CuGenDBv2

Gene ID	Cucsat.G15589
Organism	Cucumis sativus L. var. sativus cv. B10 (Cucumber (B10) v3)
Description	S4 RNA-binding domain-containing protein
Genome location	ctg2009:2575533..2581337
RNA-Seq Expression	Cucsat.G15589
Synteny	Cucsat.G15589
Gene Ontology terms	GO:0015074 - DNA integration (biological process) GO:0003723 - RNA binding (molecular function)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG6600381.1 hypothetical protein SDJN03_05614, partial [Cucurbita argyrosperma subsp. sororia]

4.80e-196

88.82

Show/hide

Query:  MAATATSIAALWSLRRAAQFSSFRRPLALNLNRLCFNEARFPSSP---LGTSGICQLVQAVKGDIDVLLNGVGDKGVIVDVKQILVMAKRSLSRREVLHT
        MAA   SI ALWSLRRAAQ SSFR PLA+NL ++ F+EARFPSSP   LG SG+CQLVQAVKGDIDVLLNGVGDKGVIVDVK ILVMAKRSLSRREVLHT
Subjt:  MAATATSIAALWSLRRAAQFSSFRRPLALNLNRLCFNEARFPSSP---LGTSGICQLVQAVKGDIDVLLNGVGDKGVIVDVKQILVMAKRSLSRREVLHT

Query:  NFLTPPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIAREKLGDIMLQEETGAQVVI
        NFLTPPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPD++SALSITGNF FH C+HGDFLG+ILGTGIAREKLGDI+LQEE GAQVVI
Subjt:  NFLTPPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIAREKLGDIMLQEETGAQVVI

Query:  VPELVDFLISSLRKVGNVTVSCTRIPLTALEYEPPKTKTFKTIEASLRVDAIASAGFKISRSKLVDLISSGDVRVNWTSITKNGTILKTGDIVSVSGKGR
        VPELVDFL+SSLRKVGNVTVSCTRIPLT L+YEPPKTKTFKTIEASLRVDA+ASAGFKISRSKLVD IS GDVRVNWT+ITKNGTILKTGDIVSVSGKGR
Subjt:  VPELVDFLISSLRKVGNVTVSCTRIPLTALEYEPPKTKTFKTIEASLRVDAIASAGFKISRSKLVDLISSGDVRVNWTSITKNGTILKTGDIVSVSGKGR

Query:  LKIGEINSTKKGKFAVELIRYV
        LKIGEIN TKKGKFA+ELI+YV
Subjt:  LKIGEINSTKKGKFAVELIRYV

XP_004146247.1 uncharacterized protein LOC101221944 [Cucumis sativus]

4.20e-219

100

Show/hide

Query:  MAATATSIAALWSLRRAAQFSSFRRPLALNLNRLCFNEARFPSSPLGTSGICQLVQAVKGDIDVLLNGVGDKGVIVDVKQILVMAKRSLSRREVLHTNFL
        MAATATSIAALWSLRRAAQFSSFRRPLALNLNRLCFNEARFPSSPLGTSGICQLVQAVKGDIDVLLNGVGDKGVIVDVKQILVMAKRSLSRREVLHTNFL
Subjt:  MAATATSIAALWSLRRAAQFSSFRRPLALNLNRLCFNEARFPSSPLGTSGICQLVQAVKGDIDVLLNGVGDKGVIVDVKQILVMAKRSLSRREVLHTNFL

Query:  TPPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIAREKLGDIMLQEETGAQVVIVPE
        TPPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIAREKLGDIMLQEETGAQVVIVPE
Subjt:  TPPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIAREKLGDIMLQEETGAQVVIVPE

