; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cucsat.G15617 (gene) of Cucumber (B10) v3 genome

Gene IDCucsat.G15617
OrganismCucumis sativus L. var. sativus cv. B10 (Cucumber (B10) v3)
DescriptionBED-type domain-containing protein
Genome locationctg2009:3322396..3324981
RNA-Seq ExpressionCucsat.G15617
SyntenyCucsat.G15617
Gene Ontology termsNA
InterPro domainsIPR012337 - Ribonuclease H-like superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG5536214.1 hypothetical protein RHGRI_023859 [Rhododendron griersonianum]1.80e-4361.79Show/hide
Query:  MVDILLRKLDLRTLWLRESLFHIRCCAHILNLIVKDGLTVVSDSIENIRGMVHFWTISPKRKEKFEEGVLQLQISCTKKLCLDCVTRWNSTYVMLKTALE
        MV +LL K D   LW   SLFH+RC AHILNLIVKDGL V+ ++IE IR  V FWT +PKR+EKFEE + QL+I  TKKL LDC TRWNSTY+ML+TA+E
Subjt:  MVDILLRKLDLRTLWLRESLFHIRCCAHILNLIVKDGLTVVSDSIENIRGMVHFWTISPKRKEKFEEGVLQLQISCTKKLCLDCVTRWNSTYVMLKTALE

Query:  YKDVFTRLKQHEPLYNCLPLETD
        YKD F+RLK  +  Y  +P E D
Subjt:  YKDVFTRLKQHEPLYNCLPLETD

KAG5548993.1 hypothetical protein RHGRI_014390 [Rhododendron griersonianum]5.75e-4462.6Show/hide
Query:  MVDILLRKLDLRTLWLRESLFHIRCCAHILNLIVKDGLTVVSDSIENIRGMVHFWTISPKRKEKFEEGVLQLQISCTKKLCLDCVTRWNSTYVMLKTALE
        MV +LL K D   LW   SLFH+RC AHILNLIVKDGL V+ ++IE IR  V FWT +PKR+EKFEE + QL+I  TKKL LDC TRWNSTY+ML+TA+E
Subjt:  MVDILLRKLDLRTLWLRESLFHIRCCAHILNLIVKDGLTVVSDSIENIRGMVHFWTISPKRKEKFEEGVLQLQISCTKKLCLDCVTRWNSTYVMLKTALE

Query:  YKDVFTRLKQHEPLYNCLPLETD
        YKD F+RLK H+  Y  +P E D
Subjt:  YKDVFTRLKQHEPLYNCLPLETD

KAG5552225.1 hypothetical protein RHGRI_010340 [Rhododendron griersonianum]4.89e-4361.79Show/hide
Query:  MVDILLRKLDLRTLWLRESLFHIRCCAHILNLIVKDGLTVVSDSIENIRGMVHFWTISPKRKEKFEEGVLQLQISCTKKLCLDCVTRWNSTYVMLKTALE
        MV +LL K D   LW   SLFH+RC AHILNLIVKDGL V+ ++IE IR  V FWT +PKR+EKFEE + QL+I  TKKL LDC TRWNSTY+ML+TA+E
Subjt:  MVDILLRKLDLRTLWLRESLFHIRCCAHILNLIVKDGLTVVSDSIENIRGMVHFWTISPKRKEKFEEGVLQLQISCTKKLCLDCVTRWNSTYVMLKTALE

Query:  YKDVFTRLKQHEPLYNCLPLETD
        YKD F+RLK  +  Y  +P E D
Subjt:  YKDVFTRLKQHEPLYNCLPLETD

KZV22165.1 hypothetical protein F511_33795 [Dorcoceras hygrometricum]5.16e-4361.79Show/hide
Query:  MVDILLRKLDLRTLWLRESLFHIRCCAHILNLIVKDGLTVVSDSIENIRGMVHFWTISPKRKEKFEEGVLQLQISCTKKLCLDCVTRWNSTYVMLKTALE
        M++ +L KL   +L L   LFH+RCCAHILNLIV+DGL ++S SIE IR  V FWT +PKR EKF E   QL++  TKKL LDC TRWNSTY+ML TALE
Subjt:  MVDILLRKLDLRTLWLRESLFHIRCCAHILNLIVKDGLTVVSDSIENIRGMVHFWTISPKRKEKFEEGVLQLQISCTKKLCLDCVTRWNSTYVMLKTALE

