CuGenDBv2

Gene ID	Cucsat.G15646
Organism	Cucumis sativus L. var. sativus cv. B10 (Cucumber (B10) v3)
Description	RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H-like protein
Genome location	ctg2009:4541202..4564373
RNA-Seq Expression	Cucsat.G15646
Synteny	Cucsat.G15646
Gene Ontology terms	GO:0006278 - RNA-dependent DNA biosynthetic process (biological process) GO:0006310 - DNA recombination (biological process) GO:0015074 - DNA integration (biological process) GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process) GO:0005634 - nucleus (cellular component) GO:0030430 - host cell cytoplasm (cellular component) GO:0003723 - RNA binding (molecular function) GO:0003887 - DNA-directed DNA polymerase activity (molecular function) GO:0003964 - RNA-directed DNA polymerase activity (molecular function) GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0042503.1 uncharacterized protein E6C27_scaffold246G00570 [Cucumis melo var. makuwa]

1.92e-44

72.22

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Query:  ASKKPDVNNNQLLKHENSKVNIVNCLVEKCKNEVHEMMMPLEALFKDIFEAGYVSYEYLDSNIRYEEYDESKHCIFHQGVIGHVVQQCCKFRSKVQP-MD
        +S+KP+VN N    HEN+KVN+V+ LVEKCKNEVHE+MMP+E LF+ +FEAGYVS +YLD NI+YE YDES+HCIFHQGV+GHVVQQC KFRSKVQ  MD
Subjt:  ASKKPDVNNNQLLKHENSKVNIVNCLVEKCKNEVHEMMMPLEALFKDIFEAGYVSYEYLDSNIRYEEYDESKHCIFHQGVIGHVVQQCCKFRSKVQP-MD

Query:  SKILIVQR
        SKIL V R
Subjt:  SKILIVQR

KAA0058347.1 RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H-like protein [Cucumis melo var. makuwa]

8.10e-44

73.15

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Query:  ASKKPDVNNNQLLKHENSKVNIVNCLVEKCKNEVHEMMMPLEALFKDIFEAGYVSYEYLDSNIRYEEYDESKHCIFHQGVIGHVVQQCCKFRSKVQP-MD
        + +KP+VN N L   EN KVN V+  VEK KNEVHE+MMP+EALF+D+FEAGYVS EYLD NIRYEEYDESKHCIFHQGV GHV QQC KF+SKVQ  MD
Subjt:  ASKKPDVNNNQLLKHENSKVNIVNCLVEKCKNEVHEMMMPLEALFKDIFEAGYVSYEYLDSNIRYEEYDESKHCIFHQGVIGHVVQQCCKFRSKVQP-MD

Query:  SKILIVQR
        SKIL V R
Subjt:  SKILIVQR

KAA0060421.1 uncharacterized protein E6C27_scaffold22G002400 [Cucumis melo var. makuwa]

1.23e-43

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Query:  ASKKPDVNNNQLLKHENSKVNIVNCLVEKCKNEVHEMMMPLEALFKDIFEAGYVSYEYLDSNIRYEEYDESKHCIFHQGVIGHVVQQCCKFRSKVQP-MD
        + +KP+VN N L  HEN KVN V+ LVEKCKNEVHE++MP+EALF+D+FEAGYVS+EYLD NIRYE YDES+HCIFHQGV GHVVQQC KFRSKVQ  MD
Subjt:  ASKKPDVNNNQLLKHENSKVNIVNCLVEKCKNEVHEMMMPLEALFKDIFEAGYVSYEYLDSNIRYEEYDESKHCIFHQGVIGHVVQQCCKFRSKVQP-MD

Query:  SKILIVQR
        SKIL V R
Subjt:  SKILIVQR

KAA0066096.1 uncharacterized protein E6C27_scaffold21G00870 [Cucumis melo var. makuwa]

4.19e-43

74.07

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Query:  ASKKPDVNNNQLLKHENSKVNIVNCLVEKCKNEVHEMMMPLEALFKDIFEAGYVSYEYLDSNIRYEEYDESKHCIFHQGVIGHVVQQCCKFRSKVQP-MD
        + +KP+VN N L  HEN KVN+V+ LVEKCKNEVHE++MP+EALF+ +FEAGYVS+EYLD NIRYE YDES+HCIFHQGV GHVVQQC KFRSKVQ  MD
Subjt:  ASKKPDVNNNQLLKHENSKVNIVNCLVEKCKNEVHEMMMPLEALFKDIFEAGYVSYEYLDSNIRYEEYDESKHCIFHQGVIGHVVQQCCKFRSKVQP-MD

Query:  SKILIVQR
        SKIL V R
Subjt:  SKILIVQR

XP_016902319.1 PREDICTED: uncharacterized protein LOC107991629 [Cucumis melo]

2.51e-43

74.04

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Query:  ASKKPDVNNNQLLKHENSKVNIVNCLVEKCKNEVHEMMMPLEALFKDIFEAGYVSYEYLDSNIRYEEYDESKHCIFHQGVIGHVVQQCCKFRSKVQP-MD
        +S+KP+VN N    HEN+KVN+V+ LVEKCKNEVHE+MMP+E LFK +FEAGYVS +YLD NI+YE YDES+HCIFHQGV+GHVVQQC KFRSKVQ  MD
Subjt:  ASKKPDVNNNQLLKHENSKVNIVNCLVEKCKNEVHEMMMPLEALFKDIFEAGYVSYEYLDSNIRYEEYDESKHCIFHQGVIGHVVQQCCKFRSKVQP-MD

