CuGenDBv2

Gene ID	Cucsat.G15753
Organism	Cucumis sativus L. var. sativus cv. B10 (Cucumber (B10) v3)
Description	Beta-galactosidase
Genome location	ctg2009:3548828..3549824
RNA-Seq Expression	Cucsat.G15753
Synteny	Cucsat.G15753
Gene Ontology terms	GO:0015074 - DNA integration (biological process) GO:0003676 - nucleic acid binding (molecular function)
InterPro domains	IPR013103 - Reverse transcriptase, RNA-dependent DNA polymerase

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0034028.1 Beta-galactosidase [Cucumis melo var. makuwa]

1.49e-52

74.42

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Query:  LEEEVYMNPPPGFEAQFDHRVCKLLKFLYALKQSPRAWFDRFTTFVKSQGYTQGHSNHTLFTKVSKAGKKVVN--------LAGDDIAEIIQLK-KMGDE
        L EEVYM+PPPGFEAQF  +VCKL K LY LKQSPRAWFDRFTTFVKSQGY+QGHS+HTLFTK SK GK  +         L GDD  EI QLK +MGDE
Subjt:  LEEEVYMNPPPGFEAQFDHRVCKLLKFLYALKQSPRAWFDRFTTFVKSQGYTQGHSNHTLFTKVSKAGKKVVN--------LAGDDIAEIIQLK-KMGDE

Query:  FEIKDLDNLKYFLGMEVARSKEGIFVYQR
        FEIKDL NLKYFLGMEVARSKEGI V QR
Subjt:  FEIKDLDNLKYFLGMEVARSKEGIFVYQR

KAA0035088.1 Beta-galactosidase [Cucumis melo var. makuwa]

8.52e-53

75.19

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Query:  LEEEVYMNPPPGFEAQFDHRVCKLLKFLYALKQSPRAWFDRFTTFVKSQGYTQGHSNHTLFTKVSKAGKKVVN--------LAGDDIAEIIQLK-KMGDE
        L EEVYM+PPPGFEAQF  +VCKL K LY LKQSPRAWFDRFT FVKSQGY+QGHSNHTLFTK SK GK V+         L GDD  EI QLK +MGDE
Subjt:  LEEEVYMNPPPGFEAQFDHRVCKLLKFLYALKQSPRAWFDRFTTFVKSQGYTQGHSNHTLFTKVSKAGKKVVN--------LAGDDIAEIIQLK-KMGDE

Query:  FEIKDLDNLKYFLGMEVARSKEGIFVYQR
        FEIKDL+NLKYFLGMEVARSKEGI V QR
Subjt:  FEIKDLDNLKYFLGMEVARSKEGIFVYQR

KAA0036967.1 putative mitochondrial protein [Cucumis melo var. makuwa]

2.17e-51

73.17

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Query:  MNPPPGFEAQFDHRVCKLLKFLYALKQSPRAWFDRFTTFVKSQGYTQGHSNHTLFTKVSKAGKKVVN--------LAGDDIAEIIQLK-KMGDEFEIKDL
        M+PPPGFEAQF  +VCKL K LY LKQSPRAWFDRFTTFVKSQGY+QGHS+HTLFTK SK GK  +         L GDD  +I QLK +MGDEFEIKDL
Subjt:  MNPPPGFEAQFDHRVCKLLKFLYALKQSPRAWFDRFTTFVKSQGYTQGHSNHTLFTKVSKAGKKVVN--------LAGDDIAEIIQLK-KMGDEFEIKDL

Query:  DNLKYFLGMEVARSKEGIFVYQR
         NLKYFLGMEVARSKEGI V QR
Subjt:  DNLKYFLGMEVARSKEGIFVYQR

KAA0052171.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]

2.15e-51

73.64

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Query:  LEEEVYMNPPPGFEAQFDHRVCKLLKFLYALKQSPRAWFDRFTTFVKSQGYTQGHSNHTLFTKVSKAGKKVVN--------LAGDDIAEIIQLK-KMGDE
        L EEVYM+PPPGFEAQF   VCKL K LY LKQSPRAWFDRFTTFVKSQGY+QGHS+HTLFTK SK GK  +         L GDD  EI QLK +MG E
Subjt:  LEEEVYMNPPPGFEAQFDHRVCKLLKFLYALKQSPRAWFDRFTTFVKSQGYTQGHSNHTLFTKVSKAGKKVVN--------LAGDDIAEIIQLK-KMGDE