Query:  YKDVFTRLKQHEPLYNCLPLETD
        YKDVF+RLK  EPLY  +P + D
Subjt:  YKDVFTRLKQHEPLYNCLPLETD

XP_023875656.1 zinc finger BED domain-containing protein RICESLEEPER 2-like [Quercus suber]1.41e-4358.54Show/hide
Query:  MVDILLRKLDLRTLWLRESLFHIRCCAHILNLIVKDGLTVVSDSIENIRGMVHFWTISPKRKEKFEEGVLQLQISCTKKLCLDCVTRWNSTYVMLKTALE
        M+ +LL KLD  +L L  S+ H+RC AHILNLIV+DGL+++ D IE IR  V +WT SPKR++KF+E   QL++ CTK+L LDC TRWNSTY+ML TAL 
Subjt:  MVDILLRKLDLRTLWLRESLFHIRCCAHILNLIVKDGLTVVSDSIENIRGMVHFWTISPKRKEKFEEGVLQLQISCTKKLCLDCVTRWNSTYVMLKTALE

Query:  YKDVFTRLKQHEPLYNCLPLETD
        YKDVF+RL + E  Y CLP + D
Subjt:  YKDVFTRLKQHEPLYNCLPLETD

TrEMBL top hitse value%identityAlignment
A0A151SP64 Putative AC transposase4.67e-4263.03Show/hide
Query:  MVDILLRKLDLRTLWLRESLFHIRCCAHILNLIVKDGLTVVSDSIENIRGMVHFWTISPKRKEKFEEGVLQLQISCTKKLCLDCVTRWNSTYVMLKTALE
        M++ +  KL L TL    SLFH+RCCAHILNLIVKDGL VV D IE IR  V +WT +PKRKEKFEE   QL+I   K L LDC TRWNSTY ML+ A+ 
Subjt:  MVDILLRKLDLRTLWLRESLFHIRCCAHILNLIVKDGLTVVSDSIENIRGMVHFWTISPKRKEKFEEGVLQLQISCTKKLCLDCVTRWNSTYVMLKTALE

Query:  YKDVFTRLKQHEPLYNCLP
        Y+DVF+RLKQ E  Y CLP
Subjt:  YKDVFTRLKQHEPLYNCLP

A0A2Z7AK25 Uncharacterized protein2.50e-4361.79Show/hide
Query:  MVDILLRKLDLRTLWLRESLFHIRCCAHILNLIVKDGLTVVSDSIENIRGMVHFWTISPKRKEKFEEGVLQLQISCTKKLCLDCVTRWNSTYVMLKTALE
        M++ +L KL   +L L   LFH+RCCAHILNLIV+DGL ++S SIE IR  V FWT +PKR EKF E   QL++  TKKL LDC TRWNSTY+ML TALE
Subjt:  MVDILLRKLDLRTLWLRESLFHIRCCAHILNLIVKDGLTVVSDSIENIRGMVHFWTISPKRKEKFEEGVLQLQISCTKKLCLDCVTRWNSTYVMLKTALE

Query:  YKDVFTRLKQHEPLYNCLPLETD
        YKDVF+RLK  EPLY  +P + D
Subjt:  YKDVFTRLKQHEPLYNCLPLETD

A0A5B6YZD8 Uncharacterized protein (Fragment)6.50e-4261.48Show/hide
Query:  VDILLRKLDLRTLWLRESLFHIRCCAHILNLIVKDGLTVVSDSIENIRGMVHFWTISPKRKEKFEEGVLQLQISCTKKLCLDCVTRWNSTYVMLKTALEY
        ++IL+ KLD  +L+L+  + H+RCCAHILNLIVKDGL V+   IE IR  V FWT +  R E FEE   Q+++SCTKKLCLDC TRWNSTY ML+TA  Y
Subjt:  VDILLRKLDLRTLWLRESLFHIRCCAHILNLIVKDGLTVVSDSIENIRGMVHFWTISPKRKEKFEEGVLQLQISCTKKLCLDCVTRWNSTYVMLKTALEY