Query:  LVDFLISSLRKVGNVTVSCTRIPLTALEYEPPKTKTFKTIEASLRVDAIASAGFKISRSKLVDLISSGDVRVNWTSITKNGTILKTGDIVSVSGKGRLKI
        LVDFLISSLRKVGNVTVSCTRIPLTALEYEPPKTKTFKTIEASLRVDAIASAGFKISRSKLVDLISSGDVRVNWTSITKNGTILKTGDIVSVSGKGRLKI
Subjt:  LVDFLISSLRKVGNVTVSCTRIPLTALEYEPPKTKTFKTIEASLRVDAIASAGFKISRSKLVDLISSGDVRVNWTSITKNGTILKTGDIVSVSGKGRLKI

Query:  GEINSTKKGKFAVELIRYV
        GEINSTKKGKFAVELIRYV
Subjt:  GEINSTKKGKFAVELIRYV

XP_008456024.1 PREDICTED: putative RNA-binding protein YlmH isoform X2 [Cucumis melo]

4.80e-209

95.3

Show/hide

Query:  MAATATSIAALWSLRRAAQFSSFRRPLALNLNRLCFNEARFPSSPLGTSGICQLVQAVKGDIDVLLNGVGDKGVIVDVKQILVMAKRSLSRREVLHTNFL
        MAAT T+I ALWSLR A+QFSSFRRPL +NLNRL F+E RFPSSPLGTSGICQLVQAVKGDIDVLLNGVGDKGVIVDVKQILVMAKRSLSRREVLHTNFL
Subjt:  MAATATSIAALWSLRRAAQFSSFRRPLALNLNRLCFNEARFPSSPLGTSGICQLVQAVKGDIDVLLNGVGDKGVIVDVKQILVMAKRSLSRREVLHTNFL

Query:  TPPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIAREKLGDIMLQEETGAQVVIVPE
        TPPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGH+DELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIAREKLGDI++QEETGAQVVIVPE
Subjt:  TPPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIAREKLGDIMLQEETGAQVVIVPE

Query:  LVDFLISSLRKVGNVTVSCTRIPLTALEYEPPKTKTFKTIEASLRVDAIASAGFKISRSKLVDLISSGDVRVNWTSITKNGTILKTGDIVSVSGKGRLKI
        LVDFLISSLRKVGNVTVSCTRIPLTALEYEPPKTKTFKTIEASLRVDA+ASAGFKISRSKLVDLISSGDVRVNWT ITKNGTILKTGDIVSVSGKGRLKI
Subjt:  LVDFLISSLRKVGNVTVSCTRIPLTALEYEPPKTKTFKTIEASLRVDAIASAGFKISRSKLVDLISSGDVRVNWTSITKNGTILKTGDIVSVSGKGRLKI

Query:  GEINSTKKGKFAVELIRYV
        GEINSTKKGKFAVELIRYV
Subjt:  GEINSTKKGKFAVELIRYV

XP_022142743.1 uncharacterized protein LOC111012786 isoform X1 [Momordica charantia]

5.67e-196

91.82

Show/hide

Query:  ATSIAALWSLRRAAQFSSFRRPLALNLNRLCFNEARFP---SSPLGTSGICQLVQAVKGDIDVLLNGVGDKGVIVDVKQILVMAKRSLSRREVLHTNFLT
        ATSI ALWSLRRAAQ SSFR PLALNL+   F++ARFP   SSP G+SGICQLVQAVKGDIDVLLNGVGDKGVIVDVK ILVMAKRSLSRREVLHTNFLT
Subjt:  ATSIAALWSLRRAAQFSSFRRPLALNLNRLCFNEARFP---SSPLGTSGICQLVQAVKGDIDVLLNGVGDKGVIVDVKQILVMAKRSLSRREVLHTNFLT

Query:  PPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIAREKLGDIMLQEETGAQVVIVPEL
        PPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIAREKLGDI+LQ E GAQVV+VPEL
Subjt:  PPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIAREKLGDIMLQEETGAQVVIVPEL