Query:  SKIL
        SKIL
Subjt:  SKIL

TrEMBL top hits

e value

%identity

Alignment

A0A1S4E260 uncharacterized protein LOC107991629

1.22e-43

74.04

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Query:  ASKKPDVNNNQLLKHENSKVNIVNCLVEKCKNEVHEMMMPLEALFKDIFEAGYVSYEYLDSNIRYEEYDESKHCIFHQGVIGHVVQQCCKFRSKVQP-MD
        +S+KP+VN N    HEN+KVN+V+ LVEKCKNEVHE+MMP+E LFK +FEAGYVS +YLD NI+YE YDES+HCIFHQGV+GHVVQQC KFRSKVQ  MD
Subjt:  ASKKPDVNNNQLLKHENSKVNIVNCLVEKCKNEVHEMMMPLEALFKDIFEAGYVSYEYLDSNIRYEEYDESKHCIFHQGVIGHVVQQCCKFRSKVQP-MD

Query:  SKIL
        SKIL
Subjt:  SKIL

A0A5A7TGY2 Uncharacterized protein

9.27e-45

72.22

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Query:  ASKKPDVNNNQLLKHENSKVNIVNCLVEKCKNEVHEMMMPLEALFKDIFEAGYVSYEYLDSNIRYEEYDESKHCIFHQGVIGHVVQQCCKFRSKVQP-MD
        +S+KP+VN N    HEN+KVN+V+ LVEKCKNEVHE+MMP+E LF+ +FEAGYVS +YLD NI+YE YDES+HCIFHQGV+GHVVQQC KFRSKVQ  MD
Subjt:  ASKKPDVNNNQLLKHENSKVNIVNCLVEKCKNEVHEMMMPLEALFKDIFEAGYVSYEYLDSNIRYEEYDESKHCIFHQGVIGHVVQQCCKFRSKVQP-MD

Query:  SKILIVQR
        SKIL V R
Subjt:  SKILIVQR

A0A5A7UUD5 RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H-like protein

3.92e-44

73.15

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Query:  ASKKPDVNNNQLLKHENSKVNIVNCLVEKCKNEVHEMMMPLEALFKDIFEAGYVSYEYLDSNIRYEEYDESKHCIFHQGVIGHVVQQCCKFRSKVQP-MD
        + +KP+VN N L   EN KVN V+  VEK KNEVHE+MMP+EALF+D+FEAGYVS EYLD NIRYEEYDESKHCIFHQGV GHV QQC KF+SKVQ  MD
Subjt:  ASKKPDVNNNQLLKHENSKVNIVNCLVEKCKNEVHEMMMPLEALFKDIFEAGYVSYEYLDSNIRYEEYDESKHCIFHQGVIGHVVQQCCKFRSKVQP-MD

Query:  SKILIVQR
        SKIL V R
Subjt:  SKILIVQR

A0A5A7V3W7 Retrotrans_gag domain-containing protein

5.96e-44

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Query:  ASKKPDVNNNQLLKHENSKVNIVNCLVEKCKNEVHEMMMPLEALFKDIFEAGYVSYEYLDSNIRYEEYDESKHCIFHQGVIGHVVQQCCKFRSKVQP-MD
        + +KP+VN N L  HEN KVN V+ LVEKCKNEVHE++MP+EALF+D+FEAGYVS+EYLD NIRYE YDES+HCIFHQGV GHVVQQC KFRSKVQ  MD
Subjt:  ASKKPDVNNNQLLKHENSKVNIVNCLVEKCKNEVHEMMMPLEALFKDIFEAGYVSYEYLDSNIRYEEYDESKHCIFHQGVIGHVVQQCCKFRSKVQP-MD

Query:  SKILIVQR
        SKIL V R
Subjt:  SKILIVQR

A0A5A7VIB2 Uncharacterized protein

2.03e-43

74.07

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Query:  ASKKPDVNNNQLLKHENSKVNIVNCLVEKCKNEVHEMMMPLEALFKDIFEAGYVSYEYLDSNIRYEEYDESKHCIFHQGVIGHVVQQCCKFRSKVQP-MD
        + +KP+VN N L  HEN KVN+V+ LVEKCKNEVHE++MP+EALF+ +FEAGYVS+EYLD NIRYE YDES+HCIFHQGV GHVVQQC KFRSKVQ  MD
Subjt:  ASKKPDVNNNQLLKHENSKVNIVNCLVEKCKNEVHEMMMPLEALFKDIFEAGYVSYEYLDSNIRYEEYDESKHCIFHQGVIGHVVQQCCKFRSKVQP-MD

Query:  SKILIVQR
        SKIL V R
Subjt:  SKILIVQR

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGGTTAAGCTTCAACAAGCTAGTAAGAAGCCAGATGTCAACAACAATCAACTGCTTAAGCATGAAAATTCAAAAGTGAACATTGTGAATTGCCTTGTTGAAAAG
TGTAAAAATGAAGTTCATGAGATGATGATGCCTTTGGAAGCACTTTTTAAAGATATTTTTGAAGCAGGATATGTTAGTTATGAATATTTAGACTCCAATATAAGA
TATGAAGAGTATGATGAAAGCAAACATTGTATATTCCATCAAGGAGTTATAGGTCACGTTGTCCAACAATGCTGCAAATTTAGATCCAAAGTACAACCTATGGAT
TCAAAGATACTTATAGTACAGAGGACAAGGAAAAGATGA

mRNA sequence

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Protein sequence

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MVKLQQASKKPDVNNNQLLKHENSKVNIVNCLVEKCKNEVHEMMMPLEALFKDIFEAGYVSYEYLDSNIRYEEYDESKHCIFHQGVIGHVVQQCCKFRSKVQPMD
SKILIVQRTRKR

Cucsat.G15646 (gene) of Cucumber (B10) v3 genome