; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cucsat.G15658 (gene) of Cucumber (B10) v3 genome

Gene IDCucsat.G15658
OrganismCucumis sativus L. var. sativus cv. B10 (Cucumber (B10) v3)
DescriptionDNA topoisomerase 2-binding protein 1 isoform X2
Genome locationctg2009:5012627..5014410
RNA-Seq ExpressionCucsat.G15658
SyntenyCucsat.G15658
Gene Ontology termsGO:0016853 - isomerase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8637338.1 hypothetical protein CSA_000009, partial [Cucumis sativus]1.14e-4290.91Show/hide
Query:  SLAGLPSTQKVIEDTLQILKPKPFAGANVFVSRNLVAPEMFDAFHDTLKQNGAEVFLCCDPSQNAPNDYHVISSVDH
        SL GLPSTQKVIE TLQ+LKPKPFAGANVFVSRNLVA EMFD FHD LKQNGAEVFLCCDPSQNAPNDYHVISS DH
Subjt:  SLAGLPSTQKVIEDTLQILKPKPFAGANVFVSRNLVAPEMFDAFHDTLKQNGAEVFLCCDPSQNAPNDYHVISSVDH

KAE8650752.1 hypothetical protein Csa_017612, partial [Cucumis sativus]1.10e-6593.46Show/hide
Query:  NVLQKLNFISQNPSAIHTLNLSSLQFLTKSSLAGLPSTQKVIEDTLQILKPKPFAGANVFVSRNLVAPEMFDAFHDTLKQNGAEVFLCCDPSQNAPNDYH
        NVLQKLNFISQNPSAIHTLNLSSLQFLTKSSL GLPSTQKVIE TLQILKPKPF GANVF+SRNLVAPEMFDAFHDT KQNGAEVFLCCDPSQNAPNDYH
Subjt:  NVLQKLNFISQNPSAIHTLNLSSLQFLTKSSLAGLPSTQKVIEDTLQILKPKPFAGANVFVSRNLVAPEMFDAFHDTLKQNGAEVFLCCDPSQNAPNDYH

Query:  VISSVDH
        VISS +H
Subjt:  VISSVDH

XP_031745330.1 LOW QUALITY PROTEIN: protein ECT2-like [Cucumis sativus]2.04e-4088.61Show/hide
Query:  SLAGLPSTQKVIEDTLQILKPKPFAGANVFVSRNLVAPEMFDAFHDTLKQNGAEVFLCCDPSQNAPNDYHVISSVDHVR
        SL GLPSTQKVIE TLQ+LKPKPFAGANVFVSRNLVA EMFD FHD LKQNGAEVFLCCDPSQNAPNDYHVISS DH +
Subjt:  SLAGLPSTQKVIEDTLQILKPKPFAGANVFVSRNLVAPEMFDAFHDTLKQNGAEVFLCCDPSQNAPNDYHVISSVDHVR

XP_031745331.1 LOW QUALITY PROTEIN: DNA topoisomerase 2-binding protein 1-like, partial [Cucumis sativus]4.03e-3888.61Show/hide
Query:  SLAGLPSTQKVIEDTLQILKPKPFAGANVFVSRNLVAPEMFDAFHDTLKQNGAEVFLCCDPSQNAPNDYHVISSVDHVR
        SL GLPSTQKVIE TLQ+LKPKPFAGANVFVSRNLVA EMFD FHD LKQNGAEVFLCCDPSQNAPNDYHVISS DH +
Subjt:  SLAGLPSTQKVIEDTLQILKPKPFAGANVFVSRNLVAPEMFDAFHDTLKQNGAEVFLCCDPSQNAPNDYHVISSVDHVR

XP_031745859.1 LOW QUALITY PROTEIN: DNA topoisomerase 2-binding protein 1-A [Cucumis sativus]4.49e-3689.33Show/hide
Query:  LPSTQKVIEDTLQILKPKPFAGANVFVSRNLVAPEMFDAFHDTLKQNGAEVFLCCDPSQNAPNDYHVISSVDHVR
        LPSTQKVIE TLQ+LKPKPFAGANVFVSRNLVA EMFD FHD LKQNGAEVFLCCDPSQNAPNDYHVISS DH +
Subjt:  LPSTQKVIEDTLQILKPKPFAGANVFVSRNLVAPEMFDAFHDTLKQNGAEVFLCCDPSQNAPNDYHVISSVDHVR

TrEMBL top hitse value%identityAlignment
A0A0A0LB04 Uncharacterized protein2.11e-8193.02Show/hide
Query:  NVLQKLNFISQNPSAIHTLNLSSLQFLTKSSLAGLPSTQKVIEDTLQILKPKPFAGANVFVSRNLVAPEMFDAFHDTLKQNGAEVFLCCDPSQNAPNDYH
        NVLQKLNFISQNPSAIHTLNLSSLQFLTKSSL GLPSTQKVIE TLQILKPKPF GANVF+SRNLVAPEMFDAFHDT KQNGAEVFLCCDP+QNAP+DYH
Subjt:  NVLQKLNFISQNPSAIHTLNLSSLQFLTKSSLAGLPSTQKVIEDTLQILKPKPFAGANVFVSRNLVAPEMFDAFHDTLKQNGAEVFLCCDPSQNAPNDYH

Query:  VISSVDHVRNVSSISCSIYMATSDLQCVY
        VISS +HVRNVSSISCSIYMATSDLQCVY
Subjt:  VISSVDHVRNVSSISCSIYMATSDLQCVY

A0A1S4DV57 DNA topoisomerase 2-binding protein 1 isoform X11.38e-2887.1Show/hide
Query:  ILKPKPFAGANVFVSRNLVAPEMFDAFHDTLKQNGAEVFLCCDPSQNAPNDYHVISSVDHVR
        +LKPKPFAGANVFVSRNLVAPEMFDA HD LKQNGAEVFLCCDPS+N PNDYHVISS DH +
Subjt:  ILKPKPFAGANVFVSRNLVAPEMFDAFHDTLKQNGAEVFLCCDPSQNAPNDYHVISSVDHVR