Query:  VDFLISSLRKVGNVTVSCTRIPLTALEYEPPKTKTFKTIEASLRVDAIASAGFKISRSKLVDLISSGDVRVNWTSITKNGTILKTGDIVSVSGKGRLKIG
        VDFLISSLRKVGNVTVSCTRIPLTAL+YEPPKTKTF TIEASLRVDAIASAGFKISRSKLVDLISSGDVRVNWT +TKNGT LKTGD+VSVSGKGRLKIG
Subjt:  VDFLISSLRKVGNVTVSCTRIPLTALEYEPPKTKTFKTIEASLRVDAIASAGFKISRSKLVDLISSGDVRVNWTSITKNGTILKTGDIVSVSGKGRLKIG

Query:  EINSTKKGKFAVELIRYV
        EINSTKKGKF+VELIRYV
Subjt:  EINSTKKGKFAVELIRYV

XP_038899605.1 putative RNA-binding protein YlmH [Benincasa hispida]

6.62e-198

91.51

Show/hide

Query:  ATSIAALWSLRRAAQFSSFRRPLALNLNRLCFNEARFPSSP---LGTSGICQLVQAVKGDIDVLLNGVGDKGVIVDVKQILVMAKRSLSRREVLHTNFLT
        ATSI A WSLRRAAQ SSFR PLA+NLN+L F+EARFPSSP   LG+SGICQLVQAVKGDIDVLLNGVGDKGVIVDVK ILVMAKRSLSRR VLHTNFLT
Subjt:  ATSIAALWSLRRAAQFSSFRRPLALNLNRLCFNEARFPSSP---LGTSGICQLVQAVKGDIDVLLNGVGDKGVIVDVKQILVMAKRSLSRREVLHTNFLT

Query:  PPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIAREKLGDIMLQEETGAQVVIVPEL
        PPVVKES+LA+QKLADVKAIAQGGYPEAERCRISVGHADEL SDPDI+SALSITGNF FHPCSHGDFLG+ILGTGIAREKLGDI+LQEE GAQVV+VPEL
Subjt:  PPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIAREKLGDIMLQEETGAQVVIVPEL

Query:  VDFLISSLRKVGNVTVSCTRIPLTALEYEPPKTKTFKTIEASLRVDAIASAGFKISRSKLVDLISSGDVRVNWTSITKNGTILKTGDIVSVSGKGRLKIG
        VDFL SSLRKVGNVTVSCTRIPLTAL+YEPPKTKTFKTIEASLRVDA+ASAGFKISRSKLVDLISSGDVRVNWT ITKNGTILKTGDIVSVSGKGRLKIG
Subjt:  VDFLISSLRKVGNVTVSCTRIPLTALEYEPPKTKTFKTIEASLRVDAIASAGFKISRSKLVDLISSGDVRVNWTSITKNGTILKTGDIVSVSGKGRLKIG

Query:  EINSTKKGKFAVELIRYV
        EINSTKKGKFAVELIRYV
Subjt:  EINSTKKGKFAVELIRYV

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LC56 S4 RNA-binding domain-containing protein

2.03e-219

100

Show/hide

Query:  MAATATSIAALWSLRRAAQFSSFRRPLALNLNRLCFNEARFPSSPLGTSGICQLVQAVKGDIDVLLNGVGDKGVIVDVKQILVMAKRSLSRREVLHTNFL
        MAATATSIAALWSLRRAAQFSSFRRPLALNLNRLCFNEARFPSSPLGTSGICQLVQAVKGDIDVLLNGVGDKGVIVDVKQILVMAKRSLSRREVLHTNFL
Subjt:  MAATATSIAALWSLRRAAQFSSFRRPLALNLNRLCFNEARFPSSPLGTSGICQLVQAVKGDIDVLLNGVGDKGVIVDVKQILVMAKRSLSRREVLHTNFL

Query:  TPPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIAREKLGDIMLQEETGAQVVIVPE
        TPPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIAREKLGDIMLQEETGAQVVIVPE
Subjt:  TPPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIAREKLGDIMLQEETGAQVVIVPE