Query:  FEIKDLDNLKYFLGMEVARSKEGIFVYQR
        FEIKDL NLKYFLGMEVARSKEGI V QR
Subjt:  FEIKDLDNLKYFLGMEVARSKEGIFVYQR

KAA0063166.1 Beta-galactosidase [Cucumis melo var. makuwa]

1.07e-50

74.42

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Query:  LEEEVYMNPPPGFEAQFDHRVCKLLKFLYALKQSPRAWFDRFTTFVKSQGYTQGHSNHTLFTKVSKAGKKVVN--------LAGDDIAEIIQLK-KMGDE
        L EEVYM+PPPGFEAQF  +VCKL K LY LKQSPRAWFDRFTTFVKSQGY+QGHS+HTLFTK SK GK  +         L GDD  EI QLK +MGDE
Subjt:  LEEEVYMNPPPGFEAQFDHRVCKLLKFLYALKQSPRAWFDRFTTFVKSQGYTQGHSNHTLFTKVSKAGKKVVN--------LAGDDIAEIIQLK-KMGDE

Query:  FEIKDLDNLKYFLGMEVARSKEGIFVYQR
        FEIKDL NLKYFLGMEVARSKEGI V QR
Subjt:  FEIKDLDNLKYFLGMEVARSKEGIFVYQR

TrEMBL top hits

e value

%identity

Alignment

A0A5A7STS0 Beta-galactosidase

7.23e-53

74.42

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Query:  LEEEVYMNPPPGFEAQFDHRVCKLLKFLYALKQSPRAWFDRFTTFVKSQGYTQGHSNHTLFTKVSKAGKKVVN--------LAGDDIAEIIQLK-KMGDE
        L EEVYM+PPPGFEAQF  +VCKL K LY LKQSPRAWFDRFTTFVKSQGY+QGHS+HTLFTK SK GK  +         L GDD  EI QLK +MGDE
Subjt:  LEEEVYMNPPPGFEAQFDHRVCKLLKFLYALKQSPRAWFDRFTTFVKSQGYTQGHSNHTLFTKVSKAGKKVVN--------LAGDDIAEIIQLK-KMGDE

Query:  FEIKDLDNLKYFLGMEVARSKEGIFVYQR
        FEIKDL NLKYFLGMEVARSKEGI V QR
Subjt:  FEIKDLDNLKYFLGMEVARSKEGIFVYQR

A0A5A7SWV4 Beta-galactosidase

4.12e-53

75.19

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Query:  LEEEVYMNPPPGFEAQFDHRVCKLLKFLYALKQSPRAWFDRFTTFVKSQGYTQGHSNHTLFTKVSKAGKKVVN--------LAGDDIAEIIQLK-KMGDE
        L EEVYM+PPPGFEAQF  +VCKL K LY LKQSPRAWFDRFT FVKSQGY+QGHSNHTLFTK SK GK V+         L GDD  EI QLK +MGDE
Subjt:  LEEEVYMNPPPGFEAQFDHRVCKLLKFLYALKQSPRAWFDRFTTFVKSQGYTQGHSNHTLFTKVSKAGKKVVN--------LAGDDIAEIIQLK-KMGDE

Query:  FEIKDLDNLKYFLGMEVARSKEGIFVYQR
        FEIKDL+NLKYFLGMEVARSKEGI V QR
Subjt:  FEIKDLDNLKYFLGMEVARSKEGIFVYQR

A0A5A7T5X9 Putative mitochondrial protein

1.05e-51

73.17

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Query:  MNPPPGFEAQFDHRVCKLLKFLYALKQSPRAWFDRFTTFVKSQGYTQGHSNHTLFTKVSKAGKKVVN--------LAGDDIAEIIQLK-KMGDEFEIKDL
        M+PPPGFEAQF  +VCKL K LY LKQSPRAWFDRFTTFVKSQGY+QGHS+HTLFTK SK GK  +         L GDD  +I QLK +MGDEFEIKDL
Subjt:  MNPPPGFEAQFDHRVCKLLKFLYALKQSPRAWFDRFTTFVKSQGYTQGHSNHTLFTKVSKAGKKVVN--------LAGDDIAEIIQLK-KMGDEFEIKDL