A0A1S4DV59 DNA topoisomerase 2-binding protein 1 isoform X21.38e-2887.1Show/hide
Query:  ILKPKPFAGANVFVSRNLVAPEMFDAFHDTLKQNGAEVFLCCDPSQNAPNDYHVISSVDHVR
        +LKPKPFAGANVFVSRNLVAPEMFDA HD LKQNGAEVFLCCDPS+N PNDYHVISS DH +
Subjt:  ILKPKPFAGANVFVSRNLVAPEMFDAFHDTLKQNGAEVFLCCDPSQNAPNDYHVISSVDHVR

A0A5A7U8G5 DNA topoisomerase 2-binding protein 1 isoform X21.38e-2887.1Show/hide
Query:  ILKPKPFAGANVFVSRNLVAPEMFDAFHDTLKQNGAEVFLCCDPSQNAPNDYHVISSVDHVR
        +LKPKPFAGANVFVSRNLVAPEMFDA HD LKQNGAEVFLCCDPS+N PNDYHVISS DH +
Subjt:  ILKPKPFAGANVFVSRNLVAPEMFDAFHDTLKQNGAEVFLCCDPSQNAPNDYHVISSVDHVR

A0A5D3BRP8 DNA topoisomerase 2-binding protein 1 isoform X21.38e-2887.1Show/hide
Query:  ILKPKPFAGANVFVSRNLVAPEMFDAFHDTLKQNGAEVFLCCDPSQNAPNDYHVISSVDHVR
        +LKPKPFAGANVFVSRNLVAPEMFDA HD LKQNGAEVFLCCDPS+N PNDYHVISS DH +
Subjt:  ILKPKPFAGANVFVSRNLVAPEMFDAFHDTLKQNGAEVFLCCDPSQNAPNDYHVISSVDHVR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G77320.1 transcription coactivators6.8e-1751.32Show/hide
Query:  FAGANVFVSRNLVAPEMFDAFHDTLKQNGAEVFLCCDPSQNAPNDYHVISSVDH--VRNVSSISCSIYMATSDLQC
        F GANVF+SRNLV PE+FD   D  K NGAE+FLCCDPS++ P+D+HVI+S DH   +++ +  C++      L C
Subjt:  FAGANVFVSRNLVAPEMFDAFHDTLKQNGAEVFLCCDPSQNAPNDYHVISSVDH--VRNVSSISCSIYMATSDLQC

AT1G77320.2 transcription coactivators3.1e-1465.96Show/hide
Query:  FAGANVFVSRNLVAPEMFDAFHDTLKQNGAEVFLCCDPSQNAPNDYH
        F GANVF+SRNLV PE+FD   D  K NGAE+FLCCDPS++ P+D+H
Subjt:  FAGANVFVSRNLVAPEMFDAFHDTLKQNGAEVFLCCDPSQNAPNDYH


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
AATGTGCTACAAAAGCTCAACTTCATTTCACAAAACCCTTCCGCCATTCACACTCTCAATCTTTCTTCCCTCCAATTTCTCACAAAATCCTCTCTCGCCGGACTTCCATC
GACACAGAAAGTAATCGAAGACACTCTCCAAATTCTGAAGCCCAAGCCATTTGCCGGAGCTAATGTGTTCGTCTCTCGTAATCTTGTCGCACCGGAGATGTTCGATGCTT
TTCACGACACTCTCAAGCAGAATGGGGCTGAGGTTTTCCTCTGTTGCGATCCCTCTCAAAACGCCCCTAACGATTATCATGTTATCTCCTCTGTCGATCACGTACGAAAC
GTCTCATCGATTTCTTGTTCAATTTATATGGCTACTTCGGATTTGCAATGTGTTTATTGGTTGTTGATTCCTGCTTTCAGGCAAAGTTCGAGGATCTTCGCGCCAAGGGA
TGCAACTTGTTAG
mRNA sequenceShow/hide mRNA sequence
AATGTGCTACAAAAGCTCAACTTCATTTCACAAAACCCTTCCGCCATTCACACTCTCAATCTTTCTTCCCTCCAATTTCTCACAAAATCCTCTCTCGCCGGACTTCCATC
GACACAGAAAGTAATCGAAGACACTCTCCAAATTCTGAAGCCCAAGCCATTTGCCGGAGCTAATGTGTTCGTCTCTCGTAATCTTGTCGCACCGGAGATGTTCGATGCTT
TTCACGACACTCTCAAGCAGAATGGGGCTGAGGTTTTCCTCTGTTGCGATCCCTCTCAAAACGCCCCTAACGATTATCATGTTATCTCCTCTGTCGATCACGTACGAAAC
GTCTCATCGATTTCTTGTTCAATTTATATGGCTACTTCGGATTTGCAATGTGTTTATTGGTTGTTGATTCCTGCTTTCAGGCAAAGTTCGAGGATCTTCGCGCCAAGGGA
TGCAACTTGTTAG
Protein sequenceShow/hide protein sequence
NVLQKLNFISQNPSAIHTLNLSSLQFLTKSSLAGLPSTQKVIEDTLQILKPKPFAGANVFVSRNLVAPEMFDAFHDTLKQNGAEVFLCCDPSQNAPNDYHVISSVDHVRN
VSSISCSIYMATSDLQCVYWLLIPAFRQSSRIFAPRDATC