Query:  LVDFLISSLRKVGNVTVSCTRIPLTALEYEPPKTKTFKTIEASLRVDAIASAGFKISRSKLVDLISSGDVRVNWTSITKNGTILKTGDIVSVSGKGRLKI
        LVDFLISSLRKVGNVTVSCTRIPLTALEYEPPKTKTFKTIEASLRVDAIASAGFKISRSKLVDLISSGDVRVNWTSITKNGTILKTGDIVSVSGKGRLKI
Subjt:  LVDFLISSLRKVGNVTVSCTRIPLTALEYEPPKTKTFKTIEASLRVDAIASAGFKISRSKLVDLISSGDVRVNWTSITKNGTILKTGDIVSVSGKGRLKI

Query:  GEINSTKKGKFAVELIRYV
        GEINSTKKGKFAVELIRYV
Subjt:  GEINSTKKGKFAVELIRYV

A0A1S3C3I2 putative RNA-binding protein YlmH isoform X2

2.33e-209

95.3

Show/hide

Query:  MAATATSIAALWSLRRAAQFSSFRRPLALNLNRLCFNEARFPSSPLGTSGICQLVQAVKGDIDVLLNGVGDKGVIVDVKQILVMAKRSLSRREVLHTNFL
        MAAT T+I ALWSLR A+QFSSFRRPL +NLNRL F+E RFPSSPLGTSGICQLVQAVKGDIDVLLNGVGDKGVIVDVKQILVMAKRSLSRREVLHTNFL
Subjt:  MAATATSIAALWSLRRAAQFSSFRRPLALNLNRLCFNEARFPSSPLGTSGICQLVQAVKGDIDVLLNGVGDKGVIVDVKQILVMAKRSLSRREVLHTNFL

Query:  TPPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIAREKLGDIMLQEETGAQVVIVPE
        TPPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGH+DELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIAREKLGDI++QEETGAQVVIVPE
Subjt:  TPPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIAREKLGDIMLQEETGAQVVIVPE

Query:  LVDFLISSLRKVGNVTVSCTRIPLTALEYEPPKTKTFKTIEASLRVDAIASAGFKISRSKLVDLISSGDVRVNWTSITKNGTILKTGDIVSVSGKGRLKI
        LVDFLISSLRKVGNVTVSCTRIPLTALEYEPPKTKTFKTIEASLRVDA+ASAGFKISRSKLVDLISSGDVRVNWT ITKNGTILKTGDIVSVSGKGRLKI
Subjt:  LVDFLISSLRKVGNVTVSCTRIPLTALEYEPPKTKTFKTIEASLRVDAIASAGFKISRSKLVDLISSGDVRVNWTSITKNGTILKTGDIVSVSGKGRLKI

Query:  GEINSTKKGKFAVELIRYV
        GEINSTKKGKFAVELIRYV
Subjt:  GEINSTKKGKFAVELIRYV

A0A6J1CP18 uncharacterized protein LOC111012786 isoform X1

2.74e-196

91.82

Show/hide

Query:  ATSIAALWSLRRAAQFSSFRRPLALNLNRLCFNEARFP---SSPLGTSGICQLVQAVKGDIDVLLNGVGDKGVIVDVKQILVMAKRSLSRREVLHTNFLT
        ATSI ALWSLRRAAQ SSFR PLALNL+   F++ARFP   SSP G+SGICQLVQAVKGDIDVLLNGVGDKGVIVDVK ILVMAKRSLSRREVLHTNFLT
Subjt:  ATSIAALWSLRRAAQFSSFRRPLALNLNRLCFNEARFP---SSPLGTSGICQLVQAVKGDIDVLLNGVGDKGVIVDVKQILVMAKRSLSRREVLHTNFLT

