 16.6e-1352.38Show/hide
Query:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTITGI
        MGKRK   + P K+ + KLDT F+C FCNH  SV C +D KN IG  SC+IC +SF T I  +
Subjt:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTITGI

P60002 Transcription elongation factor 1 homolog1.6e-1151.61Show/hide
Query:  MGKRKSRAKPPPKKRM-DKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTIT
        MG+RKS+ KPPPKK+M   L+T F+CPFCNH  S + ++D     G  SC +C E F T IT
Subjt:  MGKRKSRAKPPPKKRM-DKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTIT

Q8LEF3 Transcription elongation factor 1 homolog2.0e-2582.54Show/hide
Query:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTITGI
        MGKRKSRAKP P KRMDKLDT+FSCPFCNHG+SVEC IDMK+LIG+A+CRIC+ESFSTTIT +
Subjt:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTITGI

Q8LHP0 Transcription elongation factor 1 homolog4.3e-2888.89Show/hide
Query:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTITGI
        MGKRKS AKPPPKKRMDKLDTVFSCPFCNHG+SVECRIDMKNLIGEASCRICQE+FSTT+  +
Subjt:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTITGI

Arabidopsis top hitse value%identityAlignment
AT5G46030.1 unknown protein1.4e-2682.54Show/hide
Query:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTITGI
        MGKRKSRAKP P KRMDKLDT+FSCPFCNHG+SVEC IDMK+LIG+A+CRIC+ESFSTTIT +
Subjt:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTITGI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GTTGCATTCTTCAATCCGACCTGCGCTACCATTTCAACTGCGAACGATTATCTCTCCCAACTCTATCACCGATCAGCCAGCCTTACGACACAGGATATGGGGAAACGTAA
GTCAAGAGCAAAGCCCCCACCTAAGAAAAGAATGGACAAGCTCGATACTGTTTTTAGCTGTCCCTTCTGCAATCATGGGACCAGCGTTGAATGTCGCATTGATATGAAGA
ACCTGATTGGGGAAGCCTCCTGTCGGATTTGCCAAGAAAGCTTTAGCACAACTATTACAGGTATTCTCTTTGATTCTCTTGTTTGCTATCTGTTGTCTGTGTTTTACACT
GCGCTTTGTACTATGTTTCAAATGGAAGCACAAACAGTCTATGGTTCTTTTTTAGGTCTCTTCTTTTAA
mRNA sequenceShow/hide mRNA sequence
GTTGCATTCTTCAATCCGACCTGCGCTACCATTTCAACTGCGAACGATTATCTCTCCCAACTCTATCACCGATCAGCCAGCCTTACGACACAGGATATGGGGAAACGTAA
GTCAAGAGCAAAGCCCCCACCTAAGAAAAGAATGGACAAGCTCGATACTGTTTTTAGCTGTCCCTTCTGCAATCATGGGACCAGCGTTGAATGTCGCATTGATATGAAGA
ACCTGATTGGGGAAGCCTCCTGTCGGATTTGCCAAGAAAGCTTTAGCACAACTATTACAGGTATTCTCTTTGATTCTCTTGTTTGCTATCTGTTGTCTGTGTTTTACACT
GCGCTTTGTACTATGTTTCAAATGGAAGCACAAACAGTCTATGGTTCTTTTTTAGGTCTCTTCTTTTAA
Protein sequenceShow/hide protein sequence
VAFFNPTCATISTANDYLSQLYHRSASLTTQDMGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTITGILFDSLVCYLLSVFYT
ALCTMFQMEAQTVYGSFLGLFF