Query:  DNLKYFLGMEVARSKEGIFVYQR
         NLKYFLGMEVARSKEGI V QR
Subjt:  DNLKYFLGMEVARSKEGIFVYQR

A0A5A7UF74 Retrovirus-related Pol polyprotein from transposon TNT 1-94

1.04e-51

73.64

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Query:  LEEEVYMNPPPGFEAQFDHRVCKLLKFLYALKQSPRAWFDRFTTFVKSQGYTQGHSNHTLFTKVSKAGKKVVN--------LAGDDIAEIIQLK-KMGDE
        L EEVYM+PPPGFEAQF   VCKL K LY LKQSPRAWFDRFTTFVKSQGY+QGHS+HTLFTK SK GK  +         L GDD  EI QLK +MG E
Subjt:  LEEEVYMNPPPGFEAQFDHRVCKLLKFLYALKQSPRAWFDRFTTFVKSQGYTQGHSNHTLFTKVSKAGKKVVN--------LAGDDIAEIIQLK-KMGDE

Query:  FEIKDLDNLKYFLGMEVARSKEGIFVYQR
        FEIKDL NLKYFLGMEVARSKEGI V QR
Subjt:  FEIKDLDNLKYFLGMEVARSKEGIFVYQR

A0A5A7V9P8 Beta-galactosidase

5.18e-51

74.42

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Query:  LEEEVYMNPPPGFEAQFDHRVCKLLKFLYALKQSPRAWFDRFTTFVKSQGYTQGHSNHTLFTKVSKAGKKVVN--------LAGDDIAEIIQLK-KMGDE
        L EEVYM+PPPGFEAQF  +VCKL K LY LKQSPRAWFDRFTTFVKSQGY+QGHS+HTLFTK SK GK  +         L GDD  EI QLK +MGDE
Subjt:  LEEEVYMNPPPGFEAQFDHRVCKLLKFLYALKQSPRAWFDRFTTFVKSQGYTQGHSNHTLFTKVSKAGKKVVN--------LAGDDIAEIIQLK-KMGDE

Query:  FEIKDLDNLKYFLGMEVARSKEGIFVYQR
        FEIKDL NLKYFLGMEVARSKEGI V QR
Subjt:  FEIKDLDNLKYFLGMEVARSKEGIFVYQR

SwissProt top hits

e value

%identity

Alignment

P04146 Copia protein

5.2e-08

27.27

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Query:  LEEEVYMNPPPGFEAQFDHRVCKLLKFLYALKQSPRAWFDRFTTFVKSQGYT------------QGHSNHTLFTKVSKAGKKVVNLAGDDIAEIIQLKK-
        L+EE+YM  P G     D+ VCKL K +Y LKQ+ R WF+ F   +K   +             +G+ N  ++  +       V +A  D+  +   K+ 
Subjt:  LEEEVYMNPPPGFEAQFDHRVCKLLKFLYALKQSPRAWFDRFTTFVKSQGYT------------QGHSNHTLFTKVSKAGKKVVNLAGDDIAEIIQLKK-

Query:  MGDEFEIKDLDNLKYFLGMEVARSKEGIFVYQ
        + ++F + DL+ +K+F+G+ +   ++ I++ Q
Subjt:  MGDEFEIKDLDNLKYFLGMEVARSKEGIFVYQ

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94

5.7e-15

38.46

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Query:  FLHSSLSFLEEEVYMNPPPGFE-AQFDHRVCKLLKFLYALKQSPRAWFDRFTTFVKSQGYTQGHSNHTLFTKVSKAGKKVVNL--------AGDDIAEII
        FLH     LEEE+YM  P GFE A   H VCKL K LY LKQ+PR W+ +F +F+KSQ Y + +S+  ++ K       ++ L         G D   I 
Subjt:  FLHSSLSFLEEEVYMNPPPGFE-AQFDHRVCKLLKFLYALKQSPRAWFDRFTTFVKSQGYTQGHSNHTLFTKVSKAGKKVVNL--------AGDDIAEII