Query:  PPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIAREKLGDIMLQEETGAQVVIVPEL
        PPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIAREKLGDI+LQ E GAQVV+VPEL
Subjt:  PPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIAREKLGDIMLQEETGAQVVIVPEL

Query:  VDFLISSLRKVGNVTVSCTRIPLTALEYEPPKTKTFKTIEASLRVDAIASAGFKISRSKLVDLISSGDVRVNWTSITKNGTILKTGDIVSVSGKGRLKIG
        VDFLISSLRKVGNVTVSCTRIPLTAL+YEPPKTKTF TIEASLRVDAIASAGFKISRSKLVDLISSGDVRVNWT +TKNGT LKTGD+VSVSGKGRLKIG
Subjt:  VDFLISSLRKVGNVTVSCTRIPLTALEYEPPKTKTFKTIEASLRVDAIASAGFKISRSKLVDLISSGDVRVNWTSITKNGTILKTGDIVSVSGKGRLKIG

Query:  EINSTKKGKFAVELIRYV
        EINSTKKGKF+VELIRYV
Subjt:  EINSTKKGKFAVELIRYV

A0A6J1FU11 uncharacterized protein LOC111446880 isoform X2

2.22e-194

88.2

Show/hide

Query:  MAATATSIAALWSLRRAAQFSSFRRPLALNLNRLCFNEARFPSSP---LGTSGICQLVQAVKGDIDVLLNGVGDKGVIVDVKQILVMAKRSLSRREVLHT
        MAA   SI ALWSLRRAA+ SSFR PLA+NL ++ F+EARFPSSP   LG SG+CQLVQAVKGDIDVLLNGVGDKGVIVDVK ILVMAKRSLSRREVLHT
Subjt:  MAATATSIAALWSLRRAAQFSSFRRPLALNLNRLCFNEARFPSSP---LGTSGICQLVQAVKGDIDVLLNGVGDKGVIVDVKQILVMAKRSLSRREVLHT

Query:  NFLTPPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIAREKLGDIMLQEETGAQVVI
        NFLTPPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPD++SALSITGNF F  C+HGDFLG+ILGTGIAREKLGDI+LQEE GAQVVI
Subjt:  NFLTPPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIAREKLGDIMLQEETGAQVVI

Query:  VPELVDFLISSLRKVGNVTVSCTRIPLTALEYEPPKTKTFKTIEASLRVDAIASAGFKISRSKLVDLISSGDVRVNWTSITKNGTILKTGDIVSVSGKGR
        VPELVDFL+SSLRKVGNVTVSCTRIPLT L+YEPPKTKTFKTIEASLRVDA+ASAGFKISRSKLVD IS GDVRVNWT+ITKNGTILKTGDIVSVSGKGR
Subjt:  VPELVDFLISSLRKVGNVTVSCTRIPLTALEYEPPKTKTFKTIEASLRVDAIASAGFKISRSKLVDLISSGDVRVNWTSITKNGTILKTGDIVSVSGKGR

Query:  LKIGEINSTKKGKFAVELIRYV
        LKIGEIN TKKGKFA+ELI+YV
Subjt:  LKIGEINSTKKGKFAVELIRYV

A0A6J1J103 uncharacterized protein LOC111480897 isoform X1

2.71e-195

88.82

Show/hide

Query:  MAATATSIAALWSLRRAAQFSSFRRPLALNLNRLCFNEARFP---SSPLGTSGICQLVQAVKGDIDVLLNGVGDKGVIVDVKQILVMAKRSLSRREVLHT
        MAA   SI ALWSLRRAAQ SS R PLA+NL+++ F+EARFP   SSPLG+SG+CQLVQAVKGDIDVLLNGVGDKGVIVDVK ILVMAKRSLSRREVLHT
Subjt:  MAATATSIAALWSLRRAAQFSSFRRPLALNLNRLCFNEARFP---SSPLGTSGICQLVQAVKGDIDVLLNGVGDKGVIVDVKQILVMAKRSLSRREVLHT