Query:  KDVFTRLKQHEPLYNCLPLETD
        KDVF RLKQ E LY  LP E D
Subjt:  KDVFTRLKQHEPLYNCLPLETD

A0A5B6YZU5 Uncharacterized protein3.26e-4263.11Show/hide
Query:  VDILLRKLDLRTLWLRESLFHIRCCAHILNLIVKDGLTVVSDSIENIRGMVHFWTISPKRKEKFEEGVLQLQISCTKKLCLDCVTRWNSTYVMLKTALEY
        +D LL KLD  +L L   + H+RCCAH LNLIVKDGL V+ D IE IR  + FWT +P R E FEE V QL+IS TKKLCLDC TRW STY ML+TA+ Y
Subjt:  VDILLRKLDLRTLWLRESLFHIRCCAHILNLIVKDGLTVVSDSIENIRGMVHFWTISPKRKEKFEEGVLQLQISCTKKLCLDCVTRWNSTYVMLKTALEY

Query:  KDVFTRLKQHEPLYNCLPLETD
        KDVF +LKQHE LY  LP E D
Subjt:  KDVFTRLKQHEPLYNCLPLETD

A0A7N2N117 BED-type domain-containing protein2.39e-4360.16Show/hide
Query:  MVDILLRKLDLRTLWLRESLFHIRCCAHILNLIVKDGLTVVSDSIENIRGMVHFWTISPKRKEKFEEGVLQLQISCTKKLCLDCVTRWNSTYVMLKTALE
        M+ +LL K D  +L L  S+ HIRC AHILNLIV+DGL+++ D IE IR  V +WT SPKR++KFEE   QL+I CTK+L LDC TRWNSTY+ML TAL 
Subjt:  MVDILLRKLDLRTLWLRESLFHIRCCAHILNLIVKDGLTVVSDSIENIRGMVHFWTISPKRKEKFEEGVLQLQISCTKKLCLDCVTRWNSTYVMLKTALE

Query:  YKDVFTRLKQHEPLYNCLPLETD
        YKDVF+RL + E  Y CLP + D
Subjt:  YKDVFTRLKQHEPLYNCLPLETD

SwissProt top hitse value%identityAlignment
B9FJG3 Zinc finger BED domain-containing protein RICESLEEPER 11.2e-1945.45Show/hide
Query:  LWLRESLFHIRCCAHILNLIVKDGLTVVSDSIENIRGMVHFWTISPKRKEKFEEGVLQLQISCTKKLCLDCVTRWNSTYVMLKTALEYKDVFTRLKQHEP
        L L+  LF +RC AHILN + +D +  +   I NIR  + F   SP  +EKF E  LQL+I  TK LCLD  T+WN+TY+ML  AL+YK  F+ L+  + 
Subjt:  LWLRESLFHIRCCAHILNLIVKDGLTVVSDSIENIRGMVHFWTISPKRKEKFEEGVLQLQISCTKKLCLDCVTRWNSTYVMLKTALEYKDVFTRLKQHEP

Query:  LYNCLPLETD
         YN  P   D
Subjt:  LYNCLPLETD

P03010 Putative AC9 transposase7.8e-1642.57Show/hide
Query:  SLFHIRCCAHILNLIVKDGLTVVSDSIENIRGMVHFWTISPKRKEKFEEGVLQLQISCTKKLCLDCVTRWNSTYVMLKTALEYKDVFTRLKQHEP-LYNC
        + FH+RC  HILNL+ KDGL V++ +IE I+ +V     SP + E+  +   +  +  +K +  D  TRWNSTY+ML+ AL YK    RLK  +P  Y C
Subjt:  SLFHIRCCAHILNLIVKDGLTVVSDSIENIRGMVHFWTISPKRKEKFEEGVLQLQISCTKKLCLDCVTRWNSTYVMLKTALEYKDVFTRLKQHEP-LYNC

Query:  L
        L
Subjt:  L

P08770 Putative AC transposase1.7e-1542.11Show/hide
Query:  SLFHIRCCAHILNLIVKDGLTVVSDSIENIRGMVHFWTISPKRKEKFEEGVLQLQISCTKKLCLDCVTRWNSTYVMLKTALEYKDVFTRLKQHEP
        + FH+RC  HILNL+ KDGL V++ +IE I+ +V     SP + E+  +   +  +  +K +  D  TRWNSTY+ML+ AL YK    RLK  +P
Subjt:  SLFHIRCCAHILNLIVKDGLTVVSDSIENIRGMVHFWTISPKRKEKFEEGVLQLQISCTKKLCLDCVTRWNSTYVMLKTALEYKDVFTRLKQHEP