Query:  QLK-KMGDEFEIKDLDNLKYFLGMEVARSK
        +LK  +   F++KDL   +  LGM++ R +
Subjt:  QLK-KMGDEFEIKDLDNLKYFLGMEVARSK

Q94HW2 Retrovirus-related Pol polyprotein from transposon RE1

3.1e-13

35.11

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Query:  LEEEVYMNPPPGF-EAQFDHRVCKLLKFLYALKQSPRAWFDRFTTFVKSQGYTQGHSNHTLFTKVSKAGKKVVN---------LAGDDIAEIIQ-LKKMG
        L ++VYM+ PPGF +    + VCKL K LY LKQ+PRAW+     ++ + G+    S+ +LF  V + GK +V          + G+D   +   L  + 
Subjt:  LEEEVYMNPPPGF-EAQFDHRVCKLLKFLYALKQSPRAWFDRFTTFVKSQGYTQGHSNHTLFTKVSKAGKKVVN---------LAGDDIAEIIQ-LKKMG

Query:  DEFEIKDLDNLKYFLGMEVARSKEGIFVYQR
          F +KD + L YFLG+E  R   G+ + QR
Subjt:  DEFEIKDLDNLKYFLGMEVARSKEGIFVYQR

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE2

4.1e-13

32.06

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Query:  LEEEVYMNPPPGF-EAQFDHRVCKLLKFLYALKQSPRAWFDRFTTFVKSQGYTQGHSNHTLFTKVSKAGKKVVNL----------AGDDIAEIIQLKKMG
        L +EVYM+ PPGF +      VC+L K +Y LKQ+PRAW+    T++ + G+    S+ +LF  V + G+ ++ +            D +     L  + 
Subjt:  LEEEVYMNPPPGF-EAQFDHRVCKLLKFLYALKQSPRAWFDRFTTFVKSQGYTQGHSNHTLFTKVSKAGKKVVNL----------AGDDIAEIIQLKKMG

Query:  DEFEIKDLDNLKYFLGMEVARSKEGIFVYQR
          F +K+ ++L YFLG+E  R  +G+ + QR
Subjt:  DEFEIKDLDNLKYFLGMEVARSKEGIFVYQR

Arabidopsis top hits

e value

%identity

Alignment

AT4G23160.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 8

1.1e-18

39.85

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Query:  LEEEVYMNPPPGFEAQF-----DHRVCKLLKFLYALKQSPRAWFDRFTTFVKSQGYTQGHSNHTLFTKVSKAGKKVVNLAGDDI-------AEIIQLK-K
        L+EE+YM  PPG+ A+       + VC L K +Y LKQ+ R WF +F+  +   G+ Q HS+HT F K++      V +  DDI       A + +LK +
Subjt:  LEEEVYMNPPPGFEAQF-----DHRVCKLLKFLYALKQSPRAWFDRFTTFVKSQGYTQGHSNHTLFTKVSKAGKKVVNLAGDDI-------AEIIQLK-K

Query:  MGDEFEIKDLDNLKYFLGMEVARSKEGIFVYQR
        +   F+++DL  LKYFLG+E+ARS  GI + QR
Subjt:  MGDEFEIKDLDNLKYFLGMEVARSKEGIFVYQR

Sequences

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CDS sequence

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TTTAATCTTCCTCTTATTCCATTTTTTCTTCATTCATCCTTAAGTTTCTTGGAAGAGGAAGTCTATATGAACCCCCCTCCAGGGTTTGAAGCCCAGTTTGATCAT
CGGGTTTGCAAACTTCTGAAATTCTTGTATGCACTAAAACAGTCACCAAGAGCATGGTTTGATAGGTTTACTACCTTTGTTAAGTCCCAAGGGTACACTCAAGGG
CACTCTAATCACACCTTGTTTACAAAAGTCTCAAAGGCTGGGAAAAAAGTCGTCAATTTAGCTGGGGACGACATCGCTGAGATCATCCAACTAAAAAAGATGGGT
GATGAGTTTGAAATTAAAGACTTGGACAATCTGAAATATTTCCTTGGGATGGAGGTAGCTAGATCAAAAGAAGGTATCTTCGTATATCAGAGGAACCCTTGA

mRNA sequence

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Protein sequence

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FNLPLIPFFLHSSLSFLEEEVYMNPPPGFEAQFDHRVCKLLKFLYALKQSPRAWFDRFTTFVKSQGYTQGHSNHTLFTKVSKAGKKVVNLAGDDIAEIIQLKKMG
DEFEIKDLDNLKYFLGMEVARSKEGIFVYQRNP

Cucsat.G15753 (gene) of Cucumber (B10) v3 genome