Query:  NFLTPPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIAREKLGDIMLQEETGAQVVI
        NFLTPPVVKESMLAI+KLADVKAIAQGGYPEAERCRISVGHADELTSDPD++SALSITGNF FH C+HGDFLG+ILGTGIAREKLGDI+LQEE GAQVVI
Subjt:  NFLTPPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIAREKLGDIMLQEETGAQVVI

Query:  VPELVDFLISSLRKVGNVTVSCTRIPLTALEYEPPKTKTFKTIEASLRVDAIASAGFKISRSKLVDLISSGDVRVNWTSITKNGTILKTGDIVSVSGKGR
        VPELVDFL+SSL KVGNVTVSCTRIPLT L+YEPPKTKTFKTIEASLRVDA+ASAGFKISRSKLVD ISSGDVRVNWT+ITKNGTILKTGDIVSVSGKGR
Subjt:  VPELVDFLISSLRKVGNVTVSCTRIPLTALEYEPPKTKTFKTIEASLRVDAIASAGFKISRSKLVDLISSGDVRVNWTSITKNGTILKTGDIVSVSGKGR

Query:  LKIGEINSTKKGKFAVELIRYV
        LKIGEIN TKKGKFAVELIRYV
Subjt:  LKIGEINSTKKGKFAVELIRYV

SwissProt top hits

e value

%identity

Alignment

P71020 Putative RNA-binding protein YlmH

1.1e-18

30.67

Show/hide

Query:  TNFLTPPVVKESML--AIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDI-ISALSITGNFTFHPCSHGDFLGSILGTGIAREKLGDIMLQEETGA
        T+FL P   +E ++  A+   ADV     GGY  AER R  +        + D  + A ++     F    H   LG+++G G+ R+K GDI+   ET  
Subjt:  TNFLTPPVVKESML--AIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDI-ISALSITGNFTFHPCSHGDFLGSILGTGIAREKLGDIMLQEETGA

Query:  QVVIVPELVDFLISSLRKVGNVTVSCTRIPLTALEYEPPKTKTFKTIEASLRVDAIASAGFKISRSKLVDLISSGDVRVNWTSITKNGTILKTGDIVSVS
        Q+++  +  DF+ + L + G   VS  +I L+ L       +      +SLR+DA+ ++  + SR K   L+ +G V+VNW  +     I+  GD++S+ 
Subjt:  QVVIVPELVDFLISSLRKVGNVTVSCTRIPLTALEYEPPKTKTFKTIEASLRVDAIASAGFKISRSKLVDLISSGDVRVNWTSITKNGTILKTGDIVSVS

Query:  GKGRLKIGEI-NSTKKGKFAVELIR
        G GR  + +I   TKK K+ V   R
Subjt:  GKGRLKIGEI-NSTKKGKFAVELIR

Arabidopsis top hits

e value

%identity

Alignment

AT1G53120.1 RNA-binding S4 domain-containing protein

3.8e-118

68.55

Show/hide

Query:  TSIAALWSLRRAAQFSSFRRPLALNLNR--LCFNEARFPSSPLGTSGI--CQLVQAVKGDIDVLLNGVGDKGVIVDVKQILVMAKRSLSRREVLHTNFLT
        TS+A  W + R A F S      L+ N+  L  N +   S PL  S +  C   +A+KGD+D LL GVGD+ V  +VKQIL MA+R+ S+REVLHT+FLT
Subjt:  TSIAALWSLRRAAQFSSFRRPLALNLNR--LCFNEARFPSSPLGTSGI--CQLVQAVKGDIDVLLNGVGDKGVIVDVKQILVMAKRSLSRREVLHTNFLT

Query:  PPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIAREKLGDIMLQEETGAQVVIVPEL
        PP+VKES+  ++K ADVK +AQGGYPEAERCRIS+GH D LTSDPDI++ALSITGNF F PCSHGDFLG+ILGTGI+REKLGDI++QEE GAQV+IVPEL
Subjt:  PPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIAREKLGDIMLQEETGAQVVIVPEL

