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Cucsat.G15405 (gene) of Cucumber (B10) v3 genome

Gene IDCucsat.G15405
OrganismCucumis sativus L. var. sativus cv. B10 (Cucumber (B10) v3)
DescriptionTranscription elongation factor SPT4 homolog
Genome locationctg2009:3504920..3511239
RNA-Seq ExpressionCucsat.G15405
SyntenyCucsat.G15405
Gene Ontology termsGO:0006325 - chromatin organization (biological process)
GO:0006397 - mRNA processing (biological process)
GO:0006414 - translational elongation (biological process)
GO:0032786 - positive regulation of DNA-templated transcription, elongation (biological process)
GO:0034243 - regulation of transcription elongation from RNA polymerase II promoter (biological process)
GO:0005634 - nucleus (cellular component)
GO:0032044 - DSIF complex (cellular component)
GO:0000993 - RNA polymerase II complex binding (molecular function)
GO:0003746 - translation elongation factor activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR009287 - Transcription initiation Spt4
IPR022800 - Spt4/RpoE2 zinc finger
IPR029040 - RNA polymerase subunit RPABC4/transcription elongation factor Spt4
IPR038510 - Spt4 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0048459.1 transcription elongation factor SPT4-like protein 2 [Cucumis melo var. makuwa]5.06e-69100Show/hide
Query:  MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQ
        MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQ
Subjt:  MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQ
XP_008461561.1 PREDICTED: transcription elongation factor SPT4 homolog 2 [Cucumis melo]1.98e-6996.19Show/hide
Query:  MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQ
        MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQ
Subjt:  MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQ

Query:  -VCNQ
         +C +
Subjt:  -VCNQ
XP_022143259.1 transcription elongation factor SPT4 homolog 2 [Momordica charantia]8.03e-6995.24Show/hide
Query:  MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQ
        MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDP RSWAARWLRIGRFVPGCYTLAVSEALPEDLQ
Subjt:  MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQ

Query:  -VCNQ
         +C +
Subjt:  -VCNQ
XP_022948256.1 transcription elongation factor SPT4 homolog 2 [Cucurbita moschata]3.99e-6995.24Show/hide
Query:  MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQ
        MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRF PGCYTLAVSEALPEDLQ
Subjt:  MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQ

Query:  -VCNQ
         +C +
Subjt:  -VCNQ
XP_038881174.1 transcription elongation factor SPT4 homolog 2 [Benincasa hispida]8.03e-6995.24Show/hide
Query:  MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQ
        MAS PAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQ
Subjt:  MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQ

Query:  -VCNQ
         +C +
Subjt:  -VCNQ
TrEMBL top hitse value%identityAlignment
A0A0A0L9Q3 Transcription elongation factor SPT4 homolog9.57e-7096.19Show/hide
Query:  MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQ
        MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQ
Subjt:  MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQ

Query:  -VCNQ
         +C +
Subjt:  -VCNQ
A0A1S3CFH1 Transcription elongation factor SPT4 homolog9.57e-7096.19Show/hide
Query:  MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQ
        MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQ
Subjt:  MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQ

Query:  -VCNQ
         +C +
Subjt:  -VCNQ
A0A5A7U4T8 Transcription elongation factor SPT4-like protein 22.45e-69100Show/hide
Query:  MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQ
        MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQ
Subjt:  MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQ
A0A6J1G8V8 Transcription elongation factor SPT4 homolog1.93e-6995.24Show/hide
Query:  MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQ
        MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRF PGCYTLAVSEALPEDLQ
Subjt:  MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQ

Query:  -VCNQ
         +C +
Subjt:  -VCNQ
A0A6J1K6X8 Transcription elongation factor SPT4 homolog1.93e-6995.24Show/hide
Query:  MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQ
        MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRF PGCYTLAVSEALPEDLQ
Subjt:  MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQ

Query:  -VCNQ
         +C +
Subjt:  -VCNQ
SwissProt top hitse value%identityAlignment
P63271 Transcription elongation factor SPT4-A8.7e-1944.09Show/hide
Query:  IPTSFGHELRACLRCRLVKTYDQFRESGCENC-PFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDL
        +P    H LRACL C LVKT DQF   GC+NC  + +M  + E V +CT+ +F+GII++M P  SW ++W R+  F PG Y ++V+  LP+ +
Subjt:  IPTSFGHELRACLRCRLVKTYDQFRESGCENC-PFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDL
Q5RFH5 Transcription elongation factor SPT46.7e-1944.09Show/hide
Query:  IPTSFGHELRACLRCRLVKTYDQFRESGCENC-PFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDL
        +P    H LRACL C LVKT DQF   GC+NC  + +M  + E V +CT+ +F+GII++M P  SW ++W R+  F PG Y ++V+  LP+ +
Subjt:  IPTSFGHELRACLRCRLVKTYDQFRESGCENC-PFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDL
Q6DGQ0 Transcription elongation factor SPT41.3e-1948.89Show/hide
Query:  IPTSFGHELRACLRCRLVKTYDQFRESGCENC-PFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALP
        +P    H LRACL C LVKT DQF   GC+NC  + +M  + E V ECT+ +F+G+I++M P  SW A+W RIG F PG Y + V+  LP
Subjt:  IPTSFGHELRACLRCRLVKTYDQFRESGCENC-PFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALP
Q8LCQ3 Transcription elongation factor SPT4 homolog 13.3e-5082.08Show/hide
Query:  MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQ
        M  APAQIPTSFGHELRACLRCRLVKTYDQFR+SGCENCPFFK+++DHER+V+ TTPNFNGIIS+MDP RSWAARWLRIG+F PGCYTLAVSEALPE++Q
Subjt:  MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQ

Query:  -VCNQS
         +C Q+
Subjt:  -VCNQS
Q94C60 Transcription elongation factor SPT4 homolog 28.6e-5188Show/hide
Query:  MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQ
        M SAPAQIPTSFGHELRACLRCRLVKTYDQFR++GCENCPFFKM+EDHER+VE TTPNFNGIISVMDP+RSWAARWLRIG+F PGCYTLAVSE LPE++Q
Subjt:  MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQ
Arabidopsis top hitse value%identityAlignment
AT5G08565.1 Transcription initiation Spt4-like protein2.3e-5182.08Show/hide
Query:  MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQ
        M  APAQIPTSFGHELRACLRCRLVKTYDQFR+SGCENCPFFK+++DHER+V+ TTPNFNGIIS+MDP RSWAARWLRIG+F PGCYTLAVSEALPE++Q
Subjt:  MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQ

Query:  -VCNQS
         +C Q+
Subjt:  -VCNQS
AT5G08565.2 Transcription initiation Spt4-like protein7.0e-4068.87Show/hide
Query:  MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQ
        M  APAQIPTSFGHELRACLRCRLVKTYDQFR+SGCENCPFFK+++DHER+V+ TTPNFNG +S            L  G+F PGCYTLAVSEALPE++Q
Subjt:  MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQ

Query:  -VCNQS
         +C Q+
Subjt:  -VCNQS
AT5G63670.1 SPT4 homolog 26.1e-5288Show/hide
Query:  MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQ
        M SAPAQIPTSFGHELRACLRCRLVKTYDQFR++GCENCPFFKM+EDHER+VE TTPNFNGIISVMDP+RSWAARWLRIG+F PGCYTLAVSE LPE++Q
Subjt:  MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQ
AT5G63670.2 SPT4 homolog 21.1e-4091.14Show/hide
Query:  MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRI
        M SAPAQIPTSFGHELRACLRCRLVKTYDQFR++GCENCPFFKM+EDHER+VE TTPNFNGIISVMDP+RSWAARWLRI
Subjt:  MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRI

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAAGCGCACCTGCTCAAATTCCTACCAGCTTCGGGCATGAGCTCAGAGCTTGTCTTCGTTGTCGTCTTGTCAAAACTTACGATCAGTTTCGAGAATCGGGCTGTGA
GAATTGCCCCTTCTTCAAGATGGACGAAGACCATGAGCGTGTTGTAGAATGCACAACCCCTAATTTTAATGGGATAATTTCAGTCATGGATCCTGCCAGAAGTTGGGCTG
CTAGATGGCTGCGAATTGGAAGATTCGTTCCAGGTTGTTACACTCTTGCAGTCTCAGAGGCTCTCCCCGAGGATTTGCAGGTTTGCAACCAATCATTTCCTAGCATAAAT
TTCATCATGACACGTTTCATTCTTCTGTGTTCATCTTGTACCAAAGCCATCAGGAATATCAATGCCCATTGGTCAATTGTTTCTGGTCAAGGATTTTTCATTGATTTACT
AATCTTATTTAATTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTGTTTTCTGTTTTTGTTTTTTATTCTTTGTGTTGTTTTAAACT
ATCAATAA
mRNA sequenceShow/hide mRNA sequence
ATGGCAAGCGCACCTGCTCAAATTCCTACCAGCTTCGGGCATGAGCTCAGAGCTTGTCTTCGTTGTCGTCTTGTCAAAACTTACGATCAGTTTCGAGAATCGGGCTGTGA
GAATTGCCCCTTCTTCAAGATGGACGAAGACCATGAGCGTGTTGTAGAATGCACAACCCCTAATTTTAATGGGATAATTTCAGTCATGGATCCTGCCAGAAGTTGGGCTG
CTAGATGGCTGCGAATTGGAAGATTCGTTCCAGGTTGTTACACTCTTGCAGTCTCAGAGGCTCTCCCCGAGGATTTGCAGGTTTGCAACCAATCATTTCCTAGCATAAAT
TTCATCATGACACGTTTCATTCTTCTGTGTTCATCTTGTACCAAAGCCATCAGGAATATCAATGCCCATTGGTCAATTGTTTCTGGTCAAGGATTTTTCATTGATTTACT
AATCTTATTTAATTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTGTTTTCTGTTTTTGTTTTTTATTCTTTGTGTTGTTTTAAACT
ATCAATAA
Protein sequenceShow/hide protein sequence
MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQVCNQSFPSIN
FIMTRFILLCSSCTKAIRNINAHWSIVSGQGFFIDLLILFNSLSLSLSLSLSLSLSLSLCFLFLFFILCVVLNYQ