Q6AVI0 Zinc finger BED domain-containing protein RICESLEEPER 21.4e-2046.36Show/hide
Query:  LWLRESLFHIRCCAHILNLIVKDGLTVVSDSIENIRGMVHFWTISPKRKEKFEEGVLQLQISCTKKLCLDCVTRWNSTYVMLKTALEYKDVFTRLKQHEP
        L L+  LF +RC AHILN + +D +  +   I NIR  + F   SP R+EKF E  LQL+I  TK LCLD  T+WN+TY+ML  AL+YK  F+ L+  + 
Subjt:  LWLRESLFHIRCCAHILNLIVKDGLTVVSDSIENIRGMVHFWTISPKRKEKFEEGVLQLQISCTKKLCLDCVTRWNSTYVMLKTALEYKDVFTRLKQHEP

Query:  LYNCLPLETD
         YN  P   D
Subjt:  LYNCLPLETD

Q75HY5 Zinc finger BED domain-containing protein RICESLEEPER 34.1e-1739.84Show/hide
Query:  MVDILLRKLDLRTLWLRESLFHIRCCAHILNLIVKDGLTVVSDSIENIRGMVHFWTISPKRKEKFEEGVLQLQISCTKKLCLDCVTRWNSTYVMLKTALE
        M++ L  K D   + ++  LF +RC AHILN + +D +  V   I +IR  + F   S   ++KF E  LQL+I   K LCLD  T+WN+TY+ML  AL+
Subjt:  MVDILLRKLDLRTLWLRESLFHIRCCAHILNLIVKDGLTVVSDSIENIRGMVHFWTISPKRKEKFEEGVLQLQISCTKKLCLDCVTRWNSTYVMLKTALE

Query:  YKDVFTRLKQHEPLYNCLPLETD
        Y+ VF  L+  +  YN  P   D
Subjt:  YKDVFTRLKQHEPLYNCLPLETD

Arabidopsis top hitse value%identityAlignment
AT3G42170.1 BED zinc finger ;hAT family dimerisation domain7.8e-1139.39Show/hide
Query:  CCAHILNLIVKDGLTVVSDSIENIRGMVHFWTISPKRKEKFEEGVLQLQISCTKKLCLDCVTRWNSTYVMLKTALEYKDVFTRLKQHEPLYNCLPLETD
        C A     + KD L    D I+NIR  V     S   +E+F E   QLQ+   K L LD  T+WN+TY+ML  A E K+VF+ L   +P Y   P   D
Subjt:  CCAHILNLIVKDGLTVVSDSIENIRGMVHFWTISPKRKEKFEEGVLQLQISCTKKLCLDCVTRWNSTYVMLKTALEYKDVFTRLKQHEPLYNCLPLETD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTGACATTTTATTAAGAAAGTTAGATTTGAGGACACTTTGGTTGCGTGAAAGTTTGTTTCATATTCGTTGTTGTGCACACATTTTGAATTTGATAGTGAAAGATGG
TTTGACTGTAGTTTCTGATAGTATAGAGAATATTAGAGGTATGGTTCATTTTTGGACCATTTCTCCAAAAAGGAAAGAAAAATTTGAGGAAGGAGTTCTCCAATTACAAA
TTTCATGCACTAAAAAACTATGCCTTGATTGTGTTACAAGATGGAATTCAACATATGTGATGCTCAAAACTGCTTTGGAGTACAAGGATGTGTTTACTCGTCTAAAACAA
CATGAACCACTATACAATTGTCTTCCTTTAGAGACAGATTGA
mRNA sequenceShow/hide mRNA sequence
ATGGTTGACATTTTATTAAGAAAGTTAGATTTGAGGACACTTTGGTTGCGTGAAAGTTTGTTTCATATTCGTTGTTGTGCACACATTTTGAATTTGATAGTGAAAGATGG
TTTGACTGTAGTTTCTGATAGTATAGAGAATATTAGAGGTATGGTTCATTTTTGGACCATTTCTCCAAAAAGGAAAGAAAAATTTGAGGAAGGAGTTCTCCAATTACAAA
TTTCATGCACTAAAAAACTATGCCTTGATTGTGTTACAAGATGGAATTCAACATATGTGATGCTCAAAACTGCTTTGGAGTACAAGGATGTGTTTACTCGTCTAAAACAA
CATGAACCACTATACAATTGTCTTCCTTTAGAGACAGATTGA
Protein sequenceShow/hide protein sequence
MVDILLRKLDLRTLWLRESLFHIRCCAHILNLIVKDGLTVVSDSIENIRGMVHFWTISPKRKEKFEEGVLQLQISCTKKLCLDCVTRWNSTYVMLKTALEYKDVFTRLKQ
HEPLYNCLPLETD