Query:  VDFLISSLRKVGNVTVSCTRIPLTALEYEPPKTKTFKTIEASLRVDAIASAGFKISRSKLVDLISSGDVRVNWTSITKNGTILKTGDIVSVSGKGRLKIG
        VDF++++L KVGNV V+C++IPL ALEYEPP+T +FKT+EASLR+DA+ASAGFKISRSKLVDLISS DVRVNW ++TKNGTI+KTGD+VSVSGKGRLKIG
Subjt:  VDFLISSLRKVGNVTVSCTRIPLTALEYEPPKTKTFKTIEASLRVDAIASAGFKISRSKLVDLISSGDVRVNWTSITKNGTILKTGDIVSVSGKGRLKIG

Query:  EINSTKKGKFAVELIRYV
        EIN TKKGKFAVE+IRY+
Subjt:  EINSTKKGKFAVELIRYV

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGCCGCAACGGCAACGAGCATTGCAGCTCTGTGGAGTTTAAGAAGGGCGGCTCAGTTTTCGAGTTTCCGAAGACCCCTTGCCCTTAATCTCAATAGGCTCTGCTTTAA
CGAGGCCCGGTTTCCCTCTTCTCCTCTGGGGACCTCAGGAATATGCCAATTAGTGCAAGCTGTAAAGGGAGATATTGATGTTTTACTCAATGGAGTTGGAGATAAAGGTG
TTATTGTAGACGTGAAACAAATTCTTGTGATGGCTAAACGTTCATTATCAAGACGAGAAGTTCTCCATACAAACTTTCTTACCCCACCTGTGGTGAAAGAGTCAATGCTA
GCTATACAAAAATTAGCTGACGTGAAAGCAATAGCTCAGGGAGGATACCCAGAGGCAGAGCGCTGCCGGATTTCTGTTGGTCATGCAGATGAACTAACAAGTGATCCAGA
CATAATTTCAGCATTGAGTATCACAGGAAATTTTACGTTTCACCCTTGTTCACATGGGGACTTCCTTGGATCAATTCTTGGTACTGGCATTGCTAGAGAAAAGCTTGGTG
ATATCATGCTCCAGGAAGAAACGGGAGCTCAAGTAGTCATTGTTCCAGAGCTTGTTGACTTCCTGATATCATCACTGCGCAAGGTTGGCAATGTCACAGTTTCTTGTACG
AGGATTCCATTGACAGCTCTTGAATATGAACCACCGAAGACTAAGACATTTAAAACCATTGAGGCATCTCTTAGGGTAGATGCTATAGCAAGTGCTGGATTCAAGATTTC
AAGATCTAAACTAGTGGATTTAATCAGTAGCGGGGATGTTCGTGTCAATTGGACGTCAATTACAAAAAATGGAACCATTTTAAAGACTGGCGATATTGTTTCTGTTAGTG
GCAAAGGGAGACTAAAGATTGGAGAAATAAATTCAACAAAAAAGGGAAAATTTGCTGTTGAGCTTATCAGATATGTGTAA

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MAATATSIAALWSLRRAAQFSSFRRPLALNLNRLCFNEARFPSSPLGTSGICQLVQAVKGDIDVLLNGVGDKGVIVDVKQILVMAKRSLSRREVLHTNFLTPPVVKESML
AIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIAREKLGDIMLQEETGAQVVIVPELVDFLISSLRKVGNVTVSCT
RIPLTALEYEPPKTKTFKTIEASLRVDAIASAGFKISRSKLVDLISSGDVRVNWTSITKNGTILKTGDIVSVSGKGRLKIGEINSTKKGKFAVELIRYV

Cucsat.G15589 (gene) of Cucumber (B10) v3 genome